mRNA_M-pyrifera_M_contig103745.800.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103745.800.1
Unique NamemRNA_M-pyrifera_M_contig103745.800.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: D2VHD5_NAEGR (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VHD5_NAEGR)

HSP 1 Score: 68.9 bits (167), Expect = 4.780e-11
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   22 TLRGHESTVWSV-AANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISID----TERPMF----------ATASGDMTVRLWVYDGGVQNPARAVRCRFIHRGHSAGVAAVQ 330
            TLRGH  ++ S+     R ++SGSADCS R+W     K L+ L GH G VR+++ D    TE   +           + SGD T+RLW     V NP    +C  I +GH  GV  V+
Sbjct:  419 TLRGHTKSITSLHMIGSRFVISGSADCSVRVWDLQSKKCLQTLFGHSGWVRSVTSDFVDVTEGEEYERLIDDLKFVVSGSGDGTIRLW----DVSNPDLEEKCLRILKGHEGGVTCVK 532          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: UPI001CFD2363 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD2363)

HSP 1 Score: 68.2 bits (165), Expect = 9.000e-11
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 1
Query:   22 TLRGHESTVWSV-AANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISIDT---------------ERPMFATASGDMTVRLWVYDGGVQNPARAVRCRFIHRGHSAGVAAVQVFDAN--VVSGDVAGTIIVW 384
            TLRGH  ++ ++     R ++SGSADC+ R+W       ++ L GH G VR+++ D                +     + SGD T+RLW     V NP    +C  + +GH  GV  V+  D N  +VS  V  T+ VW
Sbjct:  516 TLRGHTKSITAIHLIGSRFVISGSADCTVRVWDLHSKSLIQTLTGHTGWVRSVTSDISDFNAETDEYERLIDDLKFVVSGSGDGTIRLW----DVSNPDIEEKCIKVLKGHEGGVTCVKS-DTNGVIVSSSVDKTVKVW 649          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A6A5BUZ3_NAEFO (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BUZ3_NAEFO)

HSP 1 Score: 68.2 bits (165), Expect = 9.100e-11
Identity = 45/138 (32.61%), Postives = 67/138 (48.55%), Query Frame = 1
Query:   22 TLRGHESTVWSV-AANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISID--------------TERPMFATASGDMTVRLWVYDGGVQNPARAVRCRFIHRGHSAGVAAVQVFDAN--VVSGDVAGTIIVW 384
            TLRGH  ++ ++     R ++SGSADC+ R+W       ++ L GH G VR+++ D               +     + SGD T+RLW     V NP    +C  + +GH  GV  V+  D N  +VS  V  T+ VW
Sbjct:  627 TLRGHTKSITAIHLIGSRFVISGSADCTVRVWDLHSRSLIQTLTGHTGWVRSVTSDFSDVSESDEYERLIDDLKFVVSGSGDGTIRLW----DVSNPDVEEKCVKVLKGHEGGVTCVKS-DINGVIVSSSVDKTVKVW 759          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A7S4Q9I9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q9I9_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 4.550e-9
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   13 CVMTLRGHESTVWSVA--ANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISIDTERP--MFATASGDMTVRLW 240
            C +TL GHE  V+SVA   +  +IVS SAD +AR+W  ADG  L  L+GH   VR     ++R   M  T S D T  LW
Sbjct:   67 CGLTLAGHEEPVFSVAFSRDGSLIVSASADRTARVWSCADGACLAVLKGHKAEVRKACFGSKRTAGMVVTGSSDGTAALW 146          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A1B6L0B0_9HEMI (PFU domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6L0B0_9HEMI)

HSP 1 Score: 61.2 bits (147), Expect = 2.150e-8
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   13 CVMTLRGHESTVWSVA--ANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISIDTERPMFATASGDMTVRLWVYDGG 255
            CV+TL GHE TVWSV   AN  I V+GSAD + R++ + DG +LR L GH   VR+++  +   + + A+ D T+R W  D G
Sbjct:  139 CVLTLTGHELTVWSVLQMANGTI-VTGSADKTIRVY-SPDGTYLRTLTGHKDCVRSLAAQSAVELLSCAN-DATIRKWNVDTG 218          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A1B6IU08_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6IU08_9HEMI)

HSP 1 Score: 59.3 bits (142), Expect = 7.040e-8
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    4 EAGCVMTLRGHESTVWSVA--ANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISIDTERPMFATASGDMTVRLWVYDGG 255
            E  CV+TL GHE T+W V   AN  I V+GSAD + R++ + DG +LR L GH   VR ++ ++   + + A+ D T+R W  D G
Sbjct:  136 EQECVLTLTGHELTIWRVLQMANGTI-VTGSADKTIRVY-SPDGTYLRTLTGHKDCVRDLAAESAVELLSCAN-DATIRKWNVDTG 218          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A1B6GB58_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6GB58_9HEMI)

HSP 1 Score: 59.3 bits (142), Expect = 1.090e-7
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    4 EAGCVMTLRGHESTVWSVA--ANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISIDTERPMFATASGDMTVRLWVYDGG 255
            E  CV+TL GHE T+W V   AN  I V+GSAD + R++ + DG +LR L GH   VR ++ ++   + + A+ D T+R W  D G
Sbjct:    1 EQECVLTLTGHELTIWRVLQMANGTI-VTGSADKTIRVY-SPDGTYLRTLTGHKDCVRDLAAESAVELLSCAN-DATIRKWNVDTG 83          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A1R2AN05_9CILI (Ion_trans domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AN05_9CILI)

HSP 1 Score: 59.3 bits (142), Expect = 1.150e-7
Identity = 29/107 (27.10%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   67 DRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISIDTERPMFATASGDMTVRLWVYDGGVQNPARAVRCRFIHRGHSAGVAAVQVFDANVVSGDVAGTIIVWS 387
            D+  +  S +    +W    GK + A+ GHD V+  + ID  + +  T S D ++++W  D       R+     I   H AG+  +++++ N++SGD+ G I++W+
Sbjct:  149 DKKFIIASKNTLLELWHEKKGK-IYAVGGHDDVITCMRIDESKKIIYTGSSDYSIKVWDIDEDTIEETRS-----IDEAHKAGIVVLELYNENLISGDLDGEILIWN 249          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A367K246_RHIST (Elongator complex protein 2 n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367K246_RHIST)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-7
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   64 NDRIIVSGSADCSARIWRA-ADGKFLRA--LRGHDGVV------RAISIDTERPMFATASGDMTVRLW 240
            ND  +VSGSADC+A+IW+  A GK++ +  L GH G +      RA SIDTE+ +  T S D T+R+W
Sbjct:   75 NDIALVSGSADCTAKIWKTDATGKWINSATLEGHTGSIETIACMRAQSIDTEQDLIVTGSSDGTIRIW 142          
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Match: A0A0F4YMF1_TALEM (Uncharacterized protein n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YMF1_TALEM)

HSP 1 Score: 58.5 bits (140), Expect = 1.930e-7
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   16 VMTLRGHESTVWSVAANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVVRAISIDTER 195
            +  L GHE TV ++AA+D  +VSGS DC+ R+WR + G+ +  L+GH   + ++ +D ER
Sbjct:  262 IHVLSGHEKTVRAIAAHDDTVVSGSYDCTVRVWRISTGESVHKLQGHTKNIYSVVLDHER 321          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103745.800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2VHD5_NAEGR4.780e-1137.29Guanine nucleotide-binding protein subunit beta-li... [more]
UPI001CFD23639.000e-1132.37uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BUZ3_NAEFO9.100e-1132.61Guanine nucleotide-binding protein subunit beta-li... [more]
A0A7S4Q9I9_9DINO4.550e-945.00Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A1B6L0B0_9HEMI2.150e-844.58PFU domain-containing protein (Fragment) n=1 Tax=G... [more]
A0A1B6IU08_9HEMI7.040e-841.86Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
A0A1B6GB58_9HEMI1.090e-741.86Uncharacterized protein (Fragment) n=2 Tax=Proconi... [more]
A0A1R2AN05_9CILI1.150e-727.10Ion_trans domain-containing protein n=1 Tax=Stento... [more]
A0A367K246_RHIST1.510e-747.06Elongator complex protein 2 n=1 Tax=Rhizopus stolo... [more]
A0A0F4YMF1_TALEM1.930e-741.67Uncharacterized protein n=1 Tax=Rasamsonia emerson... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103745contigM-pyrifera_M_contig103745:260..646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue4.8e-10
Seed eggNOG ortholog5762.XP_002676526.1
KEGG koko:K03361,ko:K10260,ko:K10266
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00387,M00407
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0003779,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006935,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008092,GO:0008144,GO:0008150,GO:0008152,GO:0009605,GO:0009987,GO:0015629,GO:0016043,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016905,GO:0017022,GO:0017076,GO:0017111,GO:0018107,GO:0018193,GO:0018210,GO:0019538,GO:0022402,GO:0022411,GO:0022607,GO:0030029,GO:0030036,GO:0030554,GO:0030863,GO:0030864,GO:0031033,GO:0031035,GO:0031037,GO:0031038,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0035639,GO:0036094,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0045159,GO:0046777,GO:0050896,GO:0051015,GO:0051017,GO:0051259,GO:0051260,GO:0051301,GO:0051764,GO:0061572,GO:0061640,GO:0065003,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0097367,GO:0097435,GO:0099568,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1903047
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Exons1
Model size387
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.5938976-UTR-M-pyrifera_M_contig103745:259..2771622815543.5938976-UTR-M-pyrifera_M_contig103745:259..277Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103745 260..277 +
1692277456.6950562-UTR-M-pyrifera_M_contig103745:259..2771692277456.6950562-UTR-M-pyrifera_M_contig103745:259..277Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103745 260..277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.6048722-CDS-M-pyrifera_M_contig103745:277..6461622815543.6048722-CDS-M-pyrifera_M_contig103745:277..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103745 278..646 +
1692277456.712913-CDS-M-pyrifera_M_contig103745:277..6461692277456.712913-CDS-M-pyrifera_M_contig103745:277..646Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103745 278..646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103745.800.1prot_M-pyrifera_M_contig103745.800.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103745 278..646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103745.800.1

>prot_M-pyrifera_M_contig103745.800.1 ID=prot_M-pyrifera_M_contig103745.800.1|Name=mRNA_M-pyrifera_M_contig103745.800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
MTLRGHESTVWSVAANDRIIVSGSADCSARIWRAADGKFLRALRGHDGVV
RAISIDTERPMFATASGDMTVRLWVYDGGVQNPARAVRCRFIHRGHSAGV
AAVQVFDANVVSGDVAGTIIVWS
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mRNA from alignment at M-pyrifera_M_contig103745:260..646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103745.800.1 ID=mRNA_M-pyrifera_M_contig103745.800.1|Name=mRNA_M-pyrifera_M_contig103745.800.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig103745:260..646+ (Macrocystis pyrifera P11B4 male)
CGAGAAGCCGGCTGTGTGATGACGCTGCGAGGGCACGAGTCCACGGTGTG GAGCGTGGCGGCGAACGACCGCATCATCGTGTCTGGGAGCGCAGATTGCT CGGCGCGCATTTGGCGGGCAGCCGATGGTAAATTTCTCCGCGCGCTCCGT GGCCATGACGGCGTGGTTCGGGCGATTTCCATCGATACAGAACGGCCCAT GTTTGCGACGGCCTCGGGCGACATGACGGTGCGGCTGTGGGTGTACGATG GAGGGGTGCAAAACCCAGCGCGCGCAGTGCGGTGCCGTTTCATCCACCGG GGCCACTCTGCAGGCGTCGCGGCGGTGCAAGTGTTTGACGCCAACGTCGT TTCCGGCGATGTGGCAGGCACCATCATCGTGTGGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103745:260..646+

>mRNA_M-pyrifera_M_contig103745.800.1 ID=mRNA_M-pyrifera_M_contig103745.800.1|Name=mRNA_M-pyrifera_M_contig103745.800.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig103745:260..646+ (Macrocystis pyrifera P11B4 male)
ATGACGCTGCGAGGGCACGAGTCCACGGTGTGGAGCGTGGCGGCGAACGA
CCGCATCATCGTGTCTGGGAGCGCAGATTGCTCGGCGCGCATTTGGCGGG
CAGCCGATGGTAAATTTCTCCGCGCGCTCCGTGGCCATGACGGCGTGGTT
CGGGCGATTTCCATCGATACAGAACGGCCCATGTTTGCGACGGCCTCGGG
CGACATGACGGTGCGGCTGTGGGTGTACGATGGAGGGGTGCAAAACCCAG
CGCGCGCAGTGCGGTGCCGTTTCATCCACCGGGGCCACTCTGCAGGCGTC
GCGGCGGTGCAAGTGTTTGACGCCAACGTCGTTTCCGGCGATGTGGCAGG
CACCATCATCGTGTGGTCCATGACGCTGCGAGGGCACGAGTCCACGGTGT
GGAGCGTGGCGGCGAACGACCGCATCATCGTGTCTGGGAGCGCAGATTGC
TCGGCGCGCATTTGGCGGGCAGCCGATGGTAAATTTCTCCGCGCGCTCCG
TGGCCATGACGGCGTGGTTCGGGCGATTTCCATCGATACAGAACGGCCCA
TGTTTGCGACGGCCTCGGGCGACATGACGGTGCGGCTGTGGGTGTACGAT
GGAGGGGTGCAAAACCCAGCGCGCGCAGTGCGGTGCCGTTTCATCCACCG
GGGCCACTCTGCAGGCGTCGCGGCGGTGCAAGTGTTTGACGCCAACGTCG
TTTCCGGCGATGTGGCAGGCACCATCATCGTGTGGTCC
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