mRNA_M-pyrifera_M_contig103942.835.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103942.835.1
Unique NamemRNA_M-pyrifera_M_contig103942.835.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103942.835.1 vs. uniprot
Match: A0A2D4TA49_9GAMM (Non-specific serine/threonine protein kinase n=7 Tax=Halieaceae TaxID=1706372 RepID=A0A2D4TA49_9GAMM)

HSP 1 Score: 395 bits (1014), Expect = 1.060e-134
Identity = 194/209 (92.82%), Postives = 198/209 (94.74%), Query Frame = 1
Query:    1 AAQLRQWRSSLRDVGGPYFRQEVSDDLRLQIPRSLSRQARSRMPPRPGEWAVFGFGRYWRRRHWLMAAATVACALAVALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLLMTLREQMLAVRPGLMFQGESAPFYPSTLDHTLRPPEETLQITLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRAVAELFAADP 627
            AAQ RQ RS LRD   PYFRQE SDDL LQIPRSLSRQARSRMPPRPGEWA+FGFGRYWRRRHWL AAATVACAL VALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLL+TLREQMLAVRPGL+FQGESAPFYPSTLDHT RPPEETLQI+LHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRAVAELFAADP
Sbjct:  265 AAQPRQLRSPLRDEAEPYFRQEASDDLPLQIPRSLSRQARSRMPPRPGEWALFGFGRYWRRRHWLTAAATVACALTVALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLLLTLREQMLAVRPGLLFQGESAPFYPSTLDHTRRPPEETLQISLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRAVAELFAADP 473          
BLAST of mRNA_M-pyrifera_M_contig103942.835.1 vs. uniprot
Match: A0A3C1KIZ6_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Haliea salexigens TaxID=287487 RepID=A0A3C1KIZ6_9GAMM)

HSP 1 Score: 305 bits (780), Expect = 8.360e-104
Identity = 147/155 (94.84%), Postives = 152/155 (98.06%), Query Frame = 1
Query:   85 LQIPRSLSRQARSRMPPRPGEWAVFGFGRYWRRRHWLMAAATVACALAVALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLLMTLREQMLAVRPGLMFQGESAPFYPSTLDHTLRPPEETLQITLHCSPALCVLGLERERGGAYRYRQAL 549
            +QIPRSLSRQARSRMPPRPGEWA+FGFGRYWRRRHWL AAATVACAL VALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLL+TLREQMLAVRPGL+FQGESAPFYPSTLDHT RPPEETLQI+LHCSPALCVLGLERERGGAYRYRQAL
Sbjct:    1 MQIPRSLSRQARSRMPPRPGEWALFGFGRYWRRRHWLTAAATVACALTVALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLLLTLREQMLAVRPGLLFQGESAPFYPSTLDHTRRPPEETLQISLHCSPALCVLGLERERGGAYRYRQAL 155          
BLAST of mRNA_M-pyrifera_M_contig103942.835.1 vs. uniprot
Match: A0A2E7C6E4_9GAMM (Non-specific serine/threonine protein kinase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C6E4_9GAMM)

HSP 1 Score: 291 bits (744), Expect = 3.740e-93
Identity = 145/208 (69.71%), Postives = 159/208 (76.44%), Query Frame = 1
Query:    4 AQLRQWRSSLRDVGGPYFRQEVSDDLRLQIPRSLSRQARSRMPPRPGEWAVFGFGRYWRRRHWLMAAATVACALAVALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLLMTLREQMLAVRPGLMFQGESAPFYPSTLDHTLRPPEETLQITLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRAVAELFAADP 627
            AQ RQ RS LRD    +FR E SDDL LQIPRSLSRQ RSRMP   G+W+V G GR WRRRHWL AAA + C  A ALFALWPRD R+ VPRPLVVLE   AAL  + GVEG+L  +REQ+LA RPGL F GE  PF+P+ LDH L PP ETL+I L CSPALCVLGLERERGGAYRYRQALVP G+P HRW+ L GRA AELFAADP
Sbjct:  325 AQPRQLRSPLRDEAERFFRTEDSDDLPLQIPRSLSRQGRSRMPRPSGQWSVLGLGRDWRRRHWLAAAAALVCVTAAALFALWPRDYRVTVPRPLVVLESGSAALSNAGGVEGVLALVREQLLAERPGLQFHGELPPFFPTVLDHNLPPPPETLRIALQCSPALCVLGLERERGGAYRYRQALVPTGAPEHRWRALAGRAAAELFAADP 532          
BLAST of mRNA_M-pyrifera_M_contig103942.835.1 vs. uniprot
Match: A0A3D1GJE2_9GAMM (Uncharacterized protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A3D1GJE2_9GAMM)

HSP 1 Score: 219 bits (559), Expect = 9.200e-71
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 1
Query:  289 VLEPAHAALPGSDGVEGLLMTLREQMLAVRPGLMFQGESAPFYPSTLDHTLRPPEETLQITLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRAVAELFAADP 627
            +LEPAHAAL GSDGVEGLL+TLREQMLAVRPGL+FQGESAPFYP TLDHT RPPEETLQI+LHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGR VAELFAADP
Sbjct:    1 MLEPAHAALAGSDGVEGLLLTLREQMLAVRPGLLFQGESAPFYPRTLDHTRRPPEETLQISLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRTVAELFAADP 113          
BLAST of mRNA_M-pyrifera_M_contig103942.835.1 vs. uniprot
Match: A0A2N5Y3J3_9GAMM (Non-specific serine/threonine protein kinase n=2 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y3J3_9GAMM)

HSP 1 Score: 159 bits (401), Expect = 2.020e-42
Identity = 91/200 (45.50%), Postives = 113/200 (56.50%), Query Frame = 1
Query:   31 LRDVGGPYFRQEVSDDLRLQIPRSLSRQARSRMPPRPGEWAVFGFGRYWRRRHWLMAAATVACALAVALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLLMTLREQMLAVRPGLMFQGESAPFYPSTLDHTLR-----PPEETLQITLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRAVAELF 615
            L D     FR+E + +  LQIP  L  Q RSRMP R G+WA+FG GR WRRRHWL+    V   L + L ALWPR  R+ VP P + +  A + LP       LL  +R+  L V P L+F GE+  F  +TLD++L      PP E L I+L C  ALCVLGLER      RYRQ L+   +PA  W EL   AV EL+
Sbjct:  322 LGDEARAAFREEAATEQPLQIPAGLRNQGRSRMPLRAGQWALFGVGRDWRRRHWLVGGGAVLTCLGLLLVALWPRAHRVHVPMPQLAIS-AASPLPADRVDPWLLEQVRDLSLQVAPTLVFTGEAPGFRSTTLDNSLEALRRPPPPEQLLISLSCQQALCVLGLERRAENWQRYRQVLLVPDAPAAHWHELIALAVNELY 520          
BLAST of mRNA_M-pyrifera_M_contig103942.835.1 vs. uniprot
Match: A0A6C0U6R7_9GAMM (Non-specific serine/threonine protein kinase n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U6R7_9GAMM)

HSP 1 Score: 156 bits (394), Expect = 1.060e-41
Identity = 85/196 (43.37%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   55 FRQEVSDDLRLQIPRSLSRQARSRMPPRPGEWAVFGFGRYWRRRHWLMAAATVACALAVALFALWPRDQRLAVPRPLVVLEPAHAALPGSDGVEGLLMTLREQMLAVRPGLMFQGESAPFYPSTLDHTLR-----PPEETLQITLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRAVAELFAADP 627
            FR+E +D+L LQIP  L    RSRMP RPG+WA+FGFGR+WRR  WL AAA +A  +A++L   WPR   + VP P    +  ++ LP       LL  L +  L   P L F GE+  F  + +D +L      PP E L I+L+C   +CVLGLER+R    RYRQAL+  G+PA  W+E+    V +L+ + P
Sbjct:  283 FREETADELPLQIPPGLRSHGRSRMPLRPGQWALFGFGRHWRRSQWLGAAAGLALVVALSLTWFWPRANYVFVPSPQWRYD-GNSDLPAGTDTLWLLQQLHQLSLQADPSLRFSGEAPVFRSTKVDRSLAALRRPPPPEHLLISLNCQAGICVLGLERQRENWQRYRQALLLPGAPASHWREVMDVTVQQLYGSSP 477          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103942.835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2D4TA49_9GAMM1.060e-13492.82Non-specific serine/threonine protein kinase n=7 T... [more]
A0A3C1KIZ6_9GAMM8.360e-10494.84Uncharacterized protein (Fragment) n=1 Tax=Haliea ... [more]
A0A2E7C6E4_9GAMM3.740e-9369.71Non-specific serine/threonine protein kinase n=1 T... [more]
A0A3D1GJE2_9GAMM9.200e-7192.92Uncharacterized protein n=1 Tax=Halieaceae bacteri... [more]
A0A2N5Y3J3_9GAMM2.020e-4245.50Non-specific serine/threonine protein kinase n=2 T... [more]
A0A6C0U6R7_9GAMM1.060e-4143.37Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103942contigM-pyrifera_M_contig103942:2..631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score390.6
Seed ortholog evalue4.7e-106
Seed eggNOG ortholog1121937.AUHJ01000014_gene2672
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs1MV1P@1224,1RSKR@1236,46BA9@72275,COG0515@1,COG0515@2
COG Functional cat.KLT
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size630
Cds size630
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.076618-CDS-M-pyrifera_M_contig103942:1..6311622815545.076618-CDS-M-pyrifera_M_contig103942:1..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103942 2..631 +
1692277457.2473335-CDS-M-pyrifera_M_contig103942:1..6311692277457.2473335-CDS-M-pyrifera_M_contig103942:1..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103942 2..631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103942.835.1prot_M-pyrifera_M_contig103942.835.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103942 2..631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103942.835.1

>prot_M-pyrifera_M_contig103942.835.1 ID=prot_M-pyrifera_M_contig103942.835.1|Name=mRNA_M-pyrifera_M_contig103942.835.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
AAQLRQWRSSLRDVGGPYFRQEVSDDLRLQIPRSLSRQARSRMPPRPGEW
AVFGFGRYWRRRHWLMAAATVACALAVALFALWPRDQRLAVPRPLVVLEP
AHAALPGSDGVEGLLMTLREQMLAVRPGLMFQGESAPFYPSTLDHTLRPP
EETLQITLHCSPALCVLGLERERGGAYRYRQALVPQGSPAHRWQELTGRA
VAELFAADP*
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mRNA from alignment at M-pyrifera_M_contig103942:2..631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103942.835.1 ID=mRNA_M-pyrifera_M_contig103942.835.1|Name=mRNA_M-pyrifera_M_contig103942.835.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig103942:2..631+ (Macrocystis pyrifera P11B4 male)
GCGGCACAGCTACGGCAGTGGCGGTCGTCGTTGCGCGATGTGGGGGGGCC ATATTTTCGCCAGGAGGTCAGTGACGATCTGCGATTGCAGATTCCGCGCA GCCTCAGCCGACAGGCGCGCTCGCGCATGCCGCCGCGGCCGGGTGAATGG GCAGTATTCGGTTTTGGCCGGTATTGGCGGCGGCGGCACTGGCTCATGGC GGCCGCTACAGTGGCCTGTGCGCTAGCGGTTGCGCTGTTTGCGCTCTGGC CCCGGGATCAGCGGCTTGCCGTGCCGCGGCCGCTGGTTGTACTGGAGCCC GCGCACGCAGCCCTGCCCGGGAGTGATGGCGTTGAGGGCCTGCTGATGAC CTTGCGCGAACAAATGCTGGCCGTGAGGCCGGGGCTGATGTTTCAGGGAG AATCGGCGCCGTTCTATCCCAGCACACTTGACCATACCCTGCGACCGCCG GAGGAAACGCTGCAGATCACGCTGCACTGTTCTCCGGCACTGTGTGTGCT CGGCCTTGAACGGGAACGTGGCGGGGCGTATCGCTACCGGCAGGCGCTGG TGCCGCAGGGGTCGCCCGCACATCGCTGGCAGGAACTGACTGGCAGGGCC GTAGCGGAGCTGTTCGCGGCGGACCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103942:2..631+

>mRNA_M-pyrifera_M_contig103942.835.1 ID=mRNA_M-pyrifera_M_contig103942.835.1|Name=mRNA_M-pyrifera_M_contig103942.835.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig103942:2..631+ (Macrocystis pyrifera P11B4 male)
GCGGCACAGCTACGGCAGTGGCGGTCGTCGTTGCGCGATGTGGGGGGGCC
ATATTTTCGCCAGGAGGTCAGTGACGATCTGCGATTGCAGATTCCGCGCA
GCCTCAGCCGACAGGCGCGCTCGCGCATGCCGCCGCGGCCGGGTGAATGG
GCAGTATTCGGTTTTGGCCGGTATTGGCGGCGGCGGCACTGGCTCATGGC
GGCCGCTACAGTGGCCTGTGCGCTAGCGGTTGCGCTGTTTGCGCTCTGGC
CCCGGGATCAGCGGCTTGCCGTGCCGCGGCCGCTGGTTGTACTGGAGCCC
GCGCACGCAGCCCTGCCCGGGAGTGATGGCGTTGAGGGCCTGCTGATGAC
CTTGCGCGAACAAATGCTGGCCGTGAGGCCGGGGCTGATGTTTCAGGGAG
AATCGGCGCCGTTCTATCCCAGCACACTTGACCATACCCTGCGACCGCCG
GAGGAAACGCTGCAGATCACGCTGCACTGTTCTCCGGCACTGTGTGTGCT
CGGCCTTGAACGGGAACGTGGCGGGGCGTATCGCTACCGGCAGGCGCTGG
TGCCGCAGGGGTCGCCCGCACATCGCTGGCAGGAACTGACTGGCAGGGCC
GTAGCGGAGCTGTTCGCGGCGGACCCCTGAGCGGCACAGCTACGGCAGTG
GCGGTCGTCGTTGCGCGATGTGGGGGGGCCATATTTTCGCCAGGAGGTCA
GTGACGATCTGCGATTGCAGATTCCGCGCAGCCTCAGCCGACAGGCGCGC
TCGCGCATGCCGCCGCGGCCGGGTGAATGGGCAGTATTCGGTTTTGGCCG
GTATTGGCGGCGGCGGCACTGGCTCATGGCGGCCGCTACAGTGGCCTGTG
CGCTAGCGGTTGCGCTGTTTGCGCTCTGGCCCCGGGATCAGCGGCTTGCC
GTGCCGCGGCCGCTGGTTGTACTGGAGCCCGCGCACGCAGCCCTGCCCGG
GAGTGATGGCGTTGAGGGCCTGCTGATGACCTTGCGCGAACAAATGCTGG
CCGTGAGGCCGGGGCTGATGTTTCAGGGAGAATCGGCGCCGTTCTATCCC
AGCACACTTGACCATACCCTGCGACCGCCGGAGGAAACGCTGCAGATCAC
GCTGCACTGTTCTCCGGCACTGTGTGTGCTCGGCCTTGAACGGGAACGTG
GCGGGGCGTATCGCTACCGGCAGGCGCTGGTGCCGCAGGGGTCGCCCGCA
CATCGCTGGCAGGAACTGACTGGCAGGGCCGTAGCGGAGCTGTTCGCGGC
GGACCCCTGA
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