mRNA_M-pyrifera_M_contig103870.824.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Match: A0A2E5X2Y1_9BACT (Sigma-54 factor interaction domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X2Y1_9BACT) HSP 1 Score: 93.6 bits (231), Expect = 2.120e-19 Identity = 55/145 (37.93%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 1 GERRVDVPAVSTRRAELPGSFEVVLRRAARRQGCLAPT-LAECARPVVWRQPWARGLHDLAHLARRLTPLAQGAHLTGRELIGLSAELGVELLAKLPTRDFDPQDLIQALAGTRKKSGALHRGRAAALMGWDPDTLRAKLEALDL 432 G + VP +S RRAE+P E + R AR + CLAP L++ A V+WRQ W L L +L L G + RE++ +S + + +L +R +D+IQAL TR + G +++ RAA +GWDPDTL A+L L++ Sbjct: 735 GRLQFIVPPLSGRRAEIPALVEFLAARVAREE-CLAPVELSDQALAVLWRQSWTGNLRQLESAVYKLVLLHHGQSVGKREILEMSQRFALGIQQRLSSRQPKYEDVIQALDHTRTRGGRINKTRAALYLGWDPDTLVARLGDLEI 878
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Match: A0A2D6HJH3_9BACT (Sigma-54 factor interaction domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HJH3_9BACT) HSP 1 Score: 81.6 bits (200), Expect = 3.120e-15 Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 1 Query: 19 VPAVSTRRAELPGSFEVVLRRAARRQGCLAPTLAECARPVVWRQPWARGLHDLAHLARRLTPLAQGAHLTGRELIGLSAELGVELLAKLPTRDFDPQDLIQALAGTRKKSGALHRGRAAALMGWDPDTLRAKL 417 VP + RR E+PG + RR A + E A ++WRQ W L +L L +L A G + R + +A G L KLP+R DL+ AL T G ++ RAAA +GWDPDTL A++ Sbjct: 741 VPPLRLRREEIPGIVSFLSRRFAADEHASVAEFDESAMGLLWRQAWEGNLRELESLIFKLVLAADGEVVCARTVRATAARAGQTLQGKLPSRHPARADLVAALRSTLTGGGRTNKSRAAAYLGWDPDTLCARM 873
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Match: A0A523PQY6_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PQY6_9BACT) HSP 1 Score: 79.0 bits (193), Expect = 2.730e-14 Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 1 Query: 19 VPAVSTRRAELPGSFEVVLRRAARRQGCLAPTLAECARPVVWRQPWARGLHDLAHLARRLTPLAQGAHLTGRELIGLSAELGVELLAKLPTRDFDPQDLIQALAGTRKKSGALHRGRAAALMGWDPDTLRAKLEALDLH 435 VP + RR ++P + RR A + P L + A+ ++WRQ W + +L + +L G L ++ A GV L +LP+R DL+ AL TR + G ++ RAA +GWDPDTL A+++ D H Sbjct: 752 VPPLRDRRNDIPLLARFLARRIAAEEAVPVPLLTDDAQALLWRQAWPGNVRELENAVFKLVLHHAGEELDADAVVRALAPYGVLLARRLPSRHPPRADLVAALVTTRTRGGRPNKSRAAQYLGWDPDTLVARMK--DAH 888
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Match: A0A521K5Q6_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K5Q6_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 1.750e-13 Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 13 VDVPAVSTRRAELPGSFEVVLRRAARRQGCLAPTLAECARPVVWRQPWARGLHDLAHLARRLTPLAQGAHLTGRELIGLSAELGVELLAKLPTRDFDPQDLIQALAGTRKKSGALHRGRAAALMGWDPDTLRAKLEALD 429 + VP+++ RR E+P L R A + P L E ++WRQ W L +L RL L G + EL +A ++L ++ R + + + AL+ TRK++G+ ++ RAA+ +GW+ +TL A+L + Sbjct: 807 IAVPSLAQRRDEIPVLARHFLERLAAEERLDTPALGESCLALLWRQDWPGNLRELEQFLYRLALLCPGREIDAAELARAAARHRLDLSKRIAPRQAERELVAMALSCTRKQNGSFNKSRAASYLGWETETLVARLREFE 945
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Match: A0A800KK82_9BACT (Sigma-54 factor interaction domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A800KK82_9BACT) HSP 1 Score: 69.3 bits (168), Expect = 6.190e-11 Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 1 Query: 13 VDVPAVSTRRAELPGSFEVVLRRAARRQGCLAPTLAECARPVVWRQPWARGLHDLAHLARRLTPLAQGAHLTGRELIGLSAELGVELLAKLPTRDFDPQDLIQALAGTRKKSGALHRGRAAALMGWDPDTLRAKLEALDL 432 V V ++ RR ELP +LR G L + A + WRQPW G+ L +L + G + + + G+ + +LP+R +D++ AL TR +SG +++ RAA +GWDPDTL A+++ L L Sbjct: 731 VRVGGLAERRVELPFLVPSLLRILREHHGGPLLRLDDAALGLFWRQPWEGGMAALKGALLKLLLESSGEVIEFDPAHSVLSANGLGPIKRLPSRRPCRRDVVSALDSTRLESGRINKTRAAQYLGWDPDTLVARMQDLGL 870
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Match: A0A518EX78_9BACT (C4-dicarboxylate transport transcriptional regulatory protein DctD n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EX78_9BACT) HSP 1 Score: 66.2 bits (160), Expect = 7.420e-10 Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 1 Query: 1 GERRVDVPAVSTRRAELPGSFEVVLRRAARRQGCLAPTLAECARPVVWRQPWARGLHDLAHLARRLT-----PLAQ------------GAHLTG-RELIGLSAELGVELLAKLPTRDFDPQDLIQALAGTRKKSGALHRGRAAALMGWDPDTLRAKLE 420 G V ++ RR +P E +LRR R+G + + A +WRQPWA + L + L P+A+ GA G E + + G+E++ +LP+R DL+ AL TR + L++ RAA +GWDP+TL A+L+ Sbjct: 812 GRVTVRCRSLRDRRHAIPVLAEFLLRRMVDREGGPRLEVDDAAMATLWRQPWAENIAGLEAVLSGLFLRFGHPVAESWGADPGCGEAGGAVAVGVEETLAAILDAGLEIVPRLPSRAPRESDLLAALWVTRTATQRLNKTRAAMYLGWDPNTLAARLK 969
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Match: A0A518CWW6_9BACT (AAA domain-containing protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CWW6_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 4.230e-6 Identity = 36/112 (32.14%), Postives = 54/112 (48.21%), Query Frame = 1 Query: 109 PTLAECARPVVWRQPWAR----GLHDLAHLARRLTPLAQGAHLTGRELIGLSAELGVELLAKLPTRDFDPQDLIQALAGTRKKSGALHRGRAAALMGWDPDTLRAKLEALDL 432 P L + A +WR W+ GL DL LA L + + L ++A L + L ++L +R L A+ T +G ++ RAA +GWD DT+RA+L DL Sbjct: 1110 PELDDSALAALWRGTWSASFGGGLADLDRLAHALVRERRRGRVGATALESVAARLSIALPSRLASRRPPAALLSDAVRTTAMTNGRTNQRRAALYLGWDRDTVRARLREADL 1221 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103870.824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig103870.824.1 >prot_M-pyrifera_M_contig103870.824.1 ID=prot_M-pyrifera_M_contig103870.824.1|Name=mRNA_M-pyrifera_M_contig103870.824.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp GERRVDVPAVSTRRAELPGSFEVVLRRAARRQGCLAPTLAECARPVVWRQback to top mRNA from alignment at M-pyrifera_M_contig103870:2..439+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig103870.824.1 ID=mRNA_M-pyrifera_M_contig103870.824.1|Name=mRNA_M-pyrifera_M_contig103870.824.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig103870:2..439+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig103870:2..439+ >mRNA_M-pyrifera_M_contig103870.824.1 ID=mRNA_M-pyrifera_M_contig103870.824.1|Name=mRNA_M-pyrifera_M_contig103870.824.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig103870:2..439+ (Macrocystis pyrifera P11B4 male)back to top |