mRNA_M-pyrifera_M_contig103985.847.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103985.847.1
Unique NamemRNA_M-pyrifera_M_contig103985.847.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103985.847.1 vs. uniprot
Match: A0A7C0YM59_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7C0YM59_9EURY)

HSP 1 Score: 62.4 bits (150), Expect = 2.290e-11
Identity = 29/67 (43.28%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   10 LWRLMIEHKELLFSGLGTLILATIGRIIFIRTRPTSSQSIQSGQQSTNIQANGDVEIKSGPKQRSGD 210
            +W  ++++K++LFSG+GT ++  +GR+IF +   +S+Q+I+SG  STNIQA GD+ +  G K+  GD
Sbjct:    1 MWSWVVDNKQVLFSGIGTAVVIGVGRLIFKKRSASSTQNIRSGDNSTNIQAGGDINV--GTKKTRGD 65
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BLAST of mRNA_M-pyrifera_M_contig103985.847.1 vs. uniprot
Match: A0A419DB39_9BACT (Uncharacterized protein n=1 Tax=candidate division WS5 bacterium TaxID=2093353 RepID=A0A419DB39_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.860e-10
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 MDELWRLMIEHKELLFSGLGTLILATIGRIIFIRTRPTSSQSIQSGQQSTNIQANGDVEIKSGPK 195
            M++    +I++KE LFSG G +I+A IGR+IF +TR +SSQ+I++G  S N+QA  DV I++  K
Sbjct:    1 MEDFVAWVIDNKEWLFSGAGIVIVAWIGRLIFKKTRDSSSQTIRAGDSSINVQAGRDVNIRTKKK 65
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BLAST of mRNA_M-pyrifera_M_contig103985.847.1 vs. uniprot
Match: UPI0012DF96C8 (hypothetical protein n=1 Tax=unclassified Thioalkalivibrio TaxID=2621013 RepID=UPI0012DF96C8)

HSP 1 Score: 54.7 bits (130), Expect = 2.580e-8
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 MDELWRLMIEHKELLFSGLGTLILATIGRIIFIRTRPTSSQSIQSGQQSTNIQANGDVEIKSGPKQRSGD 210
            M+E    ++++K+ LFSG G ++LA IGR IF +   +S+Q+I+SG  STN+QA  DV +  G K++  D
Sbjct:    1 MEEFVAWIVDNKQWLFSGAGLVVLAWIGRFIFKKKYASSTQTIRSGDGSTNVQAGRDVSV--GTKKKPND 68
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BLAST of mRNA_M-pyrifera_M_contig103985.847.1 vs. uniprot
Match: UPI000E3598C1 (hypothetical protein n=1 Tax=unclassified Bacillus (in: Bacteria) TaxID=185979 RepID=UPI000E3598C1)

HSP 1 Score: 50.8 bits (120), Expect = 7.750e-7
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:   22 MIEHKELLFSGLGTLILATIGRIIFIRTRPTSS-QSIQSGQQSTNIQANGDVEIKSGPK 195
            M+EH E +FSG+G L+++T+G I   + +   + QSI SG  STNIQ   DV++  G K
Sbjct:    5 MVEHIEWIFSGIGVLVISTVGGIFLKKRKDAKNIQSINSGDNSTNIQGGRDVKVTFGEK 63
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BLAST of mRNA_M-pyrifera_M_contig103985.847.1 vs. uniprot
Match: UPI001678A5D3 (hypothetical protein n=1 Tax=Arenicella chitinivorans TaxID=1329800 RepID=UPI001678A5D3)

HSP 1 Score: 48.5 bits (114), Expect = 7.930e-6
Identity = 23/53 (43.40%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   22 MIEHKELLFSGLGTLILATIGRIIFIRTRPTSSQSIQSGQQSTNIQANGDVEI 180
            ++ +KE LFSG+G ++LA IGR  F +   + +Q+I+SG  S+N+Q   DV I
Sbjct:   12 VVANKEWLFSGVGVVVLACIGRFFFNKRSASLTQTIKSGNSSSNVQVGRDVNI 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103985.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7C0YM59_9EURY2.290e-1143.28Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A419DB39_9BACT2.860e-1047.69Uncharacterized protein n=1 Tax=candidate division... [more]
UPI0012DF96C82.580e-842.86hypothetical protein n=1 Tax=unclassified Thioalka... [more]
UPI000E3598C17.750e-744.07hypothetical protein n=1 Tax=unclassified Bacillus... [more]
UPI001678A5D37.930e-643.40hypothetical protein n=1 Tax=Arenicella chitinivor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103985contigM-pyrifera_M_contig103985:95..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size213
Cds size213
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.661842-CDS-M-pyrifera_M_contig103985:94..3071622815545.661842-CDS-M-pyrifera_M_contig103985:94..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103985 95..307 +
1692277457.4751475-CDS-M-pyrifera_M_contig103985:94..3071692277457.4751475-CDS-M-pyrifera_M_contig103985:94..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103985 95..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103985.847.1prot_M-pyrifera_M_contig103985.847.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103985 95..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103985.847.1

>prot_M-pyrifera_M_contig103985.847.1 ID=prot_M-pyrifera_M_contig103985.847.1|Name=mRNA_M-pyrifera_M_contig103985.847.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MDELWRLMIEHKELLFSGLGTLILATIGRIIFIRTRPTSSQSIQSGQQST
NIQANGDVEIKSGPKQRSGD*
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mRNA from alignment at M-pyrifera_M_contig103985:95..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103985.847.1 ID=mRNA_M-pyrifera_M_contig103985.847.1|Name=mRNA_M-pyrifera_M_contig103985.847.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig103985:95..307+ (Macrocystis pyrifera P11B4 male)
ATGGATGAACTTTGGCGTTTGATGATAGAGCACAAAGAGTTGCTATTTTC
TGGGCTCGGGACGCTGATATTAGCCACGATTGGTCGCATCATTTTTATTC
GCACTCGACCAACCTCTTCTCAGAGTATTCAATCCGGACAACAGTCAACG
AACATTCAAGCGAACGGCGACGTTGAAATCAAAAGTGGGCCGAAACAGAG
AAGTGGGGATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103985:95..307+

>mRNA_M-pyrifera_M_contig103985.847.1 ID=mRNA_M-pyrifera_M_contig103985.847.1|Name=mRNA_M-pyrifera_M_contig103985.847.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig103985:95..307+ (Macrocystis pyrifera P11B4 male)
ATGGATGAACTTTGGCGTTTGATGATAGAGCACAAAGAGTTGCTATTTTC
TGGGCTCGGGACGCTGATATTAGCCACGATTGGTCGCATCATTTTTATTC
GCACTCGACCAACCTCTTCTCAGAGTATTCAATCCGGACAACAGTCAACG
AACATTCAAGCGAACGGCGACGTTGAAATCAAAAGTGGGCCGAAACAGAG
AAGTGGGGATTAAATGGATGAACTTTGGCGTTTGATGATAGAGCACAAAG
AGTTGCTATTTTCTGGGCTCGGGACGCTGATATTAGCCACGATTGGTCGC
ATCATTTTTATTCGCACTCGACCAACCTCTTCTCAGAGTATTCAATCCGG
ACAACAGTCAACGAACATTCAAGCGAACGGCGACGTTGAAATCAAAAGTG
GGCCGAAACAGAGAAGTGGGGATTAA
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