mRNA_M-pyrifera_M_contig103291.694.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103291.694.1
Unique NamemRNA_M-pyrifera_M_contig103291.694.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A5A8CW99_CAFRO (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW99_CAFRO)

HSP 1 Score: 97.8 bits (242), Expect = 1.420e-24
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKK 273
            M G +PV LL EA GHPV +ELK GELY+G L E++ ++N  +     TA+DGR+  +E+V LRG+QVRL  LPD LQS+P+F ++  A K
Sbjct:    1 MDGGVPVKLLHEAQGHPVTLELKNGELYRGVLVESDSAMNCQMRNVVFTARDGRRTRMENVFLRGTQVRLALLPDILQSAPMFKKLAEAAK 91          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A6G0XIN2_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIN2_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.000e-24
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA 291
            +P++LL E  GH + +ELK GE+Y+G L E+E+S+N  L++ TLT++DG+   +E V +RGSQV+L  LPD LQ SPLF +V+  KK  EK A
Sbjct:    7 VPLSLLHEGEGHSITLELKNGEIYRGHLVESEDSMNCQLKQVTLTSRDGQIHRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKKPDEKKA 99          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A7S1C9Q8_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Q8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.050e-22
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEK 285
            MAG IPV LL E  G+PV VEL+ GE+Y+G L   E+++N+ L   T  A+DGR   +EHV LRGSQ+R V LPD L+ +P+F +V+ AK + EK
Sbjct:    1 MAG-IPVKLLHEGEGNPVTVELRNGEIYRGQLDAAEDNMNVQLSGVTFRARDGRISKLEHVYLRGSQIRFVVLPDMLKEAPIFKKVQSAKTKNEK 94          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: F6KSS7_PHYPO (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Physarum polycephalum TaxID=5791 RepID=F6KSS7_PHYPO)

HSP 1 Score: 92.8 bits (229), Expect = 3.510e-22
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAK 270
            M+  +P+ LL EA GH V +ELKTGE+Y+G L E+E+++N  L   TLTA+DGR  ++EH  +RGS++R + LPD L+++P+F RV  +K
Sbjct:    1 MSIGVPIKLLHEAEGHIVTIELKTGEVYRGQLIESEDNMNCQLGNITLTARDGRISNLEHAYVRGSKIRFLILPDMLKNAPMFKRVEASK 90          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A485LB96_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.560e-22
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA 291
            +P++LL E  GH + +ELK GE+Y+G L E+E+S+N  L++ TLT +DG+   +E V +RGSQV+L  LPD LQ SPLF +V+  KK  EKA+
Sbjct:    7 VPLSLLHEGEGHQITLELKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKKP-EKAS 98          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A8J8NI15_HALGN (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NI15_HALGN)

HSP 1 Score: 91.3 bits (225), Expect = 6.970e-22
Identity = 43/96 (44.79%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKA 288
            M+  +P+ LL EA  H +  ELK+GELY+G+L E E+++NM L+   +TA+DG+Q  ++ V +RGSQVR V +PD L++SP+F R+    K+ + A
Sbjct:    1 MSIGVPIKLLHEAENHVITCELKSGELYRGYLMEAEDTMNMRLDDVYVTARDGKQYHLDQVFVRGSQVRFVVIPDMLKNSPMFKRISNQAKKGKNA 96          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A2R5GRQ4_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRQ4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.540e-21
Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   10 SIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRV 258
            S+P+ LL E IGHPV VE+K GE Y+G L E E ++N+ L  AT TA++G++R +EH  LRG+ V+ + LPDFL+ + +F  V
Sbjct:    8 SVPIRLLLEGIGHPVTVEMKNGESYRGQLVEAETTMNLQLSGATHTARNGQRRKLEHAYLRGTSVKFIVLPDFLREATIFKSV 90          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.320e-21
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQ 276
            +P+ +L E  GH + VEL+ GE+Y+G L E E+++N  LE  T+TA+DGR   +E V +RGSQV+L+ LP+ L+ SP F +V+  KK+
Sbjct:    8 VPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKKK 95          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A3R7A9P8_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A9P8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.010e-21
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   13 IPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKK 273
            +P++LL E  GH + +ELK GE+Y+G L E+E+S+N  L++ TLT +DG+   +E V +RGSQV+L  LPD LQ SPLF +V+  KK
Sbjct:  105 VPLSLLHEGEGHAITLELKNGEIYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYIRGSQVKLFILPDLLQKSPLFKKVQALKK 191          
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Match: A0A5K1HM69_9MAGN (Small nuclear ribonucleoprotein Sm D3 (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HM69_9MAGN)

HSP 1 Score: 89.4 bits (220), Expect = 5.400e-21
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   16 PVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTAKDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQ 276
            PV LL EA  H V VE+K+GE+Y+GFL + E+++N+ L+  T+ +KDGR   VE V LRGSQ+R V +P   +++P+F RVR   KQ
Sbjct:   11 PVKLLHEAKHHVVTVEMKSGEMYRGFLADAEDTMNVRLDDVTMFSKDGRSMPVEQVYLRGSQIRFVIVPSMFKNAPMFKRVRAQAKQ 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103291.694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CW99_CAFRO1.420e-2451.65Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Cafe... [more]
A0A6G0XIN2_9STRA9.000e-2450.54Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Apha... [more]
A0A7S1C9Q8_9STRA3.050e-2251.58Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Bico... [more]
F6KSS7_PHYPO3.510e-2248.89Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Phys... [more]
A0A485LB96_9STRA4.560e-2250.54Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Apha... [more]
A0A8J8NI15_HALGN6.970e-2244.79Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Halt... [more]
A0A2R5GRQ4_9STRA2.540e-2149.40Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hond... [more]
A0A7S2S181_9STRA3.320e-2146.59Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
A0A3R7A9P8_9STRA4.010e-2150.57Sm domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A5K1HM69_9MAGN5.400e-2149.43Small nuclear ribonucleoprotein Sm D3 (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103291contigM-pyrifera_M_contig103291:185..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue6.5e-18
Seed eggNOG ortholog112098.XP_008611171.1
Preferred nameSMD3
KEGG koko:K07442,ko:K11088,ko:K18738
KEGG Pathwayko03040,ko04139,ko05322,map03040,map04139,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034622,GO:0034641,GO:0034715,GO:0034719,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065007,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990141,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.U7 snRNA binding
EggNOG OGsCOG1958@1,KOG3172@2759
EC2.1.1.219,2.1.1.220
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03032,ko03041
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.8380952-CDS-M-pyrifera_M_contig103291:184..4751622815537.8380952-CDS-M-pyrifera_M_contig103291:184..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103291 185..475 -
1692277454.397194-CDS-M-pyrifera_M_contig103291:184..4751692277454.397194-CDS-M-pyrifera_M_contig103291:184..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103291 185..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103291.694.1prot_M-pyrifera_M_contig103291.694.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103291 185..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103291.694.1

>prot_M-pyrifera_M_contig103291.694.1 ID=prot_M-pyrifera_M_contig103291.694.1|Name=mRNA_M-pyrifera_M_contig103291.694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MAGSIPVALLAEAIGHPVIVELKTGELYKGFLCETEESLNMVLEKATLTA
KDGRQRSVEHVLLRGSQVRLVALPDFLQSSPLFTRVRRAKKQVEKAA
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mRNA from alignment at M-pyrifera_M_contig103291:185..475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103291.694.1 ID=mRNA_M-pyrifera_M_contig103291.694.1|Name=mRNA_M-pyrifera_M_contig103291.694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig103291:185..475- (Macrocystis pyrifera P11B4 male)
ATGGCAGGCTCGATTCCCGTTGCGCTGCTTGCAGAGGCAATCGGGCACCC TGTGATCGTGGAGCTGAAGACGGGGGAGCTGTACAAGGGGTTTCTGTGCG AGACAGAAGAGTCTCTCAACATGGTGCTGGAGAAAGCCACGCTGACGGCC AAGGACGGGCGACAGCGAAGCGTGGAGCACGTGCTGCTGCGCGGCAGCCA GGTGCGCCTGGTGGCCCTGCCCGACTTCCTGCAGTCCAGCCCACTCTTCA CCCGAGTGAGGCGCGCCAAGAAGCAGGTCGAGAAAGCCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103291:185..475-

>mRNA_M-pyrifera_M_contig103291.694.1 ID=mRNA_M-pyrifera_M_contig103291.694.1|Name=mRNA_M-pyrifera_M_contig103291.694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig103291:185..475- (Macrocystis pyrifera P11B4 male)
ATGGCAGGCTCGATTCCCGTTGCGCTGCTTGCAGAGGCAATCGGGCACCC
TGTGATCGTGGAGCTGAAGACGGGGGAGCTGTACAAGGGGTTTCTGTGCG
AGACAGAAGAGTCTCTCAACATGGTGCTGGAGAAAGCCACGCTGACGGCC
AAGGACGGGCGACAGCGAAGCGTGGAGCACGTGCTGCTGCGCGGCAGCCA
GGTGCGCCTGGTGGCCCTGCCCGACTTCCTGCAGTCCAGCCCACTCTTCA
CCCGAGTGAGGCGCGCCAAGAAGCAGGTCGAGAAAGCCGCCATGGCAGGC
TCGATTCCCGTTGCGCTGCTTGCAGAGGCAATCGGGCACCCTGTGATCGT
GGAGCTGAAGACGGGGGAGCTGTACAAGGGGTTTCTGTGCGAGACAGAAG
AGTCTCTCAACATGGTGCTGGAGAAAGCCACGCTGACGGCCAAGGACGGG
CGACAGCGAAGCGTGGAGCACGTGCTGCTGCGCGGCAGCCAGGTGCGCCT
GGTGGCCCTGCCCGACTTCCTGCAGTCCAGCCCACTCTTCACCCGAGTGA
GGCGCGCCAAGAAGCAGGTCGAGAAAGCCGCC
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