mRNA_M-pyrifera_M_contig103494.742.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103494.742.1
Unique NamemRNA_M-pyrifera_M_contig103494.742.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: R7QCM0_CHOCR (40S ribosomal protein S17 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCM0_CHOCR)

HSP 1 Score: 176 bits (447), Expect = 6.360e-55
Identity = 89/116 (76.72%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGV 348
            GRVRTKTVK +ARQI+E YYS+LTLDF  NKR+ DEVAV+PSKR+RNK+AGFVTHLM RIQ+GPVR ISLKLQEEERERR+DFVPE SA+D D IE+D+ET+DMLK L+LA LPG+
Sbjct:    2 GRVRTKTVKKSARQIIEKYYSRLTLDFQTNKRICDEVAVIPSKRLRNKVAGFVTHLMTRIQKGPVRGISLKLQEEERERRMDFVPEVSAIDTDVIEVDSETRDMLKELDLAKLPGL 117
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: K8EZ50_9CHLO (40S ribosomal protein S17 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EZ50_9CHLO)

HSP 1 Score: 175 bits (444), Expect = 1.600e-54
Identity = 86/116 (74.14%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGV 348
            GRVRTKTVK  +RQI+E YYS+LTLDF  NKR+ DE+A++PSKR+RNKIAGF THLMKRIQRGPVR ISLKLQEEERERR+DF+P+ SAL  D+IE+D +T DMLKS+N+ NLPGV
Sbjct:    2 GRVRTKTVKKASRQIIEKYYSRLTLDFATNKRIADEIAIIPSKRLRNKIAGFTTHLMKRIQRGPVRGISLKLQEEERERRMDFIPDESALQTDSIEVDRDTMDMLKSMNMGNLPGV 117
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A4RWR0_OSTLU (Ribosomal protein S17, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Ostreococcus TaxID=70447 RepID=A4RWR0_OSTLU)

HSP 1 Score: 174 bits (441), Expect = 5.210e-54
Identity = 86/116 (74.14%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGV 348
            GRVRTKTVK  +RQI+E YYS+LTLDF  NKR+ D++A++PSKR+RNKIAGF THLMKRIQRGPVR ISLKLQEEERERR+DFVPE+SAL+ D+IE+D +T DMLKS+N+ NL GV
Sbjct:    2 GRVRTKTVKKASRQIIEKYYSRLTLDFATNKRIADDIAIIPSKRLRNKIAGFTTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEKSALETDSIEVDRDTMDMLKSMNMGNLQGV 117
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A0A5J4XWF6_9CHLO (Ribosomal component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XWF6_9CHLO)

HSP 1 Score: 172 bits (437), Expect = 3.310e-53
Identity = 87/117 (74.36%), Postives = 103/117 (88.03%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGVR 351
            GRVRTKTVK  +R I+E YY++LTLDFH NKRV +EVAV+ SKR+RNKIAGF THLMKRIQRGPVR ISLKLQEEERERR+DFVPE SA++ +TIEID +T D+L+SLN+ NLPGV+
Sbjct:    2 GRVRTKTVKKASRVIIEKYYNRLTLDFHTNKRVAEEVAVIQSKRLRNKIAGFTTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEESAVNTETIEIDQDTNDLLRSLNMVNLPGVK 118
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A0A7S0PL29_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0PL29_MICPS)

HSP 1 Score: 172 bits (436), Expect = 5.330e-53
Identity = 88/116 (75.86%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGV 348
            GRVRTKTVK  +R IVE YYS+LTLDF  NKR+ ++VA++PSKR+RNKIAGF THLMKRIQRGPVR ISLKLQEEERERR+DFVP+ SAL  +TIE+D +T DMLKSLN+ANLPGV
Sbjct:   15 GRVRTKTVKKASRVIVEKYYSRLTLDFDTNKRIAEDVAIIPSKRLRNKIAGFTTHLMKRIQRGPVRGISLKLQEEERERRMDFVPDESALAVETIEVDRDTMDMLKSLNMANLPGV 130
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A0A7S1G9V8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G9V8_9STRA)

HSP 1 Score: 172 bits (437), Expect = 5.480e-53
Identity = 90/120 (75.00%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGVREFS 360
            GRVRTKTVK +AR I+E YYS+LTLDF +NKRVVDEVAVVPSKRMRNKIAG+VTHLMKRIQRGPVR ISLKLQE ERERR+DFVPE SA+D ++I+ID  TK+ML  L+L++LPG+ + S
Sbjct:   15 GRVRTKTVKRSARHIIEKYYSRLTLDFAVNKRVVDEVAVVPSKRMRNKIAGYVTHLMKRIQRGPVRGISLKLQEAERERRMDFVPEVSAIDVESIDIDPTTKEMLAKLDLSHLPGLNDVS 134
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A9NK75_PICSI (Uncharacterized protein n=8 Tax=Pinidae TaxID=3313 RepID=A9NK75_PICSI)

HSP 1 Score: 171 bits (434), Expect = 8.880e-53
Identity = 85/116 (73.28%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGV 348
            GRVRTKTVK ++RQI+E YYS++TLDFH NK++V+EVA++PSKR+RNKIAGF THLMKRIQRGPVR ISLKLQEEERERR+DFVPE SA+  + IE+D ET DML SL +++LPGV
Sbjct:    2 GRVRTKTVKKSSRQIIERYYSRMTLDFHTNKKIVEEVAIIPSKRLRNKIAGFSTHLMKRIQRGPVRGISLKLQEEERERRMDFVPEESAIKTEVIEVDKETMDMLASLGMSDLPGV 117
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A0A7S4SMK2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SMK2_9DINO)

HSP 1 Score: 171 bits (432), Expect = 1.080e-52
Identity = 87/115 (75.65%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:    7 VRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGVR 351
            VRTKTVK +AR I+E YYS+LTLDFH NKRV DEVA++PSKRMRNKIAGF+THLMKRIQRGPVR ISLKLQEEERERR+DFVPE SALD++ IE+D +TK ML +L+  +LPGV+
Sbjct:   13 VRTKTVKKSARTIIEKYYSRLTLDFHTNKRVCDEVAIIPSKRMRNKIAGFITHLMKRIQRGPVRGISLKLQEEERERRMDFVPEVSALDQEVIEVDPQTKAMLDALDFKDLPGVQ 127
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BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A0A2P2K1T2_RHIMU (40S ribosomal protein S17 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K1T2_RHIMU)

HSP 1 Score: 171 bits (433), Expect = 1.180e-52
Identity = 84/118 (71.19%), Postives = 103/118 (87.29%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGVRE 354
            GRVRTKTVK ++RQ++E YYS++TLDFH NK+V+ EVA++PSKR+RNKIAGF THLMKRIQ+GPVR ISLKLQEEERERR+DFVPE+SA+  D I +D ET DML +L +ANLPGV +
Sbjct:    2 GRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVIAEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEKSAIQTDEINVDKETIDMLSALGMANLPGVNQ 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Match: A0A830HMC1_9CHLO (40S ribosomal protein S17 n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HMC1_9CHLO)

HSP 1 Score: 170 bits (431), Expect = 1.850e-52
Identity = 88/116 (75.86%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIAGFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAETKDMLKSLNLANLPGV 348
            GRVRTKTVK  +RQIVENYYS+LTLDF  NKR+VDE+AV+ SKR+RNKI+GF THLMKRIQRGPVR ISLKLQEEERERRLDF+P+ SA+  D IE+D +T DMLKSL +A LPGV
Sbjct:    2 GRVRTKTVKKASRQIVENYYSRLTLDFATNKRLVDEIAVIQSKRLRNKISGFTTHLMKRIQRGPVRGISLKLQEEERERRLDFIPDESAVATDHIEVDRDTMDMLKSLGMAQLPGV 117
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103494.742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QCM0_CHOCR6.360e-5576.7240S ribosomal protein S17 n=1 Tax=Chondrus crispus... [more]
K8EZ50_9CHLO1.600e-5474.1440S ribosomal protein S17 n=1 Tax=Bathycoccus pras... [more]
A4RWR0_OSTLU5.210e-5474.14Ribosomal protein S17, component of cytosolic 80S ... [more]
A0A5J4XWF6_9CHLO3.310e-5374.36Ribosomal component of cytosolic 80S ribosome and ... [more]
A0A7S0PL29_MICPS5.330e-5375.86Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A7S1G9V8_9STRA5.480e-5375.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A9NK75_PICSI8.880e-5373.28Uncharacterized protein n=8 Tax=Pinidae TaxID=3313... [more]
A0A7S4SMK2_9DINO1.080e-5275.65Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A2P2K1T2_RHIMU1.180e-5271.1940S ribosomal protein S17 n=2 Tax=Rhizophora mucro... [more]
A0A830HMC1_9CHLO1.850e-5275.8640S ribosomal protein S17 n=2 Tax=Pycnococcus prov... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103494contigM-pyrifera_M_contig103494:71..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score182.2
Seed ortholog evalue1.4e-43
Seed eggNOG ortholog70448.Q01A77
Preferred nameRPS17
KEGG koko:K02962
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.Ribosomal protein S17
EggNOG OGs34HSI@3041,37UJA@33090,COG1383@1,KOG0187@2759
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons3
Model size362
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103494.742.1prot_M-pyrifera_M_contig103494.742.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103494 72..584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815540.4872603-CDS-M-pyrifera_M_contig103494:71..2691622815540.4872603-CDS-M-pyrifera_M_contig103494:71..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103494 72..269 -
1692277455.4504457-CDS-M-pyrifera_M_contig103494:71..2691692277455.4504457-CDS-M-pyrifera_M_contig103494:71..269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103494 72..269 -
1622815540.500955-CDS-M-pyrifera_M_contig103494:339..4051622815540.500955-CDS-M-pyrifera_M_contig103494:339..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103494 340..405 -
1692277455.4617584-CDS-M-pyrifera_M_contig103494:339..4051692277455.4617584-CDS-M-pyrifera_M_contig103494:339..405Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103494 340..405 -
1622815540.5112772-CDS-M-pyrifera_M_contig103494:488..5841622815540.5112772-CDS-M-pyrifera_M_contig103494:488..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103494 489..584 -
1692277455.471131-CDS-M-pyrifera_M_contig103494:488..5841692277455.471131-CDS-M-pyrifera_M_contig103494:488..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103494 489..584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103494.742.1

>prot_M-pyrifera_M_contig103494.742.1 ID=prot_M-pyrifera_M_contig103494.742.1|Name=mRNA_M-pyrifera_M_contig103494.742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
GRVRTKTVKGTARQIVENYYSQLTLDFHINKRVVDEVAVVPSKRMRNKIA
GFVTHLMKRIQRGPVRNISLKLQEEERERRLDFVPERSALDRDTIEIDAE
TKDMLKSLNLANLPGVREFS
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mRNA from alignment at M-pyrifera_M_contig103494:71..584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103494.742.1 ID=mRNA_M-pyrifera_M_contig103494.742.1|Name=mRNA_M-pyrifera_M_contig103494.742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=514bp|location=Sequence derived from alignment at M-pyrifera_M_contig103494:71..584- (Macrocystis pyrifera P11B4 male)
GGCCGCGTCCGCACCAAGACCGTCAAGGGCACTGCCCGCCAGATCGTGGA
GAACTACTACTCCCAGCTCACCCTCGACTTCCACATCAACAAGCGCGTAC
GTGACCGTGCAGCAGACGCGCCGCCCTTGTTGAGCCTCCACCCTCACATC
GCCCTCTACTTCTTTCCCTCCGCGCTCAGGTCGTCGATGAGGTTGCCGTC
GTGCCGTCCAAGCGCATGCGCAACAAGATCGCCGGCTTCGTGACGGTGCG
CATCCTCGTCTGCGCCCTCTGTCTGCTCGCTCAAGCTGACTCGTTCGTTC
TCTGCTCGCTCGCAGCACCTGATGAAGCGCATCCAGCGCGGCCCGGTGCG
CAACATCTCCCTGAAGCTGCAGGAGGAGGAGCGTGAGCGCCGCCTGGACT
TTGTGCCGGAGCGCTCCGCCCTGGACCGCGACACCATCGAGATCGACGCG
GAGACGAAGGACATGCTCAAGTCCCTCAACCTGGCCAACCTCCCGGGCGT
CCGCGAGTTCTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103494:71..584-

>mRNA_M-pyrifera_M_contig103494.742.1 ID=mRNA_M-pyrifera_M_contig103494.742.1|Name=mRNA_M-pyrifera_M_contig103494.742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig103494:71..584- (Macrocystis pyrifera P11B4 male)
GGCCGCGTCCGCACCAAGACCGTCAAGGGCACTGCCCGCCAGATCGTGGA
GAACTACTACTCCCAGCTCACCCTCGACTTCCACATCAACAAGCGCGGCC
GCGTCCGCACCAAGACCGTCAAGGGCACTGCCCGCCAGATCGTGGAGAAC
TACTACTCCCAGCTCACCCTCGACTTCCACATCAACAAGCGCGTCGTCGA
TGAGGTTGCCGTCGTGCCGTCCAAGCGCATGCGCAACAAGATCGCCGGCT
TCGTGACGGTCGTCGATGAGGTTGCCGTCGTGCCGTCCAAGCGCATGCGC
AACAAGATCGCCGGCTTCGTGACGCACCTGATGAAGCGCATCCAGCGCGG
CCCGGTGCGCAACATCTCCCTGAAGCTGCAGGAGGAGGAGCGTGAGCGCC
GCCTGGACTTTGTGCCGGAGCGCTCCGCCCTGGACCGCGACACCATCGAG
ATCGACGCGGAGACGAAGGACATGCTCAAGTCCCTCAACCTGGCCAACCT
CCCGGGCGTCCGCGAGTTCTCTCACCTGATGAAGCGCATCCAGCGCGGCC
CGGTGCGCAACATCTCCCTGAAGCTGCAGGAGGAGGAGCGTGAGCGCCGC
CTGGACTTTGTGCCGGAGCGCTCCGCCCTGGACCGCGACACCATCGAGAT
CGACGCGGAGACGAAGGACATGCTCAAGTCCCTCAACCTGGCCAACCTCC
CGGGCGTCCGCGAGTTCTCT
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