mRNA_M-pyrifera_M_contig103305.702.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103305.702.1
Unique NamemRNA_M-pyrifera_M_contig103305.702.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A1R2CG90_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CG90_9CILI)

HSP 1 Score: 127 bits (320), Expect = 1.920e-33
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGVI 246
            LLVDGW++YARKIHYTAD++MA  W L+CG S  LP+FY  FFL MITHR  RD ERC RKYG  WD Y K VPY +IPG+I
Sbjct:  332 LLVDGWWKYARKIHYTADIIMAFIWALSCGYSGFLPYFYPLFFLGMITHRYKRDQERCARKYGKDWDKYIKTVPYVFIPGII 413
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BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A6B2L5L0_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L5L0_9EUKA)

HSP 1 Score: 126 bits (317), Expect = 4.050e-33
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGVI 246
            LLVDGW++YARKIHYTAD +MA+ WGL+CG  H LP+FY  FF  MI HR  RD  RCKRKYG  WD Y   VPY +IPG+I
Sbjct:  315 LLVDGWWKYARKIHYTADTIMALTWGLSCGFDHFLPYFYVCFFSGMIIHRYIRDASRCKRKYGKDWDKYCATVPYVFIPGII 396
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BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A5J4YZJ2_PORPP (Delta(24(24(1)))-sterol reductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZJ2_PORPP)

HSP 1 Score: 127 bits (319), Expect = 4.470e-33
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGVI 246
            LL+DGW+RYARKIHYT D +MA+ WGL CG  HALP+FY  FF +MI HR  RD ERC+RKYG  WD Y +IVPY +IP VI
Sbjct:  369 LLIDGWWRYARKIHYTMDTIMALTWGLNCGIDHALPYFYFVFFFSMIVHRYIRDAERCQRKYGKDWDRYCRIVPYIFIPYVI 450
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A7S4PV59_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PV59_9DINO)

HSP 1 Score: 126 bits (316), Expect = 1.430e-32
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGV 243
            LL+DGWY YARKIHYTAD VMA+ WGL+CG S  LP+FY  FF+AMITHR  RD  RC+ KYG  WD Y K VPY+++P +
Sbjct:  383 LLIDGWYAYARKIHYTADTVMALLWGLSCGFSSLLPYFYFVFFVAMITHRAGRDEARCRAKYGAAWDKYLKAVPYRFVPRI 463
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A2H0VUH0_9BACT (Delta(24(24(1)))-sterol reductase n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34 TaxID=1973936 RepID=A0A2H0VUH0_9BACT)

HSP 1 Score: 125 bits (315), Expect = 1.590e-32
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGV 243
            +LVDGWYRY RKIHY AD +MA+CWGL+CG S  LP+ Y  FF++MI HR  RDT+RC++KYG  WD Y K VPYK+IP V
Sbjct:  364 ILVDGWYRYGRKIHYAADTLMALCWGLSCGFSSFLPYLYPLFFVSMIVHRYHRDTKRCEKKYGKDWDTYCKTVPYKFIPYV 444
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A849Z4A2_9DELT (Delta(24(24(1)))-sterol reductase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A849Z4A2_9DELT)

HSP 1 Score: 120 bits (302), Expect = 2.000e-32
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGV 243
            LLVDGW+RYARKIHYTAD+VMA CW LACG S  LP+ Y AFFL MI HR ARD  RC+ KYG  WD Y   VP ++ P +
Sbjct:  133 LLVDGWWRYARKIHYTADIVMAFCWALACGFSGVLPYLYPAFFLGMILHRAARDEARCRAKYGADWDRYLAKVPSRFFPSI 213
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A6L7JFV8_9CHLR (Delta(24(24(1)))-sterol reductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7JFV8_9CHLR)

HSP 1 Score: 125 bits (313), Expect = 3.200e-32
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGV 243
            LLVDGW+RYARKIHYTAD++MA+ WGL CG  H LP+FY  FF+ MI HR  RDT RC++KYG+ WD Y K VP+ +IP V
Sbjct:  367 LLVDGWWRYARKIHYTADVIMALSWGLICGFGHFLPYFYVTFFVLMILHRARRDTLRCRKKYGSDWDRYTKTVPHLFIPKV 447
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A7Y3BRT4_9DELT (Delta(24(24(1)))-sterol reductase n=3 Tax=Bacteria TaxID=2 RepID=A0A7Y3BRT4_9DELT)

HSP 1 Score: 124 bits (310), Expect = 1.090e-31
Identity = 52/81 (64.20%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGV 243
            LLVDGW+RYARKIHYTAD++MA+ WGL CG  H LP+ Y  FF+ MI HR  RD  RCK+KYG  WD Y + VPY +IPGV
Sbjct:  387 LLVDGWWRYARKIHYTADILMALSWGLICGFDHFLPYLYVTFFVVMILHRARRDIRRCKKKYGADWDRYCEEVPYLFIPGV 467
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A524NZ61_9DELT (Delta(24(24(1)))-sterol reductase (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524NZ61_9DELT)

HSP 1 Score: 120 bits (301), Expect = 2.560e-31
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGV 243
            LLVDGW+RYARKIHYTAD+ MA+ WGL CG  H LP+ Y +FF+ MI HR  RD ERCK KYG  WD Y   VPY +IP V
Sbjct:  242 LLVDGWWRYARKIHYTADVAMALSWGLICGFDHFLPYLYVSFFVVMILHRAGRDIERCKTKYGADWDRYCDEVPYLFIPYV 322
[Close]
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Match: A0A2H0VMK4_9BACT (Delta(24(24(1)))-sterol reductase n=1 Tax=Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_35_9 TaxID=1973935 RepID=A0A2H0VMK4_9BACT)

HSP 1 Score: 122 bits (306), Expect = 3.150e-31
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:    1 LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHREARDTERCKRKYGTGWDVYNKIVPYKYIPGV 243
            LL+DGWYRY RKIHYTAD +MAI WGL+CG S  LP+ Y  FF  MITHR  RD  RC +KYG+ WD Y K VPYK+IP V
Sbjct:  364 LLIDGWYRYGRKIHYTADTLMAITWGLSCGFSGILPYLYPVFFALMITHRYQRDVYRCSKKYGSDWDRYCKAVPYKFIPYV 444
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103305.702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R2CG90_9CILI1.920e-3367.07Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A6B2L5L0_9EUKA4.050e-3364.63Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A5J4YZJ2_PORPP4.470e-3365.85Delta(24(24(1)))-sterol reductase n=1 Tax=Porphyri... [more]
A0A7S4PV59_9DINO1.430e-3264.20Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A2H0VUH0_9BACT1.590e-3264.20Delta(24(24(1)))-sterol reductase n=1 Tax=Chlamydi... [more]
A0A849Z4A2_9DELT2.000e-3264.20Delta(24(24(1)))-sterol reductase n=1 Tax=Polyangi... [more]
A0A6L7JFV8_9CHLR3.200e-3264.20Delta(24(24(1)))-sterol reductase n=1 Tax=Chlorofl... [more]
A0A7Y3BRT4_9DELT1.090e-3164.20Delta(24(24(1)))-sterol reductase n=3 Tax=Bacteria... [more]
A0A524NZ61_9DELT2.560e-3164.20Delta(24(24(1)))-sterol reductase (Fragment) n=1 T... [more]
A0A2H0VMK4_9BACT3.150e-3165.43Delta(24(24(1)))-sterol reductase n=1 Tax=Chlamydi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103305contigM-pyrifera_M_contig103305:17..265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.0
Seed ortholog evalue1e-24
Seed eggNOG ortholog227377.CBU_1206
Preferred nameyeeR
KEGG rclassRC00138,RC00237,RC02653
KEGG koko:K00213,ko:K00223,ko:K21310
KEGG ReactionR01451,R01456,R05641,R07487,R07492,R11546
KEGG Pathwayko00100,ko00920,ko01100,ko01110,ko01130,map00100,map00920,map01100,map01110,map01130
KEGG ModuleM00101,M00102
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.Ergosterol biosynthesis ERG4/ERG24 family
EggNOG OGs1JCMK@118969,1NFH1@1224,1SDM5@1236,COG2020@1,COG2020@2
EC1.3.1.21,1.3.1.71,2.1.1.334
COG Functional cat.O
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.3562107-CDS-M-pyrifera_M_contig103305:16..2651622815538.3562107-CDS-M-pyrifera_M_contig103305:16..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103305 17..265 +
1692277454.6771746-CDS-M-pyrifera_M_contig103305:16..2651692277454.6771746-CDS-M-pyrifera_M_contig103305:16..265Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103305 17..265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103305.702.1prot_M-pyrifera_M_contig103305.702.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103305 17..265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103305.702.1

>prot_M-pyrifera_M_contig103305.702.1 ID=prot_M-pyrifera_M_contig103305.702.1|Name=mRNA_M-pyrifera_M_contig103305.702.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
LLVDGWYRYARKIHYTADLVMAICWGLACGTSHALPFFYAAFFLAMITHR
EARDTERCKRKYGTGWDVYNKIVPYKYIPGVI*
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mRNA from alignment at M-pyrifera_M_contig103305:17..265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103305.702.1 ID=mRNA_M-pyrifera_M_contig103305.702.1|Name=mRNA_M-pyrifera_M_contig103305.702.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig103305:17..265+ (Macrocystis pyrifera P11B4 male)
CTCCTCGTGGACGGGTGGTATCGGTACGCCAGGAAAATCCACTACACTGC
CGACCTCGTCATGGCCATCTGCTGGGGCCTCGCCTGTGGCACCTCCCACG
CGCTCCCTTTCTTCTACGCAGCCTTCTTCCTCGCCATGATCACCCACAGA
GAGGCGAGAGACACGGAACGGTGCAAGAGGAAGTATGGGACGGGGTGGGA
CGTCTACAACAAAATCGTGCCATACAAGTACATCCCAGGAGTCATCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103305:17..265+

>mRNA_M-pyrifera_M_contig103305.702.1 ID=mRNA_M-pyrifera_M_contig103305.702.1|Name=mRNA_M-pyrifera_M_contig103305.702.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig103305:17..265+ (Macrocystis pyrifera P11B4 male)
CTCCTCGTGGACGGGTGGTATCGGTACGCCAGGAAAATCCACTACACTGC
CGACCTCGTCATGGCCATCTGCTGGGGCCTCGCCTGTGGCACCTCCCACG
CGCTCCCTTTCTTCTACGCAGCCTTCTTCCTCGCCATGATCACCCACAGA
GAGGCGAGAGACACGGAACGGTGCAAGAGGAAGTATGGGACGGGGTGGGA
CGTCTACAACAAAATCGTGCCATACAAGTACATCCCAGGAGTCATCTAGC
TCCTCGTGGACGGGTGGTATCGGTACGCCAGGAAAATCCACTACACTGCC
GACCTCGTCATGGCCATCTGCTGGGGCCTCGCCTGTGGCACCTCCCACGC
GCTCCCTTTCTTCTACGCAGCCTTCTTCCTCGCCATGATCACCCACAGAG
AGGCGAGAGACACGGAACGGTGCAAGAGGAAGTATGGGACGGGGTGGGAC
GTCTACAACAAAATCGTGCCATACAAGTACATCCCAGGAGTCATCTAG
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