mRNA_M-pyrifera_M_contig103606.766.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103606.766.1
Unique NamemRNA_M-pyrifera_M_contig103606.766.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A6A3LKV6_9STRA (Ferric oxidoreductase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LKV6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.150e-12
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  172 MFVPILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            + V  +L V   SVLL +T  SYER +F+HK +    +VL  LH L  VL Y  KG   G         + TG VAF  M+ + +L+L +VRR+F+ELF+++H+VLF+++   +++H
Sbjct:  124 LLVVFILTVRNNSVLLALTGISYERVLFYHKVAALVTIVLSGLHGLAYVLAYN-KGEISG-----EGSMVFTGTVAFAAMVLMFVLSLGFVRRKFFELFLRTHWVLFVVVLVFAVMH 234          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A6A4F3J4_9STRA (FAD-binding FR-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F3J4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.410e-12
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  172 MFVPILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            + V  +L V   SVLL +T  SYER +F+HK +    +VL  LH L  VL Y  KG   G         + TG VAF  M+ + +L+L +VRR+F+ELF+++H+VLF+++   +++H
Sbjct:  146 LLVVFILTVRNNSVLLALTGISYERVLFYHKVAALVTIVLSGLHGLAYVLAYN-KGEISG-----EGSMVFTGTVAFAAMVLMFVLSLGFVRRKFFELFLRTHWVLFVVVLVFAVMH 256          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A6A3REL8_9STRA (FAD-binding FR-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3REL8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.130e-11
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  196 VTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            V   S+L+     S+ERA+F+HK     M++L  +H L  +L  T     +          I+TG  AF+ M+ + LL+L W+RRRF+E+F++ H++LFM+I   ++LH
Sbjct:  144 VRNNSLLVAFAGISFERALFYHKLFAFVMIILAFMHALSYILTRTDASAQYNP-------QIVTGMTAFIAMVVLYLLSLGWIRRRFHEVFVRVHWILFMMILVTAVLH 245          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A6G0L4D6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0L4D6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.250e-11
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  196 VTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            V   S+L+     S+ERA+F+HK     M++L  +H L  +L  T     +          I+TG  AF+ M+ + LL+L W+RRRF+E+F++ H++LFM+I   ++LH
Sbjct:  625 VRNNSLLVAFAGISFERALFYHKLFAFVMIILAFMHALSYILTRTDASAQYNP-------QIVTGMTAFIAMVVLYLLSLGWIRRRFHEVFVRVHWILFMMILVTAVLH 726          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: G5A8R4_PHYSP (FAD-binding FR-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A8R4_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 2.850e-11
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  196 VTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            V   S+L+     S+ERA+F+HK     MV+L  +H L  +L  T     H          ++TG +AF+ M  + L +L W+RRRF+ELF++ H++LF++I   ++LH
Sbjct:  141 VRNNSLLVTFAGISFERALFYHKLFAFVMVILAAMHALGYILTRTDATAEHN-------HKVVTGMIAFIAMAVLYLFSLGWIRRRFHELFVRMHWLLFIVILITAVLH 242          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: H3GF52_PHYRM (FAD-binding FR-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GF52_PHYRM)

HSP 1 Score: 70.9 bits (172), Expect = 3.840e-11
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  172 MFVPILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            + V  +L V   SVLL +T  SYERA+F+HK +    +VL  LH L  +L    KG   G      +  + TG VAF  M+ + +L+L +VRRRF+ELF+++H+VLF+++   +++H
Sbjct:  144 LLVVFVLAVRNNSVLLALTGISYERALFYHKVAVLVTIVLSALHGLAYLLARN-KGEFSG-----HEDMVFTGTVAFGAMVLMLVLSLGFVRRRFFELFLRAHWVLFIVVLVFAVMH 254          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A3R7HRR5_9STRA (FAD-binding FR-type domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HRR5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.230e-11
Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 1
Query:  172 MFVPILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            + V  +L V   SVLL +T  SYERA+F+HK +    ++L  LH L  +L Y  KG   G         + +G VAF  M+ + +L+L +VRRRF+E F+++H++LF+++   +++H
Sbjct:  154 LLVVFVLAVRNNSVLLALTGISYERALFYHKVAALVTIILSGLHGLAYILAYD-KGEISG-----EGDMVFSGTVAFGAMVLMFVLSLGFVRRRFFEFFLRTHWILFIVVMVFAVMH 264          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A0P1AH13_PLAHL (FAD-binding FR-type domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AH13_PLAHL)

HSP 1 Score: 70.5 bits (171), Expect = 5.230e-11
Identity = 40/117 (34.19%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  172 MFVPILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            + +  LL V   S LL +T  SYERA+F+HK S    ++L  LH L  +L +  +  A  +        ++TG +AF  M+ +  L+L +VRR F++ F++SHY+LF+++   +++H
Sbjct:  130 LLIVFLLTVRNNSPLLLLTGISYERALFYHKLSALTTIILSGLHGLSYILAHNKREIADQVNM------VITGTIAFAAMMLMFGLSLNYVRRHFFDFFLRSHYILFIVVAVFAVIH 240          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A8K1CEA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEA9_PYTOL)

HSP 1 Score: 70.5 bits (171), Expect = 5.240e-11
Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = 1
Query:   22 PLGLHWRASELLIAAAIAGMNFLVFFLRWDPGSKDSL--KSAAKAVGVVMQAMFVPILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLV---------YTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            PL       EL +   +  + F+V FL W   +  ++  K  +    ++M   FV   L V   SVLL +T  S+ERA+F+HK  G   VVLG +H L  +L            ++GG  G     T     +G + F LM A+ +L+   +RRR++ELF++ H++LF+ I  L+L+H
Sbjct:   81 PLAWLTVTLELKVGDLLVTVPFVVGFLVWSALNCRNIDVKGTSSQPTLMMLVTFV---LAVRNNSVLLHLTGLSFERALFYHKLFGFISVVLGGIHGLSYLLQDAGYIPSRRLRSEGGGVGE----TLSTEASGAILFYLMCALIVLSFYKIRRRWFELFVRFHWILFLAIIPLALIH 251          
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Match: A0A7S4G168_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G168_9EUGL)

HSP 1 Score: 70.1 bits (170), Expect = 6.730e-11
Identity = 44/113 (38.94%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  184 ILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLLHTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRRRFYELFMKSHYVLFMLITGLSLLH 522
            +LLPVTR SV   +  C +ERA+ FH+W  R ++VL  +H LLM LV   +     +         L G +A+VLM+ ++ LA   VR  F+E+FM SH++L+  +  L++LH
Sbjct:  246 VLLPVTRNSVWNKLLGCPFERAIKFHRWVARVLLVLTTVHGLLM-LVRQGRVVLTSVSSNSIGQGYLYGFIAWVLMIVLATLAYEPVRAMFFEVFMVSHWLLYPAVVVLAMLH 357          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103606.766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3LKV6_9STRA1.150e-1239.32Ferric oxidoreductase domain-containing protein n=... [more]
A0A6A4F3J4_9STRA2.410e-1239.32FAD-binding FR-type domain-containing protein n=4 ... [more]
A0A6A3REL8_9STRA1.130e-1135.78FAD-binding FR-type domain-containing protein n=3 ... [more]
A0A6G0L4D6_9STRA1.250e-1135.78Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
G5A8R4_PHYSP2.850e-1135.78FAD-binding FR-type domain-containing protein n=1 ... [more]
H3GF52_PHYRM3.840e-1139.32FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A3R7HRR5_9STRA5.230e-1136.75FAD-binding FR-type domain-containing protein n=4 ... [more]
A0A0P1AH13_PLAHL5.230e-1134.19FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A8K1CEA9_PYTOL5.240e-1132.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4G168_9EUGL6.730e-1138.94Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103606contigM-pyrifera_M_contig103606:112..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog42099.EPrPV00000019660
KEGG koko:K13411
KEGG TC5.B.1.2
KEGG Pathwayko04013,ko04624,map04013,map04624
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ferric reductase. Source PGD
EggNOG OGs1MEP6@121069,KOG0039@1,KOG0039@2759
EC1.6.3.1
COG Functional cat.PQ
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815542.0026684-CDS-M-pyrifera_M_contig103606:111..6331622815542.0026684-CDS-M-pyrifera_M_contig103606:111..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103606 112..633 +
1692277456.1200395-CDS-M-pyrifera_M_contig103606:111..6331692277456.1200395-CDS-M-pyrifera_M_contig103606:111..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103606 112..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103606.766.1prot_M-pyrifera_M_contig103606.766.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103606 112..633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103606.766.1

>prot_M-pyrifera_M_contig103606.766.1 ID=prot_M-pyrifera_M_contig103606.766.1|Name=mRNA_M-pyrifera_M_contig103606.766.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
LGCFPLAPLGLHWRASELLIAAAIAGMNFLVFFLRWDPGSKDSLKSAAKA
VGVVMQAMFVPILLPVTRRSVLLWVTHCSYERAVFFHKWSGRWMVVLGLL
HTLLMVLVYTAKGGAHGLFKEFTKFNILTGEVAFVLMLAISLLALPWVRR
RFYELFMKSHYVLFMLITGLSLLH
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mRNA from alignment at M-pyrifera_M_contig103606:112..633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103606.766.1 ID=mRNA_M-pyrifera_M_contig103606.766.1|Name=mRNA_M-pyrifera_M_contig103606.766.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig103606:112..633+ (Macrocystis pyrifera P11B4 male)
CTGGGGTGCTTTCCCCTGGCGCCGCTGGGGCTGCACTGGCGCGCCTCGGA GCTGCTGATCGCGGCGGCGATCGCTGGCATGAACTTCCTGGTGTTCTTCT TGCGCTGGGACCCGGGCAGCAAGGACTCGCTCAAGTCTGCGGCCAAGGCG GTGGGCGTGGTGATGCAGGCAATGTTCGTGCCCATCCTGCTGCCCGTCAC GCGCAGGAGCGTGCTGCTGTGGGTCACGCACTGCAGCTACGAGCGGGCGG TCTTCTTCCACAAGTGGAGCGGCCGCTGGATGGTGGTGCTGGGCCTGCTC CACACCCTGCTCATGGTGCTCGTCTACACCGCCAAGGGCGGCGCCCACGG CCTCTTCAAGGAGTTCACCAAGTTCAACATCCTCACCGGCGAGGTTGCCT TCGTCCTCATGCTCGCCATTTCCCTCCTGGCCCTGCCCTGGGTGCGGCGG CGCTTCTACGAGCTCTTCATGAAGTCGCACTACGTCCTCTTCATGCTCAT CACTGGCCTCTCTCTCCTCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103606:112..633+

>mRNA_M-pyrifera_M_contig103606.766.1 ID=mRNA_M-pyrifera_M_contig103606.766.1|Name=mRNA_M-pyrifera_M_contig103606.766.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig103606:112..633+ (Macrocystis pyrifera P11B4 male)
CTGGGGTGCTTTCCCCTGGCGCCGCTGGGGCTGCACTGGCGCGCCTCGGA
GCTGCTGATCGCGGCGGCGATCGCTGGCATGAACTTCCTGGTGTTCTTCT
TGCGCTGGGACCCGGGCAGCAAGGACTCGCTCAAGTCTGCGGCCAAGGCG
GTGGGCGTGGTGATGCAGGCAATGTTCGTGCCCATCCTGCTGCCCGTCAC
GCGCAGGAGCGTGCTGCTGTGGGTCACGCACTGCAGCTACGAGCGGGCGG
TCTTCTTCCACAAGTGGAGCGGCCGCTGGATGGTGGTGCTGGGCCTGCTC
CACACCCTGCTCATGGTGCTCGTCTACACCGCCAAGGGCGGCGCCCACGG
CCTCTTCAAGGAGTTCACCAAGTTCAACATCCTCACCGGCGAGGTTGCCT
TCGTCCTCATGCTCGCCATTTCCCTCCTGGCCCTGCCCTGGGTGCGGCGG
CGCTTCTACGAGCTCTTCATGAAGTCGCACTACGTCCTCTTCATGCTCAT
CACTGGCCTCTCTCTCCTCCACCTGGGGTGCTTTCCCCTGGCGCCGCTGG
GGCTGCACTGGCGCGCCTCGGAGCTGCTGATCGCGGCGGCGATCGCTGGC
ATGAACTTCCTGGTGTTCTTCTTGCGCTGGGACCCGGGCAGCAAGGACTC
GCTCAAGTCTGCGGCCAAGGCGGTGGGCGTGGTGATGCAGGCAATGTTCG
TGCCCATCCTGCTGCCCGTCACGCGCAGGAGCGTGCTGCTGTGGGTCACG
CACTGCAGCTACGAGCGGGCGGTCTTCTTCCACAAGTGGAGCGGCCGCTG
GATGGTGGTGCTGGGCCTGCTCCACACCCTGCTCATGGTGCTCGTCTACA
CCGCCAAGGGCGGCGCCCACGGCCTCTTCAAGGAGTTCACCAAGTTCAAC
ATCCTCACCGGCGAGGTTGCCTTCGTCCTCATGCTCGCCATTTCCCTCCT
GGCCCTGCCCTGGGTGCGGCGGCGCTTCTACGAGCTCTTCATGAAGTCGC
ACTACGTCCTCTTCATGCTCATCACTGGCCTCTCTCTCCTCCAC
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