mRNA_M-pyrifera_M_contig103361.707.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103361.707.1
Unique NamemRNA_M-pyrifera_M_contig103361.707.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103361.707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103361contigM-pyrifera_M_contig103361:5..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue6e-07
Seed eggNOG ortholog44689.DDB0185969
Hectar predicted targeting categoryother localisation
EggNOG OGs2BYKG@1,2RBVR@2759,3XA08@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.5566125-CDS-M-pyrifera_M_contig103361:4..4511622815538.5566125-CDS-M-pyrifera_M_contig103361:4..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103361 5..451 -
1692277454.7674406-CDS-M-pyrifera_M_contig103361:4..4511692277454.7674406-CDS-M-pyrifera_M_contig103361:4..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103361 5..451 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.570403-UTR-M-pyrifera_M_contig103361:451..4631622815538.570403-UTR-M-pyrifera_M_contig103361:451..463Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103361 452..463 -
1692277454.7793121-UTR-M-pyrifera_M_contig103361:451..4631692277454.7793121-UTR-M-pyrifera_M_contig103361:451..463Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103361 452..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103361.707.1prot_M-pyrifera_M_contig103361.707.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103361 5..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103361.707.1

>prot_M-pyrifera_M_contig103361.707.1 ID=prot_M-pyrifera_M_contig103361.707.1|Name=mRNA_M-pyrifera_M_contig103361.707.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MSSYNYPVLYEYGFITALDFNSVALVTVDASSGSWDFVSYRECENGDQWT
DSTCESCPTGQYSSSISYDPCVLCPAGNFLPRRGSTSERDCIKCNRGEFC
GAGATVPINQAQADAEVYAIDDPDPRASPQLHFETTFFYSVVPAAAILG
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mRNA from alignment at M-pyrifera_M_contig103361:5..463-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103361.707.1 ID=mRNA_M-pyrifera_M_contig103361.707.1|Name=mRNA_M-pyrifera_M_contig103361.707.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig103361:5..463- (Macrocystis pyrifera P11B4 male)
ACGCCGGCCGTGATGTCCAGCTACAACTACCCCGTCCTGTACGAATACGG
CTTCATTACAGCCCTGGACTTTAACTCAGTGGCGTTGGTCACCGTCGATG
CTTCCTCTGGTTCCTGGGACTTCGTTTCCTACAGAGAGTGTGAGAATGGT
GACCAGTGGACGGACTCTACGTGCGAGTCCTGCCCAACAGGGCAGTACAG
CTCCAGCATCTCCTACGACCCCTGTGTGCTTTGCCCTGCAGGAAACTTCC
TCCCCAGGAGGGGTTCCACCTCCGAGAGGGACTGCATCAAGTGCAACAGA
GGAGAGTTCTGCGGGGCGGGCGCAACCGTGCCCATCAACCAGGCCCAGGC
CGATGCCGAGGTTTACGCCATCGACGACCCCGACCCGCGCGCTTCGCCGC
AGCTGCACTTCGAGACGACCTTCTTCTACTCTGTCGTGCCGGCCGCAGCC
ATTTTGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103361:5..463-

>mRNA_M-pyrifera_M_contig103361.707.1 ID=mRNA_M-pyrifera_M_contig103361.707.1|Name=mRNA_M-pyrifera_M_contig103361.707.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig103361:5..463- (Macrocystis pyrifera P11B4 male)
ATGTCCAGCTACAACTACCCCGTCCTGTACGAATACGGCTTCATTACAGC
CCTGGACTTTAACTCAGTGGCGTTGGTCACCGTCGATGCTTCCTCTGGTT
CCTGGGACTTCGTTTCCTACAGAGAGTGTGAGAATGGTGACCAGTGGACG
GACTCTACGTGCGAGTCCTGCCCAACAGGGCAGTACAGCTCCAGCATCTC
CTACGACCCCTGTGTGCTTTGCCCTGCAGGAAACTTCCTCCCCAGGAGGG
GTTCCACCTCCGAGAGGGACTGCATCAAGTGCAACAGAGGAGAGTTCTGC
GGGGCGGGCGCAACCGTGCCCATCAACCAGGCCCAGGCCGATGCCGAGGT
TTACGCCATCGACGACCCCGACCCGCGCGCTTCGCCGCAGCTGCACTTCG
AGACGACCTTCTTCTACTCTGTCGTGCCGGCCGCAGCCATTTTGGGCATG
TCCAGCTACAACTACCCCGTCCTGTACGAATACGGCTTCATTACAGCCCT
GGACTTTAACTCAGTGGCGTTGGTCACCGTCGATGCTTCCTCTGGTTCCT
GGGACTTCGTTTCCTACAGAGAGTGTGAGAATGGTGACCAGTGGACGGAC
TCTACGTGCGAGTCCTGCCCAACAGGGCAGTACAGCTCCAGCATCTCCTA
CGACCCCTGTGTGCTTTGCCCTGCAGGAAACTTCCTCCCCAGGAGGGGTT
CCACCTCCGAGAGGGACTGCATCAAGTGCAACAGAGGAGAGTTCTGCGGG
GCGGGCGCAACCGTGCCCATCAACCAGGCCCAGGCCGATGCCGAGGTTTA
CGCCATCGACGACCCCGACCCGCGCGCTTCGCCGCAGCTGCACTTCGAGA
CGACCTTCTTCTACTCTGTCGTGCCGGCCGCAGCCATTTTGGGC
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