mRNA_M-pyrifera_M_contig103983.846.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103983.846.1
Unique NamemRNA_M-pyrifera_M_contig103983.846.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A0L0D8B3_THETB (Peptidylprolyl isomerase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D8B3_THETB)

HSP 1 Score: 88.6 bits (218), Expect = 3.470e-19
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 KVGSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            K G T+ VHCTGTI+RTGKKFWSTKDPGQ  FSF IG+G VI+AWD G++ M  G
Sbjct:   20 KAGDTITVHCTGTIKRTGKKFWSTKDPGQKPFSFTIGQGSVIRAWDEGLLGMKNG 74
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A7S4QNA8_9DINO (Peptidylprolyl isomerase n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QNA8_9DINO)

HSP 1 Score: 77.8 bits (190), Expect = 6.030e-17
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 KVGSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            + GSTV +H TG +Q+TGKKFWSTKDPGQ  F+++ G GKVIK WD+G + M  G
Sbjct:   47 QAGSTVTLHATGVVQQTGKKFWSTKDPGQQPFTYQAGVGKVIKGWDQGCLGMQIG 101
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A6P4YD62_BRABE (Peptidylprolyl isomerase n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YD62_BRABE)

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-16
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    7 GSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            G+T+ VHCTG +    KKFWSTKDPGQ  F+F++G GKVI+ WD G + M++G
Sbjct:   24 GNTITVHCTGNLVNPPKKFWSTKDPGQKPFTFQVGMGKVIQGWDEGCLSMSQG 76
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A8K0EZ95_BRALA (FKBP1A protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EZ95_BRALA)

HSP 1 Score: 75.9 bits (185), Expect = 1.360e-16
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 KVGSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            K G+T+ VHCTG +    KKFWSTKDPGQ  F+F++G GKVI+ WD G + M +G
Sbjct:   22 KTGNTITVHCTGNLVTPPKKFWSTKDPGQKPFTFQVGLGKVIQGWDEGCLSMHKG 76
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: F2UPF5_SALR5 (Peptidylprolyl isomerase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UPF5_SALR5)

HSP 1 Score: 75.9 bits (185), Expect = 1.850e-16
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    7 GSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            G+ + VHCTG +  +GKKFWSTKDPGQ TFSF++G G+VIK WD G M M +G
Sbjct:   26 GANITVHCTGYLD-SGKKFWSTKDPGQQTFSFKVGLGQVIKGWDEGCMTMQKG 77
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A8J1UPV6_OWEFU (Peptidylprolyl isomerase n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UPV6_OWEFU)

HSP 1 Score: 75.5 bits (184), Expect = 2.690e-16
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 GSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            G T+ VHCTG++    KKFWSTKDPGQ  FSF++G GKVI  WD+G + M +G
Sbjct:   25 GQTITVHCTGSLTTPPKKFWSTKDPGQQPFSFQVGLGKVIAGWDQGCLTMKQG 77
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A7S1DEF7_HEMAN (Peptidylprolyl isomerase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DEF7_HEMAN)

HSP 1 Score: 75.9 bits (185), Expect = 3.680e-16
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    7 GSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            G+TV VH TGT++ TGKKFWSTKDPGQ +F+++ G GKVI  WD+G + M  G
Sbjct:   52 GNTVTVHATGTVKETGKKFWSTKDPGQQSFTYQAGVGKVIVGWDQGCLGMKVG 104
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A087TDP3_STEMI (Peptidylprolyl isomerase (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087TDP3_STEMI)

HSP 1 Score: 75.9 bits (185), Expect = 3.770e-16
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 GSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            GST+ VHCTG +    KKFWSTKDPGQS F+F++G GKVIK WD   + M +G
Sbjct:   27 GSTITVHCTGCLANPLKKFWSTKDPGQSPFTFQVGLGKVIKGWDEACLTMQQG 79
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A7S4UJU2_9DINO (Peptidylprolyl isomerase n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UJU2_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 4.110e-16
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 KVGSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEMAEG 165
            + G+TV V+ TG +Q+TGKKFWSTKDPGQ  F+++ G GKVIK WD+G + M  G
Sbjct:   26 QAGNTVTVNATGVVQQTGKKFWSTKDPGQQPFTYQAGVGKVIKGWDQGCLGMQIG 80
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BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Match: A0A2R5LFQ8_9ACAR (Peptidylprolyl isomerase n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A2R5LFQ8_9ACAR)

HSP 1 Score: 74.7 bits (182), Expect = 5.980e-16
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 KVGSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVMEM 156
            K G T+ VHCTG++    KKFWSTKDPGQ+ F+F++G G+VIK WD G + M
Sbjct:   25 KAGDTITVHCTGSLTNPPKKFWSTKDPGQTPFTFKVGVGQVIKGWDEGCLAM 76
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103983.846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0D8B3_THETB3.470e-1969.09Peptidylprolyl isomerase n=1 Tax=Thecamonas trahen... [more]
A0A7S4QNA8_9DINO6.030e-1760.00Peptidylprolyl isomerase n=2 Tax=Alexandrium monil... [more]
A0A6P4YD62_BRABE1.300e-1656.60Peptidylprolyl isomerase n=4 Tax=Branchiostoma Tax... [more]
A0A8K0EZ95_BRALA1.360e-1656.36FKBP1A protein n=1 Tax=Branchiostoma lanceolatum T... [more]
F2UPF5_SALR51.850e-1662.26Peptidylprolyl isomerase n=1 Tax=Salpingoeca roset... [more]
A0A8J1UPV6_OWEFU2.690e-1658.49Peptidylprolyl isomerase n=1 Tax=Owenia fusiformis... [more]
A0A7S1DEF7_HEMAN3.680e-1660.38Peptidylprolyl isomerase n=2 Tax=Hemiselmis anders... [more]
A0A087TDP3_STEMI3.770e-1660.38Peptidylprolyl isomerase (Fragment) n=2 Tax=Stegod... [more]
A0A7S4UJU2_9DINO4.110e-1658.18Peptidylprolyl isomerase n=2 Tax=Alexandrium monil... [more]
A0A2R5LFQ8_9ACAR5.980e-1657.69Peptidylprolyl isomerase n=2 Tax=Ornithodoros TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103983contigM-pyrifera_M_contig103983:338..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog529818.AMSG_11601T0
Preferred nameTIMELESS
KEGG koko:K01802,ko:K03155,ko:K10997,ko:K14554
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000122,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000403,GO:0000785,GO:0000790,GO:0000819,GO:0001655,GO:0001657,GO:0001658,GO:0001763,GO:0001822,GO:0001823,GO:0002009,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007063,GO:0007064,GO:0007093,GO:0007135,GO:0007275,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007623,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009582,GO:0009605,GO:0009628,GO:0009636,GO:0009649,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010389,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010948,GO:0010972,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030323,GO:0030324,GO:0031297,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031570,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032505,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0035239,GO:0035295,GO:0035690,GO:0035822,GO:0042221,GO:0042493,GO:0042752,GO:0042753,GO:0042802,GO:0042803,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044774,GO:0044818,GO:0045005,GO:0045132,GO:0045144,GO:0045165,GO:0045739,GO:0045786,GO:0045892,GO:0045910,GO:0045930,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046677,GO:0046982,GO:0046983,GO:0048285,GO:0048478,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051177,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051606,GO:0051716,GO:0051726,GO:0051983,GO:0060255,GO:0060429,GO:0060541,GO:0060562,GO:0060675,GO:0060993,GO:0061138,GO:0061326,GO:0061333,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070192,GO:0070887,GO:0071236,GO:0071241,GO:0071310,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0072001,GO:0072006,GO:0072009,GO:0072028,GO:0072073,GO:0072078,GO:0072080,GO:0072088,GO:0072163,GO:0072164,GO:0072171,GO:0072710,GO:0072711,GO:0072718,GO:0072719,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0097159,GO:0097237,GO:0097327,GO:0097329,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902679,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1903506,GO:1903507,GO:1904975,GO:1904976,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000781,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.negative regulation of DNA replication
EggNOG OGsCOG0545@1,KOG0544@2759,KOG1974@1,KOG1974@2759
EC5.2.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036,ko03400
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.616267-CDS-M-pyrifera_M_contig103983:337..4531622815545.616267-CDS-M-pyrifera_M_contig103983:337..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103983 338..453 +
1692277457.4417677-CDS-M-pyrifera_M_contig103983:337..4531692277457.4417677-CDS-M-pyrifera_M_contig103983:337..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103983 338..453 +
1622815545.626712-CDS-M-pyrifera_M_contig103983:590..6391622815545.626712-CDS-M-pyrifera_M_contig103983:590..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103983 591..639 +
1692277457.4662414-CDS-M-pyrifera_M_contig103983:590..6391692277457.4662414-CDS-M-pyrifera_M_contig103983:590..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103983 591..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103983.846.1prot_M-pyrifera_M_contig103983.846.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103983 338..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103983.846.1

>prot_M-pyrifera_M_contig103983.846.1 ID=prot_M-pyrifera_M_contig103983.846.1|Name=mRNA_M-pyrifera_M_contig103983.846.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
KVGSTVEVHCTGTIQRTGKKFWSTKDPGQSTFSFEIGKGKVIKAWDRGVM
EMAEG
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mRNA from alignment at M-pyrifera_M_contig103983:338..639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103983.846.1 ID=mRNA_M-pyrifera_M_contig103983.846.1|Name=mRNA_M-pyrifera_M_contig103983.846.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=302bp|location=Sequence derived from alignment at M-pyrifera_M_contig103983:338..639+ (Macrocystis pyrifera P11B4 male)
AAGGTAGGAAGCACAGTGGAAGTGCACTGCACAGGCACGATCCAGCGTAC
TGGAAAGAAGTTTTGGTCCACCAAGGACCCAGGACAATCTACGTTCTCTT
TTGAGATCGGAAAAGGGTAGGTGAAGATGGGTTTGATGGGATGGAAGGGG
TGGTAGTGGGTTGGAGGGTCGAGGATTTGGGGAAAAATGGACTGGGAATT
TTGAGGAGGGTTGGTGGTTGTGGAAGTTTGGAGTATTGTGGGTATGTTTG
CAGGAAAGTAATCAAAGCATGGGATAGAGGGGTGATGGAAATGGCTGAAG
GT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103983:338..639+

>mRNA_M-pyrifera_M_contig103983.846.1 ID=mRNA_M-pyrifera_M_contig103983.846.1|Name=mRNA_M-pyrifera_M_contig103983.846.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig103983:338..639+ (Macrocystis pyrifera P11B4 male)
AAGGTAGGAAGCACAGTGGAAGTGCACTGCACAGGCACGATCCAGCGTAC
TGGAAAGAAGTTTTGGTCCACCAAGGACCCAGGACAATCTACGTTCTCTT
TTGAGATCGGAAAAGGAAGGTAGGAAGCACAGTGGAAGTGCACTGCACAG
GCACGATCCAGCGTACTGGAAAGAAGTTTTGGTCCACCAAGGACCCAGGA
CAATCTACGTTCTCTTTTGAGATCGGAAAAGGGAAAGTAATCAAAGCATG
GGATAGAGGGGTGATGGAAATGGCTGAAGGTGAAAGTAATCAAAGCATGG
GATAGAGGGGTGATGGAAATGGCTGAAGGT
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