mRNA_M-pyrifera_M_contig103934.831.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103934.831.1
Unique NamemRNA_M-pyrifera_M_contig103934.831.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: A0A811RGI2_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RGI2_9POAL)

HSP 1 Score: 72.4 bits (176), Expect = 1.260e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  131 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: UPI0019D62FFA (suppressor of mec-8 and unc-52 protein homolog 2-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D62FFA)

HSP 1 Score: 72.4 bits (176), Expect = 4.160e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  302 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 377
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: A0A3L6RAJ3_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6RAJ3_PANMI)

HSP 1 Score: 72.4 bits (176), Expect = 4.280e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  319 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 394
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: A0A811SKB1_9POAL (Hypothetical protein (Fragment) n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811SKB1_9POAL)

HSP 1 Score: 72.4 bits (176), Expect = 4.350e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  334 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 409
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: A0A1B6PPW9_SORBI (Uncharacterized protein n=12 Tax=Panicoideae TaxID=147369 RepID=A0A1B6PPW9_SORBI)

HSP 1 Score: 72.4 bits (176), Expect = 4.550e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  459 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 534
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: A4L9Q6_MAIZE (Putative splicing factor n=6 Tax=Panicoideae TaxID=147369 RepID=A4L9Q6_MAIZE)

HSP 1 Score: 72.4 bits (176), Expect = 4.550e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  459 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 534
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: I1INU8_BRADI (Uncharacterized protein n=19 Tax=Pooideae TaxID=147368 RepID=I1INU8_BRADI)

HSP 1 Score: 72.4 bits (176), Expect = 4.560e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  468 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKIN 543
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: K3ZHW1_SETIT (Uncharacterized protein n=7 Tax=PACMAD clade TaxID=147370 RepID=K3ZHW1_SETIT)

HSP 1 Score: 72.4 bits (176), Expect = 4.560e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  467 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLNNDLHKIN 542
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: A0A3L6FII8_MAIZE (Suppressor of mec-8 and unc-52 2 n=7 Tax=Panicoideae TaxID=147369 RepID=A0A3L6FII8_MAIZE)

HSP 1 Score: 72.4 bits (176), Expect = 4.590e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  561 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 636
[Close]
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Match: A0A811RF06_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811RF06_9POAL)

HSP 1 Score: 72.4 bits (176), Expect = 4.630e-13
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    1 GSDDED-FSKMDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRKKLKKAAANSHDYHKVS 225
            GSDDED  SKMD G   K  L  WDF T+EEW +Y + +EA P+AAFQ+G+K  D RK +K  K    ++D HK++
Sbjct:  732 GSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKIN 807
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103934.831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A811RGI2_9POAL1.260e-1350.00Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
UPI0019D62FFA4.160e-1350.00suppressor of mec-8 and unc-52 protein homolog 2-l... [more]
A0A3L6RAJ3_PANMI4.280e-1350.00Uncharacterized protein n=1 Tax=Panicum miliaceum ... [more]
A0A811SKB1_9POAL4.350e-1350.00Hypothetical protein (Fragment) n=1 Tax=Miscanthus... [more]
A0A1B6PPW9_SORBI4.550e-1350.00Uncharacterized protein n=12 Tax=Panicoideae TaxID... [more]
A4L9Q6_MAIZE4.550e-1350.00Putative splicing factor n=6 Tax=Panicoideae TaxID... [more]
I1INU8_BRADI4.560e-1350.00Uncharacterized protein n=19 Tax=Pooideae TaxID=14... [more]
K3ZHW1_SETIT4.560e-1350.00Uncharacterized protein n=7 Tax=PACMAD clade TaxID... [more]
A0A3L6FII8_MAIZE4.590e-1350.00Suppressor of mec-8 and unc-52 2 n=7 Tax=Panicoide... [more]
A0A811RF06_9POAL4.630e-1350.00Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103934contigM-pyrifera_M_contig103934:84..320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog15368.BRADI4G26590.1
KEGG koko:K13109
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016070,GO:0016071,GO:0022402,GO:0030071,GO:0031577,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051641,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070013,GO:0070727,GO:0071005,GO:0071011,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0090304,GO:1901360,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:1990904,GO:2000816,GO:2001251
EggNOG free text desc.RED-like protein N-terminal region
EggNOG OGs37HSK@33090,3G8V3@35493,3IDWG@38820,3KW25@4447,KOG2498@1,KOG2498@2759
COG Functional cat.T
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size237
Cds size210
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.88501-UTR-M-pyrifera_M_contig103934:83..1101622815544.88501-UTR-M-pyrifera_M_contig103934:83..110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103934 84..110 +
1692277457.1337774-UTR-M-pyrifera_M_contig103934:83..1101692277457.1337774-UTR-M-pyrifera_M_contig103934:83..110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103934 84..110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.8957865-CDS-M-pyrifera_M_contig103934:110..3201622815544.8957865-CDS-M-pyrifera_M_contig103934:110..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103934 111..320 +
1692277457.1451814-CDS-M-pyrifera_M_contig103934:110..3201692277457.1451814-CDS-M-pyrifera_M_contig103934:110..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103934 111..320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103934.831.1prot_M-pyrifera_M_contig103934.831.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103934 111..320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103934.831.1

>prot_M-pyrifera_M_contig103934.831.1 ID=prot_M-pyrifera_M_contig103934.831.1|Name=mRNA_M-pyrifera_M_contig103934.831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MDTGATNKKELRPWDFNTQEEWERYMNTREATPEAAFQYGMKKGDRRKRK
KLKKAAANSHDYHKVSGKR*
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mRNA from alignment at M-pyrifera_M_contig103934:84..320+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103934.831.1 ID=mRNA_M-pyrifera_M_contig103934.831.1|Name=mRNA_M-pyrifera_M_contig103934.831.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig103934:84..320+ (Macrocystis pyrifera P11B4 male)
GGTAGTGACGACGAGGACTTCAGCAAGATGGACACTGGTGCGACGAACAA
GAAGGAGCTGCGGCCGTGGGACTTCAACACCCAGGAGGAGTGGGAGCGCT
ACATGAACACACGCGAGGCCACGCCAGAGGCGGCCTTCCAGTATGGCATG
AAGAAGGGCGATCGCAGGAAGCGCAAGAAGCTCAAGAAGGCGGCCGCCAA
CTCGCACGACTATCACAAGGTCAGCGGCAAGCGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103934:84..320+

>mRNA_M-pyrifera_M_contig103934.831.1 ID=mRNA_M-pyrifera_M_contig103934.831.1|Name=mRNA_M-pyrifera_M_contig103934.831.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig103934:84..320+ (Macrocystis pyrifera P11B4 male)
ATGGACACTGGTGCGACGAACAAGAAGGAGCTGCGGCCGTGGGACTTCAA
CACCCAGGAGGAGTGGGAGCGCTACATGAACACACGCGAGGCCACGCCAG
AGGCGGCCTTCCAGTATGGCATGAAGAAGGGCGATCGCAGGAAGCGCAAG
AAGCTCAAGAAGGCGGCCGCCAACTCGCACGACTATCACAAGGTCAGCGG
CAAGCGCTAGATGGACACTGGTGCGACGAACAAGAAGGAGCTGCGGCCGT
GGGACTTCAACACCCAGGAGGAGTGGGAGCGCTACATGAACACACGCGAG
GCCACGCCAGAGGCGGCCTTCCAGTATGGCATGAAGAAGGGCGATCGCAG
GAAGCGCAAGAAGCTCAAGAAGGCGGCCGCCAACTCGCACGACTATCACA
AGGTCAGCGGCAAGCGCTAG
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