mRNA_M-pyrifera_M_contig10390.830.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10390.830.1
Unique NamemRNA_M-pyrifera_M_contig10390.830.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10390.830.1 vs. uniprot
Match: A0A6H5JC42_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC42_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.850e-36
Identity = 68/93 (73.12%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 YTMANNARRRGRQRIPRGTLEARLQLHHPGIELGRLRLLLVDRDFTGEGEFDSALTLLRVHYQALLDLDENNDVPSTVGASEGEIRRNPSFLV 279
            Y + ++  RR RQRIPRG LEARLQLHHPGIELGRLRLLLVDRDFTGE             YQALLDLDENNDVPSTVGASEGEI+RNPSF++
Sbjct:   95 YAIRSDTARRRRQRIPRGALEARLQLHHPGIELGRLRLLLVDRDFTGED------------YQALLDLDENNDVPSTVGASEGEIKRNPSFVI 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10390.830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JC42_9PHAE1.850e-3673.12RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10390contigM-pyrifera_M_contig10390:156..3970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue5.1e-28
Seed eggNOG ortholog2880.D8LG18
KEGG koko:K19041
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-21_004940.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size285
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10390.830.1prot_M-pyrifera_M_contig10390.830.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10390 156..3964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.8296638-CDS-M-pyrifera_M_contig10390:155..2591622815544.8296638-CDS-M-pyrifera_M_contig10390:155..259Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10390 156..259 -
1692277457.098394-CDS-M-pyrifera_M_contig10390:155..2591692277457.098394-CDS-M-pyrifera_M_contig10390:155..259Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10390 156..259 -
1622815544.843533-CDS-M-pyrifera_M_contig10390:3789..39641622815544.843533-CDS-M-pyrifera_M_contig10390:3789..3964Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10390 3790..3964 -
1692277457.1148312-CDS-M-pyrifera_M_contig10390:3789..39641692277457.1148312-CDS-M-pyrifera_M_contig10390:3789..3964Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10390 3790..3964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.8553975-UTR-M-pyrifera_M_contig10390:3964..39701622815544.8553975-UTR-M-pyrifera_M_contig10390:3964..3970Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10390 3965..3970 -
1692277457.125176-UTR-M-pyrifera_M_contig10390:3964..39701692277457.125176-UTR-M-pyrifera_M_contig10390:3964..3970Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10390 3965..3970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10390.830.1

>prot_M-pyrifera_M_contig10390.830.1 ID=prot_M-pyrifera_M_contig10390.830.1|Name=mRNA_M-pyrifera_M_contig10390.830.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MANNARRRGRQRIPRGTLEARLQLHHPGIELGRLRLLLVDRDFTGEGEFD
SALTLLRVHYQALLDLDENNDVPSTVGASEGEIRRNPSFLVR*
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mRNA from alignment at M-pyrifera_M_contig10390:156..3970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10390.830.1 ID=mRNA_M-pyrifera_M_contig10390.830.1|Name=mRNA_M-pyrifera_M_contig10390.830.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3815bp|location=Sequence derived from alignment at M-pyrifera_M_contig10390:156..3970- (Macrocystis pyrifera P11B4 male)
TACACCATGGCGAACAACGCAAGGCGCCGCGGCAGGCAGCGGATCCCACG
CGGGACTCTCGAGGCGAGGTTGCAGCTGCACCACCCCGGCATCGAGCTGG
GGAGGCTCCGTCTCCTGCTGGTCGACCGCGACTTCACTGGGGAAGGCGAG
TTTGACTCTGCTTTGACGCTGCTTCGCGTCCGTCAGGCATTTTCGCCCGT
TTTTATTTATGCGCATACACGTTGTACTGTATGTGCTCGGAATGGATTCG
GGATTGGGTCGGGTTGGGTTGGGCTTGATTGGGTTTGGTTGGGGATTGGA
CTGGGTTGGGTTGGGTTGGGTTGGTAGGACAACCGGCGCTCCTTGAAACG
TTCTGCTGGTACTACGGTATACATCGTAATATTTCGTTTACGTAGTCATG
GTCGAAGCAGAAAATATTACCGCACAAGGTACGCAACACACCCGCGCACG
AGTGTCCCAAGTGCTGATTTTCTCGAAATCGAGGAGAGTGCAATTGCCGA
GCGATGCGTCTGTGTGGACATATGTCGACGACAAACATCATTCCAAATCC
ATATTTTTTGTGGTGTGTGCCCCCCTTGTGCTGCACGCAATCTCATGGGA
AATTTATTCATCCCAGGCGGTGTGTTATCTTGCGTGTTAGAGCCGCTACC
TGTTATCGAAGAGTGTTTTGTGTTCTGTCCTAAGTTCTTGATTCCCGAAT
TATTTCCTCCCTTGGTTTGTTATTTATTTTTATTTTTATTTTCGATTTTC
CTGTTATTTTGCCCCGTGAGAGGAATGCTTCGTGAGCGTTCCTGATTTTT
TGCCCTGCGGTAAAATTTTACTGACTCAGGAATTGATTAAAATATTTCCT
CTTTTTTTTGTTTCTGATTAAAAAAAAAAAAACAGAGGACAATCAGAGCC
CATCTTATCTTGGACTTTCGGTTCTTTAAATTTGACTTGATTTTATTTTA
TTTGCATCTGATTGAACGAAATTTAGTGTTCCCCGTTAAGATGGGCTCTC
ACGAAAAATATATACTGGTACCTGGTATCTTTACTCGACAGTAACGGCCG
TTATACGGTATCTCGATCTATGGATAGCGTAGCCGAAGTACGCAAAGAGG
GCGAGTATATTTTGATGGACTACCGCTGTATATACCACGAGTTGATCGAC
TGTATAAGCAGCGAGGAGTTTAGTATCTCAACCTCTCACGACTCGAAGCG
GAGACTTGAATCTACAGAGTAGTATTACGAGGGAACGTTTCACATGATAT
TAACCTTTTAGTGCTGCAGTTCCATTTTGAGGACAAACCACTCTTAATTC
TAAGTAGTCTGTCCCCACAATGGGACTACAGTACTAACAGAGTTAAAAGT
AATGTGAGAACCAAAGCCTACTACAGTAACAATCTAGTAAAAATAGGGGG
ATATATGACGCGTTCTGCGATAGAAGGTAGCACAGTTCCGCTAAAATGGT
TCCTGAAAGGCGGGGCTCCTTAACCGCTTTAGTACCGCAGTCCCGATTTG
GGGACAAACCAGTCTAATTCCAAGTGATTTGTCCCCAAAACGGGACTGCG
GTACTAAAAGGGTTAACCCAAAATCGTCAGAATGCCAATCTTGTTTCGTA
AAATGACGTAATTGCTTACTTGGGCCATGGGATTATTCATCGGGATACGA
TTTGATTTTTGCTGAAGTCAGTTTTCGGGTGAGGTGTGGAGCTCCTTAAG
GTCAAGCGAGGAGCCTGAGAAAATTTGGGGTGAACCTCTATCGTAGAACG
CGCTCTGTATGAGTATACAGCGGTAGAGGTCCCCCAGTAAGGCGGTGGTG
TTCCAGAGCAACGTATCCGCCTTGTTGGGGGAAGCCGCCTCCGTCACTCC
GGGTCAAAGATGTCAGGAGACATGTCAAGCAACGCAAAAACCTGCGGTAT
CAACGGTGTAAGGCCGAGTGTTTCGCACGAAAACCTTGCAGTTTGGTGTC
AGTCAAGGCATGTCAAGGCAGAGTTGCTGTCTGTCAAGGAGTGAAGGTGC
TGTCTCCTGACATATTTGCTCCGGGTCATTGAGTGTAATTCGACCAGATG
GGGTTAGCCCTCGCCCCAGAAACTCGCGCTGTTGGATATTCGTAGTGAGG
TCTGCCTTGCTACTGTCGTCGACCATGTGTGCGCTGGTGGAAGGAAGTTA
AAATAAAATTTATCGGAGATACAGCAGTAGCAGTCCCTCTACAAATAGTG
CCGGCTGTTGAGTAGTAATAGTGCCGGTTGCCCGCTATAGCGCCTGTGGA
ATAGCTTGGCCCAGATGAGATTCACCAGTGTGGTAGCGTGCGGAGTAATT
AGTGCCGGTTGCGGCTGTTTGTAGTGCCGGTATTGTTGGCTGGTGCACAC
TATTAATAGCACTATAGAGGGACCGGCACTACTTCTTCACCAGAAAATGT
GATGTTTCGGATGGCGCGGATCTCCTGATTCACTTTTTTTTATAGGGCCT
CCGGCTGCACCAGGAAGCTGGGCTGCACTCCCGTTTACAGTAGGGCTGCA
CTCCCGTGGTGATGACAAAACACTTGGAATTAGACTAAGATTTAGGTGCA
CGTGCACTGCGGCACTAAAAGGGCTTTTCACCCAGCATAATTAGCCCCGT
TTAGGCCTTAAGGACTGCACTCCCATCGTGGGGACGAAACACTTGGGACT
AGAGTCAAAGTTAGGTTTCTGCATAATGCAGCACTAAAAAGGGGTCAGAA
AGCCCTCCTGTTTGTTTCGGCGTGGTGACTTTTTTTTCGATCTGGCCTTG
GCAAAGTTCCCGGTGAGGGACTTAAACCCTTTCAGTACCGCAGTCCCGTT
TTGGGGACAAATCACTTGGAATTAGACTGGTATGTCCCCAAATCGGGACC
GCGGTACTAAAGGGGTTAACTCGGCCTCCTGACACTCAGCGCTGCGGGCG
GCACACCGTATCAGACTTGTATTCTGCGTGGCTCTCTCGTCGCGCGTTTT
TGGTTTCCCCCCTGTAAAAGAAACAAAGCGTTGTACTGATGTACGTATGT
GCGCATCCCGTCTAGCACGCGCGATCGAACTATCACACGCGGCTTGCAAA
GCTGAGTTTCGAGAAAACGAAGAAACGATATCACAGCTGAGGTGTGTGCT
TTTGTGTGTGTGTGTGTGTGTGTTTTTTTTTCTACATTTTCTGCACAGAA
ACGGGAAAACCCGGAAGGGTTTCGTCGAGCCACATGGTGCCGATCGGTCG
GTAGGTCGGTCTGTAGGTGGATCGGTTGGTCGATACCGATCGTTTTTGGT
TCTCGAGAGAAACGGGACACGGAACGCGGGGTGGAACCGGGAGCGGCAAG
CTGGTAGCTCGTCGCATAATCCGCTGCTGGTTTTGCGTTCACTGTGACTC
ACTGGATCCATGGTTGGAGTACAGTACAGCACTACAATGTATTAACTGTA
CTGTACTGTACCGTACCGTACCGTACCGTACCGTACCGTATCGTACAGTA
CCGTACCGTACCGTACCGTACCGGTACTGTACTGCACTGTACTGTACTGT
ACTGTACTGTACTGTACTGTACTGTACTGTACCGTACTGTACCGTACCGT
ACCGCACCGCACCGCACGGTACGGGTGCGGTGCTTTACTGTGCTGTGCTG
TCGCGACAAAACTGTGGGAAGACCAAACACACAACTCGGTTGAGTAACAC
TCAAAAGTATATGTTTTTTTCGGATGTGAATACTGTACTCGCGTGTTGTG
CTGTGCTGTAGATTACCAAGCTTTGCTGGACCTGGACGAGAACAACGACG
TGCCCTCGACGGTAGGAGCTAGCGAAGGGGAGATCAGACGGAACCCTTCT
TTCTTGGTTAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10390:156..3970-

>mRNA_M-pyrifera_M_contig10390.830.1 ID=mRNA_M-pyrifera_M_contig10390.830.1|Name=mRNA_M-pyrifera_M_contig10390.830.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig10390:156..3970- (Macrocystis pyrifera P11B4 male)
ATGGCGAACAACGCAAGGCGCCGCGGCAGGCAGCGGATCCCACGCGGGAC
TCTCGAGGCGAGGTTGCAGCTGCACCACCCCGGCATCGAGCTGGGGAGGC
TCCGTCTCCTGCTGGTCGACCGCGACTTCACTGGGGAAGGCGAGTTTGAC
TCTGCTTTGACGCTGCTTCGCGTCCATGGCGAACAACGCAAGGCGCCGCG
GCAGGCAGCGGATCCCACGCGGGACTCTCGAGGCGAGGTTGCAGCTGCAC
CACCCCGGCATCGAGCTGGGGAGGCTCCGTCTCCTGCTGGTCGACCGCGA
CTTCACTGGGGAAGGCGAGTTTGACTCTGCTTTGACGCTGCTTCGCGTCC
ATTACCAAGCTTTGCTGGACCTGGACGAGAACAACGACGTGCCCTCGACG
GTAGGAGCTAGCGAAGGGGAGATCAGACGGAACCCTTCTTTCTTGGTTAG
GTGAATTACCAAGCTTTGCTGGACCTGGACGAGAACAACGACGTGCCCTC
GACGGTAGGAGCTAGCGAAGGGGAGATCAGACGGAACCCTTCTTTCTTGG
TTAGGTGA
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