mRNA_M-pyrifera_M_contig1040.855.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1040.855.1
Unique NamemRNA_M-pyrifera_M_contig1040.855.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1040.855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1040contigM-pyrifera_M_contig1040:22278..29565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size390
Cds size390
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1040.855.1prot_M-pyrifera_M_contig1040.855.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1040 22278..29565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.3419094-CDS-M-pyrifera_M_contig1040:22277..224031622815546.3419094-CDS-M-pyrifera_M_contig1040:22277..22403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1040 22278..22403 -
1692277457.8942053-CDS-M-pyrifera_M_contig1040:22277..224031692277457.8942053-CDS-M-pyrifera_M_contig1040:22277..22403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1040 22278..22403 -
1622815546.3567743-CDS-M-pyrifera_M_contig1040:28696..288221622815546.3567743-CDS-M-pyrifera_M_contig1040:28696..28822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1040 28697..28822 -
1692277457.903446-CDS-M-pyrifera_M_contig1040:28696..288221692277457.903446-CDS-M-pyrifera_M_contig1040:28696..28822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1040 28697..28822 -
1622815546.3675861-CDS-M-pyrifera_M_contig1040:29427..295651622815546.3675861-CDS-M-pyrifera_M_contig1040:29427..29565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1040 29428..29565 -
1692277457.9130511-CDS-M-pyrifera_M_contig1040:29427..295651692277457.9130511-CDS-M-pyrifera_M_contig1040:29427..29565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1040 29428..29565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1040.855.1

>prot_M-pyrifera_M_contig1040.855.1 ID=prot_M-pyrifera_M_contig1040.855.1|Name=mRNA_M-pyrifera_M_contig1040.855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
SQHQGKYEEADAFYARGIDNQERTLGSDHPDLVIYLDNRAGLLSNQGNYE
EADALYARAIDIGEALIGPDHPDQATPLSDRAWVLTSQGKHAEADAVFCR
AMETWENMAGPDAPDLATRLMRQAGILSR*
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mRNA from alignment at M-pyrifera_M_contig1040:22278..29565-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1040.855.1 ID=mRNA_M-pyrifera_M_contig1040.855.1|Name=mRNA_M-pyrifera_M_contig1040.855.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7288bp|location=Sequence derived from alignment at M-pyrifera_M_contig1040:22278..29565- (Macrocystis pyrifera P11B4 male)
TCCCAACACCAGGGCAAGTACGAAGAGGCCGACGCTTTCTACGCCCGAGG
TATTGACAACCAAGAAAGAACTCTGGGCTCAGATCACCCCGATTTAGTCA
TATATCTCGACAACCGAGCGGGACTGTTGAGTAACCAAGTGAGAAAAATG
TACGGTAAGCATCTAACACACGTTGAAGGGTTAGGGCATGAGTCGTCATG
TCCCCCCACTCGAAGTGCCTTGCTAACGAGGCGTTGTTTTGGCATAGAGA
TTCCAGCCACAATCGCTAAAATGTGTCATGTTTCTCAATAACAGATGGGG
TAGTCAGGCGAGTATCGAAGACGGTTGCAGTGGTGCACTACTGCACCGGC
TTCTTCTCAACTCCTTGCAAGCTCGTTCAGAAGACTTGAACCTCTAGGTG
GTCCCTGTTGGCATGATTTGGTTTAGATATTCTTACACCAGCCGTCCCTC
CCCTTCACCTTTGACTGCGTAAAATGCATCGTTTGATGACCCGTAGCCCA
TCCCGCTCACACCAGCCGTCTCTTGCACACTAAGGCATGTACGCATAGTG
GGGCCGCTGTACGAGCACTTTCTGGTGACCCATGACTTGGTGTAAGGCTA
AGCATAGTACGATAAAATGTACTAATGTAGATGTGGAACACTTAGCTGCG
GCGCAATCATCCAACAAGAGGAGATTGCTCATTCAACGCACGTTCCACAG
GTTTCGCCAACCATGCATATTGCTCTGATCGCCCAAACCCCAGGGCAATT
ACGAGGAGGCCGACGCTCTCTACGCTCGAGCAATTGATATTGGGGAAGCT
TTGATTGGCCCTGATCACCCCGACCAAGCAACGCCTCTCAGCGACCGGGC
TTGGGTGCTGACGAGTCAGGTTTGAGTAAAGTACATCCGAAATATATGCC
TGGCTACTTGCGCAGGGTTCACATGTGTCAGAGATCTGTGTATACATATA
TGGTTGATACTACAGCTTTCCCTATCCACCGCTTGCTGTAGAGTGCGAGT
ACGCCCAGGCCGATACGCTGGTTAAGCGGTCGTTTGCCATTGCAGGTAAG
ATGCTGGGTAGTGTGCATCCAAATTAGACGCTCCTTTCGTCCAACAACTG
GGCGTATATATTCAACAGTCAAGCAGAGACCCTCCCAGGGCTTTCACGGG
GTCGAAGGCTCCCGGTTGGTTTTAGCTGCCGGTACTTGACGACCGCCCTT
CTGACTGCTCACACACCCCTCCCATTGTTCGAATGCAGGGCAAGCACGCC
GAGGCCGAGCCACTGTACAAGCGTTCACTATCAATCAAAGCTAAAGAGTA
CCGGTCCTGATCACCCGGATCTCGCTGCCGACCTCGGCCACCTGGCGACA
TTGCTTGAGACAGTGGTGAGACCTGCTATCCGGTAAATATCGAAGCGCTC
GCGGTCTTCACTTTAGGGCACGCCGTGCTGTTGTGCATGTGTTCTCGATG
GACATTCACACATCACGATGTTCTCGTCAACACCACTCACCGTATTTTTC
TGTCCATACTGTCGACGTGTTGTCGAAAGCAAATCGGGAGTTCGAGCATC
GCATAATAACGAACCCCACGAGGAACGTGCAATCTCGTGCCGTGCCAACG
GTGAGGTATGGCAGCGGCCAACGTCACATCCATGTGTGCTTGCACAAAGC
GCCTCGGTTTTCAGGCCGGCTTGCTGAGATTGTGGCGCAGGCGATGGGGC
ACCCAGTGAGGCATCCACCGGAACAAGCGGCGCTCATGGCCTAAGCCGAG
CCCCAAACTGAGCTGTAAACACGTGTTTGCGGGGTATTTCTTGTAGGTTT
ACAGATCACAAGGTTTGTTTCGGCGAGGATCGTCGAGACCAGTTGTACCT
GGGGAAGGGGGGTGCGTTGCATACTTTAGGTGCATGGCACAGTCTGATCG
TGCCAAAAACTTGTTTCCTAGGTCCGGTGGCAGCTGATGCCTGTGGCAGC
TGTATCACCCACCCAAACTCTCCGTCGATGCCCGACACCGAACAGTAGGC
TCCATGATCTTCGAGGCCTCAACTGCGTGCAGTGCAGTGCCGCAGAAAGG
CTTGGAGAAAAAAAAAACTTGTCTGTTGTTCCTCCTTCGCATGCACTTTT
GGTTAAGAGACCCGTAAATGACTACTGCTGTAGTAATACAATATGAAGCA
ACGGTATCCGGGTTGCTGCTACCACTGACGAACACGCTGATACCCACACG
CAAACCCACACCCCATGCAGGGTAAGGACGAGGAAGCGGAGCCTCTTTAC
AAGCGTGCGGTCGTGATTCTGGGAGCGGCCTTGGGAGGGGATCATGCCGA
AGTGGCCACCGCTCTCAGCTACCATGCGGGAGTGTTGATGGCGCCGGTAG
GAGTCGCCTACCCCTCCCCACTCCCACTCCCCTTCAATTATTATTTGTAG
CAGGTTTTTTCAACGCATAGAGCCATGATCGGTTCTTTTTTCCGCCTTCT
GTATGATTCTAGTTCTGTCGTTTTGCTGAACAAACCAATAGAGTGTGTTG
AATGTTGAAGATCAAGGAGATACTTTTCCCCTCGATTTTCGTGTTGTTCG
GGTGATCGGGGTCCATCTCCTCAATCTGGACTGTTTGAAGCTGAAAGGTG
TTTTCATCTGCGTATGTGCAAAAGTTTACGTACCAAAGTAATTTGGTTAG
GGTCAATGTGAGGCGAGTAAGCACTTCGGCCAAAAGGCCCGTTGTGCTGT
GCGATGAAGCTGCATCCAGGTGCCTCGAACACACCAATGACATCGTCCAG
CTAGTCCTACACCTTCTTGCTGTGCGCGAGCGAGCTCTGGCACAATGGCC
CGGCGTTAACGTACGTGCTCTTCTGCCAAAAAGGCGGTTGGAGTAAGCGC
GTAGGACCATGGGCCCACTTCTTGCTACAAATGAAAAGTGAGCCGAGACC
GAGCCGATATTTCAACGGTATTTCACCATAGGTCATAATGTGCTGGATAC
GTAACATCTATATCTTCTCCTATCGCTCAACCAATTCGTGAGATATTCGA
AGAGCACAGTAAGAGATTTCACGAGGTGGAAGTTGTCCGTCAACAATTAT
TACACTGAAAATCGTTAGCCTATGACTCTTGCCTCTCTCCAACCCACTAC
ATACTGTCACTCAGAGAAAATGACGTGAAACTTAAGTCACCGTACAAGTA
TTCGCTGGCGATCGATACGAAGGTGTACAGGCTTGACCACCCGGAAGTCG
CTACCGATCTTTATCTGTTGTCGGTGTTATTGGAGACAACGGTGAGGCGT
ACTTTCTCACCAAGGTCAAAGTGTCTGGGGGGCTCGTTCGGGGACCATTC
CGAGCCACTGAGCATGATTCTCTGGTATTCTACGTACTCTACAACGACCC
CCCAAGATCCAAAAAAAAGAAGTGAAATCGTGATACTGGTTTGTGGACGA
CTGCCAAAATGATTAGTTTGGGTTTTGACATGATAAATAGGCGGCGTCAA
TTTTGCGCAGAGGGCAACAAATGTTGAATCCACCTACGGGGGTTTTCTGC
GCAAGCGTCACCGTTGTCGGTATACCCGCTTTCGATATCGACCACAGCCT
GCGTTGGCTCGTGAGTCAGGCGCCTCCCCGCCCCGAGAGAAATCTACGAG
CGCTGTGGTATATTCCGTGGGTGTTCAAGCAGCGCACTGTGTCCGATGCC
GCACTTTGTTGAATCTGCCTGCCGCGCGACAACGAGTGTGCGATAGTTTT
GTACGTCCTAACCTGCTTGTGCCATTGACGTGTTCCCTGGCGGCGGTGGA
CGCGGAGGCGTGTGGCGGCTGCATGGCCCACCCCTTTCTTCCGCCGGTCG
TGAACATCCTCGGGGGTGTTAGTGGTTTGCGAACATGCATCATGTGTGCT
TTCCCCAAAAACAGTCGCTGTGATAGGAACGGTCGCTAAACCATTGGATA
TATTTTGCCTTTCAGCTTTCACTCGTGTTGAAAACGTGAAACTGAGGACG
ACACGAACGCCAGCGACCGCGATCTCTCGGCTCGGAGTTTTGGCCCCCGT
TATTGAAGGACAGCCATGCTCACAAACACGCCCGCCCGCCCGCCCATGAG
GCGGTCCCGGAGTGTGCTCTAGAAGTGCTTATGTGTGCCTCATGGGCTTA
CAGTCCGCATGTTGATTCGAGTGCCACAACAATGGCGGAACCAATTTGCA
ATGGCGACAATGAGTTGTGTCAAGGGTGTGTACGTCACAATATGACTGTG
CCATTCACGTGTTCACCAGCGGCGGCGGCGGCAGCAGATGCCTGAGGCAG
TTATACATAGCTACCTACATCTTCTCCATCGGTCGTGAACAACGATACAA
AATACTTCTAACGTCAAAACCTCAGACAGCCCGCGGCGTGTGTCAGCGGT
TTGGAAATAGGCAGCATGTATCCTGTCGCCCACACACAGCCACTGGGGGT
TGAAAGGTCGGTAAATCACTGTGTAGTTTCCACTCTTGTTATTACGGGGG
ACCATAGTTAATAGGACCAAATATAAAAATAGGGAAATATATAGGGTTTT
GTGTGTAACGTAGGTCCTATTTACTTTGGTCTCCCACAATAGGTACGTTA
AGCTATCATTGGATGTACGCAACGTACTGCTCGATCTCGGCCGTAACTGG
TTGACTTCCGTTACTGAAGTAGACGCTGGTACTAATTAACAATCACCCAC
CTCGCATGCGCTGGGCATATACAGAGACGTAGAACCTTAATCCTGGTTTG
GGGGTGTTGCCCTGGTGTGGGAAGGCGGGGTAAGGGAGTGACCATGCTAA
CGTCGTGATGTTTCTTTAGAGCCGTCGTGATTGCTAGACCGTGTACTACA
AACGTTCGCGTCGGCGCTCTGTATAGGTGTCTTTCGTGTTGACGGGTTCT
TCTCTCTAACCTTGTGGAAAATATGAGCGTTCGGTATGATAGGAGCTCAC
ACCAACTACTCCGTGTTCAGGAGAAATACGCTGAGGCCGAACAACTGTTC
AAGCGCTCGCTGGCGATCGATACGGAGGTGTACAGTTCTGATAACCTGGA
AGTTGCCACGGACCTATCCAACTTGGGAATGTTACTTGAAGCAATGGTGA
GCCCTACCTCCCAGTATCACTAGAGTGTTTGTGGCGCTAATTTGGAGCCC
AGTACTTATCCACGTTGCGCACTTTCCCAAGAAACGACTTCTACCCTACA
ATTTGAGAAACAACGGCCATATCGTTGGACACCAGACTCAATCCATGGTA
TGACGAGTGATCAATTGTCCTCTTGAAGTTGTTCACAGGAGGGACCACAG
GGAACATGGGATAGTGTAAACGGCACGGAATGAAGCCGTCACCGACAGCA
CTCCGGGGTGTTTTTTGTACGGTGGGCGACAAGTGCAAGACCCACTCACA
CCCCTTCCGGTGCAAAAGCCGCAGCAAATATCGAGGACCACGCTCATCAT
CAGCAAGAACAATCCGAGATCACGGCTCAAACACCGCTCCCAAGAATTGT
CTAAGAAGTGTTGCTCTGTGGGCCTGGTGGTCTTACAGACAGAATTTTGG
ATCCGGTGCCACACTTTCTTCTAGACAAATTGCCAAAGTGACAGTGAACT
TCGAACTCGTTTCAACCACACAGCATGATCGCATGGCATGCACACACGGC
GAGGTGGAAGCGGTTGCCGGTGGACGTCCAGAAATGCACTCTGGGCATAT
CGTCTCCAACAGTGACCAACGTCGAGTAATACATAGCTGGCGAGGCAACA
CAAGTTGGTCTGCGACCGTGCGAGCCTGTTAGGGAGCAGAAACAAGTACC
GTATCACACTGGGTGATAAGATAACACACCCTCTCAAACTTTTTTCAAAG
CTGATTTCCTTCAAAAACATGGGGGACTCACACAACGAAAATGGTGGCGT
CGGAAAGATTTCGTTTAGAAGGCTGCATAGACGCATCGCTCGTCGTACTC
AGTACGCCCTCCCCGTTCTCGAGAGATCCAGCTTTAAAAATCGACCGACG
GGGCGTGTTATCTGATCACCCTAGTGTGATAGTGTTATACGGCGTGCATC
CTATCCCCTACACGTATAACCACTACCCCTGTGGTTGAAAGAAGGCCAGA
AAGAAATCTGGGAGTGCCTCTCCTCTCCATCGATTCTCGTGGCGACTACC
TTGAACCTATGGCGGGGAGAACGACCAACACTGCATTCGACGCCTACCAA
GGAAGGGGTAACCGGTAACCCTTTTCGGCCGAATGTTTTCGGACTGACGG
AGCTGCTCGTCGAAGAAGTACCCGGTATCCCATTTGAGCTGCACAGCGTT
TTTACTTCGTCAGCACCCTACGTACACGCGCCAGTTCGTTATCCATCGGG
TTAACCCTACGCATTCCCTCAGGCGTCGCTTTGAGACAAGGTATGGAGCC
CATCAAGCGAGGAGCACCAGAAAACAATGGTTGATAACCCTGTCGCAGCA
CCCATCCTTCGTGCAGTGCTCCTGCTGGCATTGTTTGCCCCGCTTCCTGA
AGACGACACAACGGGTACCTACCTGCCTACACACACGTCCCATGTAGGAG
ACTTACGAAGATCCAGACCGTAAAAAACAATCATGAGTATGGCATCGTTG
GTTCGGGGCTGAGGGTAAGGAGCGGTCGTGGCGACGTAGCCCAAACGCTT
AACAACCAGGCGGGGCTGCCAAGTGTACAGTCACAGCTACTGTAACTGCT
CCAGGGGTATTTCCCTACGTTGTACATCTGGGGGGATTGCGCCCTGTAAC
AACCTTTGTTTCGCTGAAGTTGGCAAGCTCACACTGACGACTGCTGTACC
TCTTGTTTGGGGCAAGTACGCTGAGGCTGAGCCAGTCTCCAAGCCTGCGA
TGGCGATATCAGACGGAGATGTACGGTCCTGACCACCCCGAAGTCGCCAA
GTACTTCGGACATTTGGGTGATGCATTGAAGGGGCAGGTGCGAAGTGCGC
GCTTCCGACAACATTTGGCTCGTCCACGCGTTCCGACTATTATCGTCATC
ATTGTGGACATTGCAGGGTCCAAGTTCGTCGAGGCTAAACAACGCTGGAA
GCGCGTGCGTGATGAAGATACGGAAGGTGCAGGGTTCAAAGCGCGCGGAT
GCTGCCCAACCCCTCAGCAAGAGAATGTGGAGCATTGAGTATATATTTCA
TCTGATGTATATGTACGAATCATTGGATACTGTAGCTCCTACGCACGTCT
TCCTCCCATCAGGGCAAGCACGCAGAGGCCGATGCTGTATTTTGTCGGGC
TATGGAAACGTGGGAGAATATGGCGGGCCCTGATGCTCCCGATCTAGCCA
CAAGGCTCATGCGGCAGGCGGGGATATTGAGCAGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1040:22278..29565-

>mRNA_M-pyrifera_M_contig1040.855.1 ID=mRNA_M-pyrifera_M_contig1040.855.1|Name=mRNA_M-pyrifera_M_contig1040.855.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig1040:22278..29565- (Macrocystis pyrifera P11B4 male)
TCCCAACACCAGGGCAAGTACGAAGAGGCCGACGCTTTCTACGCCCGAGG
TATTGACAACCAAGAAAGAACTCTGGGCTCAGATCACCCCGATTTAGTCA
TATATCTCGACAACCGAGCGGGACTGTTGAGTAACCAATCCCAACACCAG
GGCAAGTACGAAGAGGCCGACGCTTTCTACGCCCGAGGTATTGACAACCA
AGAAAGAACTCTGGGCTCAGATCACCCCGATTTAGTCATATATCTCGACA
ACCGAGCGGGACTGTTGAGTAACCAAGGCAATTACGAGGAGGCCGACGCT
CTCTACGCTCGAGCAATTGATATTGGGGAAGCTTTGATTGGCCCTGATCA
CCCCGACCAAGCAACGCCTCTCAGCGACCGGGCTTGGGTGCTGACGAGTC
AGGGCAATTACGAGGAGGCCGACGCTCTCTACGCTCGAGCAATTGATATT
GGGGAAGCTTTGATTGGCCCTGATCACCCCGACCAAGCAACGCCTCTCAG
CGACCGGGCTTGGGTGCTGACGAGTCAGGGCAAGCACGCAGAGGCCGATG
CTGTATTTTGTCGGGCTATGGAAACGTGGGAGAATATGGCGGGCCCTGAT
GCTCCCGATCTAGCCACAAGGCTCATGCGGCAGGCGGGGATATTGAGCAG
GTAGGGCAAGCACGCAGAGGCCGATGCTGTATTTTGTCGGGCTATGGAAA
CGTGGGAGAATATGGCGGGCCCTGATGCTCCCGATCTAGCCACAAGGCTC
ATGCGGCAGGCGGGGATATTGAGCAGGTAG
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