mRNA_M-pyrifera_M_contig10401.856.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10401.856.1
Unique NamemRNA_M-pyrifera_M_contig10401.856.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10401.856.1 vs. uniprot
Match: D8LSF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSF0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.570e-11
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  217 MKLPITNNDLVEHMQKHGMVKTPAIMEAFRAVDRGDFATALLRQ 348
            MKLP +N++LV +M+KHGMVKTPAI+EAFRAVDRGDFAT  L Q
Sbjct:    1 MKLPRSNDELVAYMKKHGMVKTPAIIEAFRAVDRGDFATPNLGQ 44
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10401.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSF0_ECTSI2.570e-1175.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10401contigM-pyrifera_M_contig10401:9163..9510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue8.6e-10
Seed eggNOG ortholog2880.D8LSF0
Preferred namePCMTD2
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004719,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0010340,GO:0016740,GO:0016741,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0051998,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
EggNOG OGsCOG2518@1,KOG1661@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size350
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.404789-UTR-M-pyrifera_M_contig10401:9162..93781622815546.404789-UTR-M-pyrifera_M_contig10401:9162..9378Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10401 9163..9378 +
1692277457.9251714-UTR-M-pyrifera_M_contig10401:9162..93781692277457.9251714-UTR-M-pyrifera_M_contig10401:9162..9378Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10401 9163..9378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.4197373-CDS-M-pyrifera_M_contig10401:9378..95101622815546.4197373-CDS-M-pyrifera_M_contig10401:9378..9510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10401 9379..9510 +
1692277457.9353034-CDS-M-pyrifera_M_contig10401:9378..95101692277457.9353034-CDS-M-pyrifera_M_contig10401:9378..9510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10401 9379..9510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10401.856.1prot_M-pyrifera_M_contig10401.856.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10401 9379..9510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10401.856.1

>prot_M-pyrifera_M_contig10401.856.1 ID=prot_M-pyrifera_M_contig10401.856.1|Name=mRNA_M-pyrifera_M_contig10401.856.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
MKLPITNNDLVEHMQKHGMVKTPAIMEAFRAVDRGDFATALLRQ
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mRNA from alignment at M-pyrifera_M_contig10401:9163..9510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10401.856.1 ID=mRNA_M-pyrifera_M_contig10401.856.1|Name=mRNA_M-pyrifera_M_contig10401.856.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig10401:9163..9510+ (Macrocystis pyrifera P11B4 male)
CTCCGAACCACCAAAGAAGAAGCAGACAGAAGGGCCAACGGTCCCACGGA
CAAAGCCCGAACCAAATCCGGAAAAGAAAGGAACGAGACAAGAGAGAAGG
GCACAGCTTACGGAAGGTCGCCGGAAATCGACAACAGTAACAGCAGCACC
AACCACGAACATTTGAAAGAGCAGAAGGGGGAGAAGAAGAAGAAGAAGAG
CCGGCCTTAATCTGCGATGAAGCTACCGATCACCAACAACGACCTGGTGG
AGCACATGCAAAAACATGGCATGGTGAAAACGCCTGCGATAATGGAGGCG
TTTCGAGCCGTGGACAGGGGAGACTTTGCGACCGCCCTTCTCCGCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10401:9163..9510+

>mRNA_M-pyrifera_M_contig10401.856.1 ID=mRNA_M-pyrifera_M_contig10401.856.1|Name=mRNA_M-pyrifera_M_contig10401.856.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig10401:9163..9510+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTACCGATCACCAACAACGACCTGGTGGAGCACATGCAAAAACA
TGGCATGGTGAAAACGCCTGCGATAATGGAGGCGTTTCGAGCCGTGGACA
GGGGAGACTTTGCGACCGCCCTTCTCCGCCAGATGAAGCTACCGATCACC
AACAACGACCTGGTGGAGCACATGCAAAAACATGGCATGGTGAAAACGCC
TGCGATAATGGAGGCGTTTCGAGCCGTGGACAGGGGAGACTTTGCGACCG
CCCTTCTCCGCCAG
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