mRNA_M-pyrifera_M_contig103503.745.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103503.745.1
Unique NamemRNA_M-pyrifera_M_contig103503.745.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103503.745.1 vs. uniprot
Match: A0A2E0SZI2_9ACTN (CHK domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0SZI2_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 5.890e-6
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 1 
Query:   22 VATVTPKLIGEGQGFMSNVYRLSFTTQGGRALSVVAKISNAVGAAMPA-----MYKAEADYYRSAASLGRKLARMPASYGCQISASNTEFVLLLEDLCSPYAAGDQVQSASLEDAQAAMDSLAAFHAQWW 396
            +  V  + IGEG G  S VYR   T +GG   SVV K+      A+       MY  E  ++ + A  G+   R+P  Y   +    ++FV ++ED+ S     DQ +  +++DAQ A+D LAA+HA +W
Sbjct:   26 ITGVNHEQIGEGVGVSSAVYRS--TLEGGDLDSVVVKLPALAEEAVFTSTVLRMYIREVRFFENLA--GQSPIRVPVGYHGAVDLETSQFVQVMEDMGSMRMV-DQNEGMNIDDAQRAVDELAAWHATFW 150
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BLAST of mRNA_M-pyrifera_M_contig103503.745.1 vs. uniprot
Match: A0A382QL52_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382QL52_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 1.010e-5
Identity = 40/132 (30.30%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:   22 VATVTPKLIGEGQGFMSNV--YRLSFTTQGGRALSVVAKI-----SNAVGAAMPAMYKAEADYYRSAASLGRKLARMPASYGCQISASNTEFVLLLEDLCSPYAAGDQVQSASLEDAQAAMDSLAAFHAQWW 396
            V  +  K IGEG G    +    L+++ +G    S+V K+      N V A    +Y+ E ++++  A       R+P  Y   +   +  F++L+E+L   Y  GDQV  A+ +  +AA+ +LA FHA WW
Sbjct:   30 VTGIDVKDIGEGTGIFGEIALLTLTYSDEGIYPDSLVVKMPCVEPENLVVAQALGIYQREVNFFKQVAPSTNL--RIPDCYYTHMG-EDGRFIILMENLSLEYTVGDQVIGATNDQVEAAIKTLAGFHAYWW 158
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BLAST of mRNA_M-pyrifera_M_contig103503.745.1 vs. uniprot
Match: UPI0012FADE32 (aminoglycoside phosphotransferase family protein n=1 Tax=Microtetraspora malaysiensis TaxID=161358 RepID=UPI0012FADE32)

HSP 1 Score: 52.0 bits (123), Expect = 3.890e-5
Identity = 47/137 (34.31%), Postives = 65/137 (47.45%), Query Frame = 1 
Query:    7 LGDDTVATVTPKLIGEGQGFMSNVYRL--SFTTQGGRALSVVAKISNAVGAAMPAM-----YKAEADYYRSAASLGRKLARMPASYGCQISASNTEFVLLLEDLCSPYAAGDQVQSASLEDAQAAMDSLAAFHAQWW 396
            LG   V  VT   +G GQ  M++ YRL   ++  G    +V+AK++ A  A+  A      Y+ EA +YR  A       R P  Y  +    +  F LLLED    + A DQV     E+A+ A+D LAA H   W
Sbjct:   56 LGGARVTGVTTAAVGTGQ--MADTYRLHLDYSPAGAGPATVIAKLAAASPASRTAAKVTRAYEVEARFYRHLAPT--LPVRSPRCYLSRYDEPSGAFTLLLEDAVDGHVA-DQVTGCGPEEAERAVDQLAALHGPMW 187
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103503.745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E0SZI2_9ACTN5.890e-633.85CHK domain-containing protein n=6 Tax=Acidimicrobi... [more]
A0A382QL52_9ZZZZ1.010e-530.30Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
UPI0012FADE323.890e-534.31aminoglycoside phosphotransferase family protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103503contigM-pyrifera_M_contig103503:236..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.6
Seed ortholog evalue8e-11
Seed eggNOG ortholog1313172.YM304_37140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1679)
EggNOG OGs2H4PV@201174,COG2334@1,COG2334@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.6265533-CDS-M-pyrifera_M_contig103503:235..6311622815540.6265533-CDS-M-pyrifera_M_contig103503:235..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103503 236..631 -
1692277455.5086582-CDS-M-pyrifera_M_contig103503:235..6311692277455.5086582-CDS-M-pyrifera_M_contig103503:235..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103503 236..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103503.745.1prot_M-pyrifera_M_contig103503.745.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103503 236..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103503.745.1

>prot_M-pyrifera_M_contig103503.745.1 ID=prot_M-pyrifera_M_contig103503.745.1|Name=mRNA_M-pyrifera_M_contig103503.745.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
DLLGDDTVATVTPKLIGEGQGFMSNVYRLSFTTQGGRALSVVAKISNAVG
AAMPAMYKAEADYYRSAASLGRKLARMPASYGCQISASNTEFVLLLEDLC
SPYAAGDQVQSASLEDAQAAMDSLAAFHAQWW
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mRNA from alignment at M-pyrifera_M_contig103503:236..631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103503.745.1 ID=mRNA_M-pyrifera_M_contig103503.745.1|Name=mRNA_M-pyrifera_M_contig103503.745.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig103503:236..631- (Macrocystis pyrifera P11B4 male)
GATCTCCTCGGCGACGACACAGTGGCCACAGTCACACCAAAGCTCATTGG
CGAGGGCCAGGGCTTCATGAGCAACGTCTACCGCCTCTCCTTCACGACAC
AGGGAGGCAGAGCCCTCTCGGTGGTGGCGAAGATTTCCAATGCAGTGGGC
GCCGCGATGCCCGCGATGTACAAGGCAGAGGCAGACTACTACCGCAGCGC
CGCCAGCCTCGGCCGCAAGCTGGCGCGCATGCCTGCCAGCTACGGCTGCC
AGATCTCTGCCTCCAACACAGAGTTTGTGCTGCTGCTCGAGGACCTCTGC
AGCCCTTACGCGGCGGGCGACCAAGTGCAGAGCGCGAGTCTGGAGGACGC
CCAGGCCGCCATGGACTCTCTTGCTGCCTTTCACGCACAGTGGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103503:236..631-

>mRNA_M-pyrifera_M_contig103503.745.1 ID=mRNA_M-pyrifera_M_contig103503.745.1|Name=mRNA_M-pyrifera_M_contig103503.745.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig103503:236..631- (Macrocystis pyrifera P11B4 male)
GATCTCCTCGGCGACGACACAGTGGCCACAGTCACACCAAAGCTCATTGG
CGAGGGCCAGGGCTTCATGAGCAACGTCTACCGCCTCTCCTTCACGACAC
AGGGAGGCAGAGCCCTCTCGGTGGTGGCGAAGATTTCCAATGCAGTGGGC
GCCGCGATGCCCGCGATGTACAAGGCAGAGGCAGACTACTACCGCAGCGC
CGCCAGCCTCGGCCGCAAGCTGGCGCGCATGCCTGCCAGCTACGGCTGCC
AGATCTCTGCCTCCAACACAGAGTTTGTGCTGCTGCTCGAGGACCTCTGC
AGCCCTTACGCGGCGGGCGACCAAGTGCAGAGCGCGAGTCTGGAGGACGC
CCAGGCCGCCATGGACTCTCTTGCTGCCTTTCACGCACAGTGGTGGGATC
TCCTCGGCGACGACACAGTGGCCACAGTCACACCAAAGCTCATTGGCGAG
GGCCAGGGCTTCATGAGCAACGTCTACCGCCTCTCCTTCACGACACAGGG
AGGCAGAGCCCTCTCGGTGGTGGCGAAGATTTCCAATGCAGTGGGCGCCG
CGATGCCCGCGATGTACAAGGCAGAGGCAGACTACTACCGCAGCGCCGCC
AGCCTCGGCCGCAAGCTGGCGCGCATGCCTGCCAGCTACGGCTGCCAGAT
CTCTGCCTCCAACACAGAGTTTGTGCTGCTGCTCGAGGACCTCTGCAGCC
CTTACGCGGCGGGCGACCAAGTGCAGAGCGCGAGTCTGGAGGACGCCCAG
GCCGCCATGGACTCTCTTGCTGCCTTTCACGCACAGTGGTGG
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