mRNA_M-pyrifera_M_contig103863.822.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103863.822.1
Unique NamemRNA_M-pyrifera_M_contig103863.822.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103863.822.1 vs. uniprot
Match: A0A5A8EBY8_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EBY8_CAFRO)

HSP 1 Score: 125 bits (315), Expect = 3.480e-32
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1 
Query:    1 CGPEFDLFVSPISNKTYKNPNLPNGFKPSAPLSALSALNVSFSVGLPMAERTERCGRGSECGPGGEIDYGYVVLGLI---IDNEVAKETVFYQAVLYDSRQDTPQCGVQECIPRPQQWYFSQQPFGVNDAIGTFNLPCLHP 414
            CG E DLF++P+       P    G + S PL+++S L V+ +  L  A  + RCG   +CGPGG++DYGY VLG++   +D     +T+FYQ +L D+RQ +P  G Q C  RP  WYF Q P+G +D I  F  PCL P
Sbjct:  132 CGTEDDLFLAPVGGNY---PGAQQGMRRSPPLASMSQLRVTMTASLDTAAASVRCGADPQCGPGGKVDYGYAVLGIVCSALDAPGGGQTLFYQVLLADTRQHSPCAGGQACSKRPLAWYFKQNPYGASDTIANFGAPCLEP 269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103863.822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8EBY8_CAFRO3.480e-3242.55Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103863contigM-pyrifera_M_contig103863:20..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.519089-CDS-M-pyrifera_M_contig103863:19..4661622815544.519089-CDS-M-pyrifera_M_contig103863:19..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103863 20..466 -
1692277456.9961321-CDS-M-pyrifera_M_contig103863:19..4661692277456.9961321-CDS-M-pyrifera_M_contig103863:19..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103863 20..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103863.822.1prot_M-pyrifera_M_contig103863.822.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103863 20..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103863.822.1

>prot_M-pyrifera_M_contig103863.822.1 ID=prot_M-pyrifera_M_contig103863.822.1|Name=mRNA_M-pyrifera_M_contig103863.822.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
CGPEFDLFVSPISNKTYKNPNLPNGFKPSAPLSALSALNVSFSVGLPMAE
RTERCGRGSECGPGGEIDYGYVVLGLIIDNEVAKETVFYQAVLYDSRQDT
PQCGVQECIPRPQQWYFSQQPFGVNDAIGTFNLPCLHPTPPSNHSSPTL
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mRNA from alignment at M-pyrifera_M_contig103863:20..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103863.822.1 ID=mRNA_M-pyrifera_M_contig103863.822.1|Name=mRNA_M-pyrifera_M_contig103863.822.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig103863:20..466- (Macrocystis pyrifera P11B4 male)
TGTGGACCTGAATTCGACCTTTTCGTGTCCCCGATTTCCAACAAAACGTA
CAAAAACCCAAACCTCCCAAACGGGTTCAAACCCTCCGCCCCTCTCTCTG
CCCTCTCTGCACTCAACGTCAGTTTTTCCGTGGGTCTTCCCATGGCAGAA
CGCACAGAGCGCTGTGGGAGGGGATCGGAGTGTGGACCAGGGGGCGAAAT
CGACTATGGGTATGTGGTGCTGGGACTGATCATTGACAATGAGGTGGCCA
AAGAGACTGTTTTTTACCAGGCAGTGCTCTACGACTCGAGACAAGACACG
CCGCAGTGTGGAGTGCAAGAGTGCATCCCTAGACCCCAGCAATGGTACTT
TTCACAACAGCCCTTTGGAGTCAATGACGCAATCGGCACCTTCAACCTCC
CGTGCCTCCACCCAACCCCACCCTCCAACCACTCCTCCCCCACGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103863:20..466-

>mRNA_M-pyrifera_M_contig103863.822.1 ID=mRNA_M-pyrifera_M_contig103863.822.1|Name=mRNA_M-pyrifera_M_contig103863.822.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig103863:20..466- (Macrocystis pyrifera P11B4 male)
TGTGGACCTGAATTCGACCTTTTCGTGTCCCCGATTTCCAACAAAACGTA
CAAAAACCCAAACCTCCCAAACGGGTTCAAACCCTCCGCCCCTCTCTCTG
CCCTCTCTGCACTCAACGTCAGTTTTTCCGTGGGTCTTCCCATGGCAGAA
CGCACAGAGCGCTGTGGGAGGGGATCGGAGTGTGGACCAGGGGGCGAAAT
CGACTATGGGTATGTGGTGCTGGGACTGATCATTGACAATGAGGTGGCCA
AAGAGACTGTTTTTTACCAGGCAGTGCTCTACGACTCGAGACAAGACACG
CCGCAGTGTGGAGTGCAAGAGTGCATCCCTAGACCCCAGCAATGGTACTT
TTCACAACAGCCCTTTGGAGTCAATGACGCAATCGGCACCTTCAACCTCC
CGTGCCTCCACCCAACCCCACCCTCCAACCACTCCTCCCCCACGCTCTGT
GGACCTGAATTCGACCTTTTCGTGTCCCCGATTTCCAACAAAACGTACAA
AAACCCAAACCTCCCAAACGGGTTCAAACCCTCCGCCCCTCTCTCTGCCC
TCTCTGCACTCAACGTCAGTTTTTCCGTGGGTCTTCCCATGGCAGAACGC
ACAGAGCGCTGTGGGAGGGGATCGGAGTGTGGACCAGGGGGCGAAATCGA
CTATGGGTATGTGGTGCTGGGACTGATCATTGACAATGAGGTGGCCAAAG
AGACTGTTTTTTACCAGGCAGTGCTCTACGACTCGAGACAAGACACGCCG
CAGTGTGGAGTGCAAGAGTGCATCCCTAGACCCCAGCAATGGTACTTTTC
ACAACAGCCCTTTGGAGTCAATGACGCAATCGGCACCTTCAACCTCCCGT
GCCTCCACCCAACCCCACCCTCCAACCACTCCTCCCCCACGCTC
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