mRNA_M-pyrifera_M_contig103399.718.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103399.718.1
Unique NamemRNA_M-pyrifera_M_contig103399.718.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A517PNR8_9PLAN (Protein-glutamate O-methyltransferase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517PNR8_9PLAN)

HSP 1 Score: 89.0 bits (219), Expect = 2.220e-19
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   25 YQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIGP 156
            YQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIGP
Sbjct:  731 YQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIGP 774
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A355GLW9_9PLAN (Protein-glutamate O-methyltransferase n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GLW9_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 8.300e-17
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   25 YQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            YQNKINDLTDMTSD+DSLMESTDVAT+FLD+ LCIRKFTPQIG
Sbjct:  734 YQNKINDLTDMTSDMDSLMESTDVATIFLDQELCIRKFTPQIG 776
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A7W1AJV8_9DELT (Histidine kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1AJV8_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 9.630e-13
Identity = 32/51 (62.75%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 ELYTVNAEYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            ELYTVNAEYQ+KI +LT++T+D+D+L+ ST++ T+FLD  L IRKFTPQ+ 
Sbjct:    3 ELYTVNAEYQSKIAELTELTNDMDNLLASTEIGTIFLDNELRIRKFTPQVA 53
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A517U2I7_9BACT (Protein-glutamate O-methyltransferase n=2 Tax=Lacipirellula limnantheis TaxID=2528024 RepID=A0A517U2I7_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 1.610e-11
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   22 EYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            EYQ KI +LT+MT D+D+L+ ST++ T+FLD NLCIRKFTPQIG
Sbjct:  794 EYQKKIVELTEMTDDMDNLLRSTEIGTIFLDRNLCIRKFTPQIG 837
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A7Y2F9Z6_9BACT (Protein-glutamate O-methyltransferase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F9Z6_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 3.660e-10
Identity = 28/44 (63.64%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   22 EYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            E+QNKI++LT++T D+D+L+ STD+ T+FLD NLCIRKFTP+I 
Sbjct:  711 EHQNKISELTELTRDMDNLLLSTDIHTIFLDRNLCIRKFTPKIA 754
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A7W0T9I0_9DELT (PAS domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W0T9I0_9DELT)

HSP 1 Score: 62.8 bits (151), Expect = 3.660e-10
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   22 EYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            EYQ+KI  LT++T+D+D+L+ STDV T+FLDENL IRKFTPQ+ 
Sbjct:  713 EYQSKITQLTELTNDMDNLLASTDVGTIFLDENLRIRKFTPQVA 756
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A2E0X4V8_9PLAN (Chemotaxis protein CheR n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0X4V8_9PLAN)

HSP 1 Score: 62.4 bits (150), Expect = 5.000e-10
Identity = 28/44 (63.64%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   22 EYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            E+Q KI++LT++T+D+DSL+EST V T+FLD  LCIRKFTPQ+ 
Sbjct:  719 EHQKKIDELTELTADMDSLLESTQVHTIFLDNKLCIRKFTPQVA 762
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A2S8GGS6_9BACT (Protein-glutamate O-methyltransferase n=2 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GGS6_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-9
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   25 YQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            YQ KI +LT+MT+DLDSL+ ST++  +FLD +LCIRKFTP+IG
Sbjct:  740 YQKKIVELTEMTADLDSLLHSTELGVIFLDSDLCIRKFTPRIG 782
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: UPI0019BE4550 (PAS domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=UPI0019BE4550)

HSP 1 Score: 60.8 bits (146), Expect = 1.750e-9
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   22 EYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQIG 153
            EYQ KI +LT++T+D+D+L+ +TDV TVFLD  L IRKFTPQIG
Sbjct:  713 EYQRKIEELTELTNDMDNLLAATDVGTVFLDSRLHIRKFTPQIG 756
[Close]
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Match: A0A7Y5U9P5_9DELT (Protein-glutamate O-methyltransferase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7Y5U9P5_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 1.750e-9
Identity = 28/43 (65.12%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   22 EYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQI 150
            EYQ KI  LT++T+D+D+L++STDV TVFLD +LCIRKFTP++
Sbjct:  700 EYQKKIGQLTELTNDMDNLLQSTDVGTVFLDLSLCIRKFTPRM 742
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103399.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PNR8_9PLAN2.220e-19100.00Protein-glutamate O-methyltransferase n=8 Tax=Gime... [more]
A0A355GLW9_9PLAN8.300e-1790.70Protein-glutamate O-methyltransferase n=2 Tax=Plan... [more]
A0A7W1AJV8_9DELT9.630e-1362.75Histidine kinase n=1 Tax=Deltaproteobacteria bacte... [more]
A0A517U2I7_9BACT1.610e-1168.18Protein-glutamate O-methyltransferase n=2 Tax=Laci... [more]
A0A7Y2F9Z6_9BACT3.660e-1063.64Protein-glutamate O-methyltransferase n=1 Tax=Pire... [more]
A0A7W0T9I0_9DELT3.660e-1065.91PAS domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A2E0X4V8_9PLAN5.000e-1063.64Chemotaxis protein CheR n=1 Tax=Planctomycetaceae ... [more]
A0A2S8GGS6_9BACT1.280e-965.12Protein-glutamate O-methyltransferase n=2 Tax=Blas... [more]
UPI0019BE45501.750e-965.91PAS domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A7Y5U9P5_9DELT1.750e-965.12Protein-glutamate O-methyltransferase n=1 Tax=Poly... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103399contigM-pyrifera_M_contig103399:496..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog573370.DMR_11050
Preferred namecheB
KEGG koko:K03412,ko:K03413,ko:K13924
KEGG Pathwayko02020,ko02030,map02020,map02030
KEGG ModuleM00506
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.PAS domain
EggNOG OGs1NQTI@1224,2MHD0@213115,2X889@28221,43CAA@68525,COG0419@1,COG0419@2,COG1352@1,COG1352@2,COG2201@1,COG2201@2
EC2.1.1.80,3.1.1.61,3.5.1.44
COG Functional cat.NT
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02022,ko02035
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.0105858-CDS-M-pyrifera_M_contig103399:495..6511622815539.0105858-CDS-M-pyrifera_M_contig103399:495..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103399 496..651 -
1692277454.9200451-CDS-M-pyrifera_M_contig103399:495..6511692277454.9200451-CDS-M-pyrifera_M_contig103399:495..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103399 496..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103399.718.1prot_M-pyrifera_M_contig103399.718.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103399 496..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103399.718.1

>prot_M-pyrifera_M_contig103399.718.1 ID=prot_M-pyrifera_M_contig103399.718.1|Name=mRNA_M-pyrifera_M_contig103399.718.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
ELYTVNAEYQNKINDLTDMTSDLDSLMESTDVATVFLDENLCIRKFTPQI
GP
back to top

mRNA from alignment at M-pyrifera_M_contig103399:496..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103399.718.1 ID=mRNA_M-pyrifera_M_contig103399.718.1|Name=mRNA_M-pyrifera_M_contig103399.718.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig103399:496..651- (Macrocystis pyrifera P11B4 male)
GAACTCTATACCGTTAATGCTGAGTATCAGAACAAGATCAATGACCTGAC
GGATATGACCTCCGACCTGGACAGTCTGATGGAAAGTACCGATGTCGCGA
CCGTCTTCCTGGACGAAAACCTCTGCATTCGGAAATTTACGCCTCAGATT
GGGCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103399:496..651-

>mRNA_M-pyrifera_M_contig103399.718.1 ID=mRNA_M-pyrifera_M_contig103399.718.1|Name=mRNA_M-pyrifera_M_contig103399.718.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig103399:496..651- (Macrocystis pyrifera P11B4 male)
GAACTCTATACCGTTAATGCTGAGTATCAGAACAAGATCAATGACCTGAC
GGATATGACCTCCGACCTGGACAGTCTGATGGAAAGTACCGATGTCGCGA
CCGTCTTCCTGGACGAAAACCTCTGCATTCGGAAATTTACGCCTCAGATT
GGGCCCGAACTCTATACCGTTAATGCTGAGTATCAGAACAAGATCAATGA
CCTGACGGATATGACCTCCGACCTGGACAGTCTGATGGAAAGTACCGATG
TCGCGACCGTCTTCCTGGACGAAAACCTCTGCATTCGGAAATTTACGCCT
CAGATTGGGCCC
back to top