mRNA_M-pyrifera_M_contig103714.789.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103714.789.1
Unique NamemRNA_M-pyrifera_M_contig103714.789.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: A0A0L0DVE0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVE0_THETB)

HSP 1 Score: 86.7 bits (213), Expect = 2.340e-17
Identity = 49/121 (40.50%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEFSADAQVILTYNGKSR 363
            RS V EI+   +LIF +TR GVC  F   T+  V  LN+   E +RSLFYN  ++S++T S YR D + SL  R+T +  I   +      LFE+E L    FVEF      +LTY+  S+
Sbjct:   73 RSRVAEIIAAGELIFALTRHGVCAAFNRDTMTRVCYLNITPAEVVRSLFYNKVNKSIITVSVYRTDNFSSLRCRTTPLEHIARGQPDAGFALFESESLRWPGFVEFDDVNAKVLTYSAASK 193          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: A0A4S8JA86_MUSBA (Uncharacterized protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JA86_MUSBA)

HSP 1 Score: 84.7 bits (208), Expect = 1.120e-16
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEFSADAQVILTYN 351
            RS + EIV+V D+IF V +SG+C  F   T + +  LN+  DE+IRS+FYN  DES++T S Y  D + SL  R+T I  I+  +      LFE E L    FVEF      IL Y+
Sbjct:   41 RSKIIEIVSVKDVIFAVAQSGLCAAFSRTTNKRICFLNISPDETIRSIFYNKNDESLITVSVYASDHFSSLKCRTTPIEYIRRNQLDAGCPLFETESLKWPGFVEFIDMNCKILIYS 157          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: A0A8J5X2U8_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X2U8_DIALT)

HSP 1 Score: 84.7 bits (208), Expect = 1.280e-16
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEFSADAQVILTY 348
            RS + EIV   DL+F +T SGVC VF+  T   +  +N   DE +RSLFYN  +ES+++ S +R D + SL  R+T +  I+ RE +R   LFE E L    FVEF      ++T+
Sbjct:   76 RSKIVEIVGAKDLLFGLTLSGVCAVFDRATRRRLCFVNTSPDEVVRSLFYNEANESLISVSVFRADNFSSLKCRTTPLDCIRAREPARGVSLFENECLKWPGFVEFDDVNGKVITH 191          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: A0A7S3EKM2_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EKM2_9RHOD)

HSP 1 Score: 84.0 bits (206), Expect = 2.380e-16
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEFSADAQVILTYNGK 357
            RS V EIV  +DLIF +T++GVC  F+   L+ +  LN   DE IRSL+ N  + S++T S +R D + SL  RST +  ++++E +    LFE+E L    FVEF      +LT++ +
Sbjct:  117 RSKVTEIVASSDLIFTLTKTGVCIAFDRDKLKRICFLNATDDEVIRSLYLNKVNNSIITVSVFREDNFSSLRCRSTHLQYVRKKETNAGFALFESESLRWPGFVEFDDLNSKVLTFSSE 235          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: UPI0019D5B322 (uncharacterized protein LOC120666243 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5B322)

HSP 1 Score: 83.6 bits (205), Expect = 2.700e-16
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEFSADAQVILTY 348
            RS V EIV   D++F ++RSG+C  F+  T + +A LNL  DE IRS+FYN  ++S++T S Y  D Y SL  R+T +  ++  E      +FE+E L    FVEF +    +L Y
Sbjct:   27 RSKVIEIVGAKDIVFALSRSGLCAAFDRVTNKRIAFLNLSPDEVIRSMFYNKYNDSLITISIYPSDNYGSLNCRTTPLEYVRRNELDAGFPIFESESLKWPGFVEFDSVNGKVLIY 142          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: UPI0019D6AA77 (uncharacterized protein LOC120701526 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6AA77)

HSP 1 Score: 82.4 bits (202), Expect = 7.220e-16
Identity = 48/126 (38.10%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEFSADAQVILTYNGKSRYVSAF 378
            RS + EIV   D+IF ++RSG+C  F+  T + VA LN   DE IRS+ YN  ++S++T S Y  D YRSL  R+T +  ++  E      +FE+E L    FVEF +     L Y  +      F
Sbjct:   35 RSRIIEIVAAKDIIFALSRSGLCAAFDRVTNKRVAFLNSSPDEVIRSMLYNKYNDSLITVSLYSSDSYRSLNCRATPLECVRRNELDAGFPIFESESLKWPGFVEFDSVNGKALIYAAQEGIYKVF 160          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: A0A161Y9J3_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y9J3_DAUCS)

HSP 1 Score: 67.0 bits (162), Expect = 9.160e-11
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEFSADAQVILTYNGKSR 363
            RS V EI++   ++F    SGVC  F  GT + +  LN+   E I+ +FYN CD+S++T S    D + S   RST I  I+  + +    LFE+  L +  FV+F       +T++ + R
Sbjct:    4 RSKVVEILSARGVVFARVESGVCVAFSRGTNQRLCFLNVS-GEIIQDIFYNKCDDSIITVSISESDNFSSFKCRSTGIEYIRRAQPNAGFTLFESLSLKRPGFVDFDDLDSNAVTFSVEER 123          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: UPI0007EFF03D (uncharacterized protein LOC108221574 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFF03D)

HSP 1 Score: 66.6 bits (161), Expect = 2.830e-10
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQESFVEF 318
            RS V EI++   ++F    SGVC  F  GT + +  LN+   E I+ +FYN CD+S++T S    D + S   RST I  I+  + +    LFE+  L +  FV+F
Sbjct:   58 RSKVVEILSARGVVFARVESGVCVAFSRGTNQRLCFLNVS-GEIIQDIFYNKCDDSIITVSISESDNFSSFKCRSTGIEYIRRAQPNAGFTLFESLSLKRPGFVDF 162          
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Match: A0A5P1EJZ4_ASPOF (Uncharacterized protein n=4 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EJZ4_ASPOF)

HSP 1 Score: 51.2 bits (121), Expect = 7.070e-5
Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFYNPCDESMLT 177
            RS + EIV V D+IFV++ SG    F   T E +  LN   D+ I+ +FYN C+ES++T
Sbjct:  115 RSKIAEIVAVKDIIFVLSESGRGAAFSLQTKEHLCFLNTSPDQVIKGIFYNKCNESLIT 173          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103714.789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0L0DVE0_THETB2.340e-1740.50Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A4S8JA86_MUSBA1.120e-1642.74Uncharacterized protein n=1 Tax=Musa balbisiana Ta... [more]
A0A8J5X2U8_DIALT1.280e-1641.38Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S3EKM2_9RHOD2.380e-1639.50Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
UPI0019D5B3222.700e-1640.52uncharacterized protein LOC120666243 n=1 Tax=Panic... [more]
UPI0019D6AA777.220e-1638.10uncharacterized protein LOC120701526 n=1 Tax=Panic... [more]
A0A161Y9J3_DAUCS9.160e-1133.88Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
UPI0007EFF03D2.830e-1036.79uncharacterized protein LOC108221574 n=1 Tax=Daucu... [more]
A0A5P1EJZ4_ASPOF7.070e-544.07Uncharacterized protein n=4 Tax=Asparagus officina... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103714contigM-pyrifera_M_contig103714:170..650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.4
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog3885.XP_007136389.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transducin WD40 repeat-like superfamily protein
EggNOG OGs2CKYV@1,2QS54@2759,37QD9@33090,3GG4G@35493,4JMQ7@91835
COG Functional cat.S
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons3
Model size387
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103714.789.1prot_M-pyrifera_M_contig103714.789.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103714 170..650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.0822527-CDS-M-pyrifera_M_contig103714:169..3201622815543.0822527-CDS-M-pyrifera_M_contig103714:169..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103714 170..320 -
1692277456.5134423-CDS-M-pyrifera_M_contig103714:169..3201692277456.5134423-CDS-M-pyrifera_M_contig103714:169..320Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103714 170..320 -
1622815543.0987754-CDS-M-pyrifera_M_contig103714:370..5211622815543.0987754-CDS-M-pyrifera_M_contig103714:370..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103714 371..521 -
1692277456.5240843-CDS-M-pyrifera_M_contig103714:370..5211692277456.5240843-CDS-M-pyrifera_M_contig103714:370..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103714 371..521 -
1622815543.1132042-CDS-M-pyrifera_M_contig103714:565..6501622815543.1132042-CDS-M-pyrifera_M_contig103714:565..650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103714 566..650 -
1692277456.5360398-CDS-M-pyrifera_M_contig103714:565..6501692277456.5360398-CDS-M-pyrifera_M_contig103714:565..650Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103714 566..650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103714.789.1

>prot_M-pyrifera_M_contig103714.789.1 ID=prot_M-pyrifera_M_contig103714.789.1|Name=mRNA_M-pyrifera_M_contig103714.789.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
RSAVQEIVTVNDLIFVVTRSGVCTVFEEGTLETVAQLNLQRDESIRSLFY
NPCDESMLTASTYRGDGYRSLVLRSTKIADIKEREHSRYQYLFEAEHLGQ
ESFVEFSADAQVILTYNGKSRYVSAFCS*
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mRNA from alignment at M-pyrifera_M_contig103714:170..650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103714.789.1 ID=mRNA_M-pyrifera_M_contig103714.789.1|Name=mRNA_M-pyrifera_M_contig103714.789.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=481bp|location=Sequence derived from alignment at M-pyrifera_M_contig103714:170..650- (Macrocystis pyrifera P11B4 male)
CGTAGCGCAGTGCAAGAGATCGTCACCGTGAACGACCTCATCTTCGTAGT CACGAGGAGCGGTGTATGCACGGTTTTCGAGGAAGGTAATGATGCTTCCA CACCTGTTTTCGTGTCTGACGCGCTGCAGGCACACTTGAAACCGTAGCCC AGCTCAACCTTCAGCGCGACGAGTCAATCCGATCTCTCTTCTACAACCCA TGTGATGAGAGCATGCTGACAGCGTCAACCTACCGAGGTGATGGATACCG ATCTCTTGTTCTGCGGTCGACGAAGATTGCGTAACACGCACCTCCATCAT CAGTCAGAACTCTGAGCTGACATCAGTAAGCGACATCAAGGAGAGGGAAC ATTCACGGTACCAATATCTCTTCGAAGCAGAGCATCTTGGCCAAGAGAGC TTCGTTGAGTTCTCTGCTGACGCACAGGTGATCCTCACCTACAATGGCAA GTCGCGGTACGTGAGCGCATTCTGCAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103714:170..650-

>mRNA_M-pyrifera_M_contig103714.789.1 ID=mRNA_M-pyrifera_M_contig103714.789.1|Name=mRNA_M-pyrifera_M_contig103714.789.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig103714:170..650- (Macrocystis pyrifera P11B4 male)
CGTAGCGCAGTGCAAGAGATCGTCACCGTGAACGACCTCATCTTCGTAGT
CACGAGGAGCGGTGTATGCACGGTTTTCGAGGAAGCGTAGCGCAGTGCAA
GAGATCGTCACCGTGAACGACCTCATCTTCGTAGTCACGAGGAGCGGTGT
ATGCACGGTTTTCGAGGAAGGCACACTTGAAACCGTAGCCCAGCTCAACC
TTCAGCGCGACGAGTCAATCCGATCTCTCTTCTACAACCCATGTGATGAG
AGCATGCTGACAGCGTCAACCTACCGAGGTGATGGATACCGATCTCTTGT
TCTGCGGTCGACGAAGATTGCGCACACTTGAAACCGTAGCCCAGCTCAAC
CTTCAGCGCGACGAGTCAATCCGATCTCTCTTCTACAACCCATGTGATGA
GAGCATGCTGACAGCGTCAACCTACCGAGGTGATGGATACCGATCTCTTG
TTCTGCGGTCGACGAAGATTGCCGACATCAAGGAGAGGGAACATTCACGG
TACCAATATCTCTTCGAAGCAGAGCATCTTGGCCAAGAGAGCTTCGTTGA
GTTCTCTGCTGACGCACAGGTGATCCTCACCTACAATGGCAAGTCGCGGT
ACGTGAGCGCATTCTGCAGCTGACGACATCAAGGAGAGGGAACATTCACG
GTACCAATATCTCTTCGAAGCAGAGCATCTTGGCCAAGAGAGCTTCGTTG
AGTTCTCTGCTGACGCACAGGTGATCCTCACCTACAATGGCAAGTCGCGG
TACGTGAGCGCATTCTGCAGCTGA
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