mRNA_M-pyrifera_M_contig103264.685.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103264.685.1
Unique NamemRNA_M-pyrifera_M_contig103264.685.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: A0A834AQE4_9CHIR (Glycosyltransferase like domain containing 1 n=1 Tax=Phyllostomus discolor TaxID=89673 RepID=A0A834AQE4_9CHIR)

HSP 1 Score: 92.0 bits (227), Expect = 9.710e-22
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAP 294
            F E+K  LE   S+LHWG LP  E+Y  +L  ADVV+STA HEFFGV+++EAV  GC+PLCP+ L +P   P  Y     LY T  QL K L+     P
Sbjct:   12 FSESKKALE--SSVLHWGYLPSREDYFHVLCLADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEIFPAEY-----LYSTPEQLSKRLQNFCKRP 103          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: A0A6I9Y9R9_9SAUR (glycosyltransferase-like domain-containing protein 1 n=1 Tax=Thamnophis sirtalis TaxID=35019 RepID=A0A6I9Y9R9_9SAUR)

HSP 1 Score: 94.0 bits (232), Expect = 1.150e-21
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAPARVR 306
            F EAK  LE   S+LHWG LP  ++Y Q+L  ADVV+STA HEFFGV+++EAV  GC+PLCP  L +P   P  Y     LY T  QL K L+     P  VR
Sbjct:   91 FSEAKKTLE--SSVLHWGYLPSRDDYFQVLCMADVVISTAKHEFFGVAMIEAVHCGCYPLCPNALVYPEIFPAEY-----LYSTPEQLIKRLQNFCKRPEIVR 186          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: A0A654GPG8_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GPG8_9CEST)

HSP 1 Score: 95.9 bits (237), Expect = 1.420e-21
Identity = 56/106 (52.83%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPGE-EYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYL-PRAYSGLP--CLYRTQAQLEKALRQMATAPARVR 306
            F   +  L  RG +  WG  P   +Y + LA  DVVVSTA HEFFGVSVVEAV AGC PLCP RL++P  L P+  S +   CLY T AQL+K LR+ A  PA++R
Sbjct:  171 FSNVEQILRSRGCVAAWGFAPSRTDYWRELADCDVVVSTAHHEFFGVSVVEAVSAGCVPLCPNRLSYPELLAPQHKSQIEDGCLYATLAQLQKRLRRWAPRPAKLR 276          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: A0A3P7LZP6_DIBLA (Uncharacterized protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7LZP6_DIBLA)

HSP 1 Score: 93.6 bits (231), Expect = 2.400e-21
Identity = 54/106 (50.94%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPGE-EYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGL---PCLYRTQAQLEKALRQMATAPARVR 306
            F  A+  L  RG +  WG      +Y + LA  DVVVSTA HEFFGVSVVEAV AGC PLCP RL++P  L   +       CLY T AQL+K LR+    PA+VR
Sbjct:   84 FSNAEEILRSRGCVAAWGFASSRLDYWRELADCDVVVSTADHEFFGVSVVEAVSAGCVPLCPNRLSYPELLAPQHKAQIEDGCLYATMAQLQKRLRRWIARPAKVR 189          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: UPI0010FBB4B8 (glycosyltransferase-like domain-containing protein 1 n=1 Tax=Protobothrops mucrosquamatus TaxID=103944 RepID=UPI0010FBB4B8)

HSP 1 Score: 93.6 bits (231), Expect = 2.650e-21
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAPARVR 306
            F EAK  LE   S+LHWG LP  ++Y Q+L  ADVV+STA HEFFGV+++EAV  GC+PLCP  L +P   P  Y     LY T  QL K L+     P  +R
Sbjct:  115 FSEAKKTLE--SSVLHWGYLPSRDDYFQVLCMADVVISTAKHEFFGVAMIEAVHCGCYPLCPNALVYPEIFPAEY-----LYSTPEQLIKRLQNFCKRPEIIR 210          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: UPI00188F9BCB (glycosyltransferase-like domain-containing protein 1 n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188F9BCB)

HSP 1 Score: 90.9 bits (224), Expect = 4.500e-21
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAPARVR 306
            F E+K  L    S+LHWG LP  ++Y Q+L  ADVV+STA HEFFGV+++EAV  GC+PLCP+ L +P   P  Y     LY T  QL K L+     P  VR
Sbjct:   50 FSESKKAL--GSSVLHWGYLPSKDDYFQVLCMADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEIFPAEY-----LYSTPEQLSKRLQNFCKRPDIVR 145          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: A0A3L8SN31_CHLGU (Uncharacterized protein (Fragment) n=1 Tax=Chloebia gouldiae TaxID=44316 RepID=A0A3L8SN31_CHLGU)

HSP 1 Score: 90.1 bits (222), Expect = 5.390e-21
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAPARVR 306
            F EA+  L    S+LHWG LP  ++Y + L TADVV+STA HEFFGV+++EAV  GC+PLCP+ L +P   P  Y     LY T  QL K L+     P  VR
Sbjct:    2 FSEAREVL--GSSVLHWGYLPSKDDYFRALCTADVVISTAKHEFFGVAMIEAVHCGCYPLCPKALVYPEIFPAEY-----LYSTPEQLFKRLQNFCKRPHIVR 97          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: A0A340Y2L0_LIPVE (Glycosyltransferase-like domain-containing protein 1 n=38 Tax=Cetacea TaxID=9721 RepID=A0A340Y2L0_LIPVE)

HSP 1 Score: 95.5 bits (236), Expect = 5.970e-21
Identity = 53/103 (51.46%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAPARVR 306
            F E+K  L    SLLHWG LP  +EY Q+L TADVV+STA HEFFGV+++EAV  GC+PLCP+ L +P   P  Y     LY T  QL K L+     P  VR
Sbjct:  324 FSESKKAL--GSSLLHWGYLPSKDEYFQVLCTADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEIFPAEY-----LYSTPEQLSKRLQNFCKRPDIVR 419          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: A0A2Y9MTU3_DELLE (Glycosyltransferase-like domain-containing protein 1 n=3 Tax=Cetacea TaxID=9721 RepID=A0A2Y9MTU3_DELLE)

HSP 1 Score: 94.4 bits (233), Expect = 6.280e-21
Identity = 52/103 (50.49%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAPARVR 306
            F E+K  L    S+LHWG LP  +EY Q+L TADVV+STA HEFFGV+++EAV  GC+PLCP+ L +P   P  Y     LY T  QL K L+     P  VR
Sbjct:  213 FSESKKAL--GSSVLHWGYLPSKDEYFQVLCTADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEIFPAEY-----LYSTPEQLSKRLQNFCKRPDIVR 308          
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Match: UPI001E1DDD88 (glycosyltransferase-like domain-containing protein 1 isoform X1 n=4 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDD88)

HSP 1 Score: 95.5 bits (236), Expect = 7.860e-21
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 FEEAKSWLEERGSLLHWGRLPG-EEYRQLLATADVVVSTALHEFFGVSVVEAVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAP 294
            FE +K  L+++  +LHWG LP  ++Y ++L +AD VVSTA HEFFGV+++EAV  GC+PLCP +L +P   P+      CLY T+ QL K LR+M   P
Sbjct:  397 FERSKGVLQDK--ILHWGFLPSKQQYYEVLKSADCVVSTANHEFFGVAMLEAVHLGCFPLCPSKLVYPEIFPKE-----CLYNTEQQLYKRLREMCRKP 488          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103264.685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A834AQE4_9CHIR9.710e-2249.49Glycosyltransferase like domain containing 1 n=1 T... [more]
A0A6I9Y9R9_9SAUR1.150e-2150.49glycosyltransferase-like domain-containing protein... [more]
A0A654GPG8_9CEST1.420e-2152.83Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A3P7LZP6_DIBLA2.400e-2150.94Uncharacterized protein n=1 Tax=Dibothriocephalus ... [more]
UPI0010FBB4B82.650e-2149.51glycosyltransferase-like domain-containing protein... [more]
UPI00188F9BCB4.500e-2148.54glycosyltransferase-like domain-containing protein... [more]
A0A3L8SN31_CHLGU5.390e-2148.54Uncharacterized protein (Fragment) n=1 Tax=Chloebi... [more]
A0A340Y2L0_LIPVE5.970e-2151.46Glycosyltransferase-like domain-containing protein... [more]
A0A2Y9MTU3_DELLE6.280e-2150.49Glycosyltransferase-like domain-containing protein... [more]
UPI001E1DDD887.860e-2148.48glycosyltransferase-like domain-containing protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103264contigM-pyrifera_M_contig103264:82..604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score94.7
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog118797.XP_007467533.1
Preferred nameGTDC1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyltransferase-like domain-containing protein 1 isoform
EggNOG OGs28I8S@1,2QQJ3@2759,38GV5@33154,3BDEQ@33208,3CTM1@33213,3JC7Q@40674,48327@7711,48VB1@7742,4IVRE@91561
COG Functional cat.S
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.3356187-CDS-M-pyrifera_M_contig103264:81..2071622815537.3356187-CDS-M-pyrifera_M_contig103264:81..207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103264 82..207 +
1692277454.195013-CDS-M-pyrifera_M_contig103264:81..2071692277454.195013-CDS-M-pyrifera_M_contig103264:81..207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103264 82..207 +
1622815537.3489237-CDS-M-pyrifera_M_contig103264:424..6041622815537.3489237-CDS-M-pyrifera_M_contig103264:424..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103264 425..604 +
1692277454.2079694-CDS-M-pyrifera_M_contig103264:424..6041692277454.2079694-CDS-M-pyrifera_M_contig103264:424..604Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103264 425..604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103264.685.1prot_M-pyrifera_M_contig103264.685.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103264 82..604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103264.685.1

>prot_M-pyrifera_M_contig103264.685.1 ID=prot_M-pyrifera_M_contig103264.685.1|Name=mRNA_M-pyrifera_M_contig103264.685.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
FEEAKSWLEERGSLLHWGRLPGEEYRQLLATADVVVSTALHEFFGVSVVE
AVLAGCWPLCPERLAFPGYLPRAYSGLPCLYRTQAQLEKALRQMATAPAR
VR
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mRNA from alignment at M-pyrifera_M_contig103264:82..604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103264.685.1 ID=mRNA_M-pyrifera_M_contig103264.685.1|Name=mRNA_M-pyrifera_M_contig103264.685.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=523bp|location=Sequence derived from alignment at M-pyrifera_M_contig103264:82..604+ (Macrocystis pyrifera P11B4 male)
TTTGAGGAAGCAAAGTCATGGCTAGAAGAACGGGGGAGCCTCCTGCACTG GGGCCGCCTCCCGGGAGAGGAATACCGCCAGTTGCTCGCCACCGCCGACG TCGTCGTCTCCACAGCTCTCCACGAGGTATCGCCTCCTCTCTGTATCCTA ATTCCTCTCATTGTGCAATCATTGCTTTCGCTTGACACGCGCACGCGCCA CACCCACTACTAGGCACACAAAGCATACTCATCACACACACCATCTCTCG GACCTGGGCACCCACACCGTCAGCTCCATTGGAGGCCCCAGTTTACAGTC ACCTTTGCCTGCCACCTTGTGGACATGCTGACGAGTCGTGTAGTTCTTCG GAGTATCTGTTGTGGAGGCAGTGCTGGCGGGTTGTTGGCCCCTCTGCCCC GAGCGACTGGCCTTTCCAGGCTACCTTCCACGGGCCTACTCAGGACTGCC CTGTCTCTACCGCACGCAAGCACAGCTAGAGAAGGCACTGCGTCAGATGG CCACAGCTCCTGCGAGAGTGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103264:82..604+

>mRNA_M-pyrifera_M_contig103264.685.1 ID=mRNA_M-pyrifera_M_contig103264.685.1|Name=mRNA_M-pyrifera_M_contig103264.685.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig103264:82..604+ (Macrocystis pyrifera P11B4 male)
TTTGAGGAAGCAAAGTCATGGCTAGAAGAACGGGGGAGCCTCCTGCACTG
GGGCCGCCTCCCGGGAGAGGAATACCGCCAGTTGCTCGCCACCGCCGACG
TCGTCGTCTCCACAGCTCTCCACGAGTTTGAGGAAGCAAAGTCATGGCTA
GAAGAACGGGGGAGCCTCCTGCACTGGGGCCGCCTCCCGGGAGAGGAATA
CCGCCAGTTGCTCGCCACCGCCGACGTCGTCGTCTCCACAGCTCTCCACG
AGTTCTTCGGAGTATCTGTTGTGGAGGCAGTGCTGGCGGGTTGTTGGCCC
CTCTGCCCCGAGCGACTGGCCTTTCCAGGCTACCTTCCACGGGCCTACTC
AGGACTGCCCTGTCTCTACCGCACGCAAGCACAGCTAGAGAAGGCACTGC
GTCAGATGGCCACAGCTCCTGCGAGAGTGCGGTTCTTCGGAGTATCTGTT
GTGGAGGCAGTGCTGGCGGGTTGTTGGCCCCTCTGCCCCGAGCGACTGGC
CTTTCCAGGCTACCTTCCACGGGCCTACTCAGGACTGCCCTGTCTCTACC
GCACGCAAGCACAGCTAGAGAAGGCACTGCGTCAGATGGCCACAGCTCCT
GCGAGAGTGCGG
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