mRNA_M-pyrifera_M_contig103257.683.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: A0A7V1IGF6_9DELT (TetR/AcrR family transcriptional regulator n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V1IGF6_9DELT) HSP 1 Score: 134 bits (337), Expect = 1.440e-35 Identity = 84/170 (49.41%), Postives = 114/170 (67.06%), Query Frame = 1 Query: 25 KRDRTRRKLLDAGLEVMAERGEALTASDVVNAADVSNGTFYNHFLDREDFIQALALESLEVITTGSADDTEGA-DPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSGV--RQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVS----PDAPAEA 513 K++RTRR+L+ AGL V+AE+G+ LT SDVV A VSNGTFYN+F+DR+D ++ LA +S ++ +A EG DPA RFA+ATTRVL+ A + W R +LRLA P SG+ ++L DL EG+ GRF G D T+D V+G I+ +IRR+V PDAP +A Sbjct: 25 KKERTRRQLIAAGLRVLAEKGQGLTVSDVVAEAGVSNGTFYNYFVDRDDLMEVLAEQS--ALSLAAAAAMEGVEDPARRFALATTRVLQHAIEDDTWARVMLRLA--GRP-GSGIDLSRYLREDLEEGYALGRFETGADDATLDQVTGLIVMTIRRIVEGRAGPDAPRQA 189
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: UPI0019FBCE46 (TetR/AcrR family transcriptional regulator n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019FBCE46) HSP 1 Score: 99.8 bits (247), Expect = 1.120e-22 Identity = 65/185 (35.14%), Postives = 103/185 (55.68%), Query Frame = 1 Query: 25 KRDRTRRKLLDAGLEVMAERG-EALTASDVVNAADVSNGTFYNHFLDREDFIQALALESLEVITTGS-ADDTEGADPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVSPDAPAEAAGNDAIPTVVSRL-LEAIGV 570 KR+RTR KLL+A +V A + +A+T D+++AA V+ GTFYN+F RED ++A+ E + ++ T ADPA R A A + L A R+ WG I+R+ A PL + + Q + +DL G + RF +DLV GT + +IR ++ P++ P +++L L+ +GV Sbjct: 13 KRERTRAKLLEAAYQVFAAKELDAVTIDDIISAAGVARGTFYNYFETREDVLKAVVASLAEAMNQAVWSESTAIADPAERMAFAIRQFLHQAKRDATWGWLIVRIGLVAAPLTATIHQGVRSDLEAGIQQQRFQVDSVQAAIDLVMGTGLMAIRSILEGQTPSD------YPEQIAKLILQTLGV 191
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: A0A1Q3L5E1_9PROT (HTH tetR-type domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1Q3L5E1_9PROT) HSP 1 Score: 91.3 bits (225), Expect = 1.630e-19 Identity = 65/192 (33.85%), Postives = 102/192 (53.12%), Query Frame = 1 Query: 1 TMNKPRPPKRDRTRRKLLDAGLEVMAERGEALTA-SDVVNAADVSNGTFYNHFLDREDFIQALALE-SLEVITTGSADDTEGADPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVSPDAPAEAAGNDAIPTVVSRLLEAIGV 570 T +PR PKR+RTRR+++ A +EVMAERG A A ++ + A+V+ GTFYNHF D+ D ++A+A+ S E++ A + R R L A P +L LA + + + + +LAD+ G R F + VDLV G IM ++R++ PA D + VV+ +L+ +G+ Sbjct: 4 TKPRPRLPKRERTRRQIISAAIEVMAERGLAQFAVQEIADRAEVTTGTFYNHFRDKADIVEAVAIRFSSEMMEAAEERRRTLASGSERLVDGCRRYLSIAREAPSTALLVLELAIASPRMLETIGEFVLADVRRGVRQKEFRIFGEQAAVDLVHGYIMLAMRQIALRPMPA---AYDRV--VVATILQGLGL 190
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: A0A418WT66_9PROT (TetR/AcrR family transcriptional regulator n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WT66_9PROT) HSP 1 Score: 88.2 bits (217), Expect = 4.110e-18 Identity = 65/179 (36.31%), Postives = 88/179 (49.16%), Query Frame = 1 Query: 4 MNKPRPPKRDR-TRRKLLDAGLEVMAERG-EALTASDVVNAADVSNGTFYNHFLDREDFIQALALESLEVITTGSADDTEG-ADPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVSPD--APAEAAGND 525 M +PR +R R TR +LL+A LE+MAERG E + +++ AADV G+FYNHF +E AL E EG DPA ++ + A EP+WGR ++R L G+ L D+ G GRFT D T V GT++ +I + D A AE G D Sbjct: 13 MREPRGARRKRETRARLLEAALELMAERGVEGVAINEITEAADVGFGSFYNHFKSKEAIYDALIDTVFEEFGDTLDRLAEGIGDPAEYISICIRHAIRRAGHEPVWGRFLVRQGLSGQMLSRGLGPRLQRDIRRGLDAGRFTADDPVLTFIAVGGTVLTAISAQLQSDNAAVAEQLGAD 191
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: A0A8J3E314_9PROT (Putative TetR-family transcriptional regulator n=1 Tax=Aliidongia dinghuensis TaxID=1867774 RepID=A0A8J3E314_9PROT) HSP 1 Score: 88.6 bits (218), Expect = 4.430e-18 Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 1 Query: 13 PRPPKRDR-TRRKLLDAGLEVMAERG-EALTASDVVNAADVSNGTFYNHFLDREDFIQALALESLEVITTGSADDT---EGADPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASI 477 PR +R R TR +LLDA LE+MAE+G E + +++ AADV G+FYNHF +E AL E G+A D + ADPA +V+ L A REP+WGR ++R A L G+ Q LL D+ +G RF D GT++ASI Sbjct: 28 PRGERRKRETRSRLLDAALELMAEKGMEGVAINEITEAADVGFGSFYNHFESKEAIYAALLDAVFEEF--GNALDRLTQDIADPAEVISVSVRHTLRRAQREPVWGRFLMREGFSARVLERGLGQRLLRDIEKGVNEKRFPNDDILMMSTSAGGTVLASI 185
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: A0A2Z4UQ20_9HYPH (Putative HTH-type transcriptional regulator YvdT n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UQ20_9HYPH) HSP 1 Score: 85.9 bits (211), Expect = 2.160e-17 Identity = 54/158 (34.18%), Postives = 80/158 (50.63%), Query Frame = 1 Query: 22 PKRDRTRRKLLDAGLEVMAERGEALTA-SDVVNAADVSNGTFYNHFLDREDFIQALALESLEVITTGSADDTEGADPAW-RFAVATTRVLEAATREPLWGRAILRLAECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMV 489 PKRDRTR L+D+ +EV+A++G L SD+ A ++NGTFYNHF D+++ + A + ++ D A R ATTR + A E WG I+ + P+ + Q L ADL G G F D +D ++ I+ SIR + Sbjct: 15 PKRDRTRLALIDSTVEVVAQKGMDLAKISDITEHAGLANGTFYNHFADKDEILTEAAQRVAVEMAREIDNEMRAVDSAVARMVTATTRAIRMAVSESAWGAVIIGALQHLPPVRGNILQFLRADLQLGVDQGMFDIELDEFFLDQIASLIIVSIRTQI 172
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: UPI000422497D (TetR/AcrR family transcriptional regulator n=1 Tax=Pseudonocardia spinosispora TaxID=103441 RepID=UPI000422497D) HSP 1 Score: 85.9 bits (211), Expect = 2.160e-17 Identity = 52/157 (33.12%), Postives = 87/157 (55.41%), Query Frame = 1 Query: 28 RDRTRRKLLDAGLEVMAERGEA-LTASDVVNAADVSNGTFYNHFLDREDFIQALALESL-EVITTGSADDTEGADPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVS 492 R+RTRR+LLDAG ++ ERG A L ++ ADV+ G+FYNHF +E+ ++A+ ESL ++ T S +DPA A++ R + A EP + + ++ L+ + + + A L G +GRF D T+ V + +A IR++++ Sbjct: 17 RERTRRRLLDAGRMLITERGVAGLRIQEITERADVALGSFYNHFSTKEELVEAVVTESLTDLAATASTPSAPDSDPAEAVAISCFRFIRLAYEEPDFAQLLVNLSSADALFDTTIHPYARAALERGIDSGRFVIPDLEVTLTAVISSALALIRQILA 173
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: A0A2J7TC88_METSI (HTH tetR-type domain-containing protein n=2 Tax=Methylocella silvestris TaxID=199596 RepID=A0A2J7TC88_METSI) HSP 1 Score: 85.1 bits (209), Expect = 7.380e-17 Identity = 67/189 (35.45%), Postives = 99/189 (52.38%), Query Frame = 1 Query: 28 RDRTRRKLLDAGLEVMAER-GEALTASDVVNAADVSNGTFYNHFLDREDFIQALALE-----SLEVITTGSADDTEGADPAWRFAVATTRVLEAATREPLWGRAILRLA---ECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVSPDAPAEAAGNDAIPTVVSRLLEAIG 567 R RTR+ LL AG ++ AE+ +++T +D+ A+V+ G+FYNHF+D+E F +A+ +LE+ S + DPA R A A VL A R P A+L LA PL+ GV AD+AEG R GRF D T V +V IM ++R ++S + +V + +L A+G Sbjct: 24 RQRTRKSLLSAGQKLFAEQPADSVTITDITEEAEVAKGSFYNHFVDKEAFAEAIYTAVHGELNLEIDAANSGEK----DPAARIARALCLVLRHAQRHPEKLSALLSLAGRRSADAPLNDGVT----ADVAEGLRVGRFNGLDTKTGVLIVLSLIMETVRCILSGGFHEKTPAPALAGSVATAMLRALG 204
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: A0A8I1TG41_9HYPH (Helix-turn-helix transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A8I1TG41_9HYPH) HSP 1 Score: 83.2 bits (204), Expect = 2.520e-16 Identity = 60/188 (31.91%), Postives = 93/188 (49.47%), Query Frame = 1 Query: 25 KRDRTRRKLLDAGLEVMAERGEA-LTASDVVNAADVSNGTFYNHFLDREDFIQALALESLEVITTGSADDTEGA-----DPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSGVRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVSPDAPAEAAGNDAIPTVVSRLLEAIGV 570 +R R R++L++AG +A G A T D + ADVS GTFYNHF RED ++AL E + D + A DPA R A T V+ A R+ G I+ ++ ++ ++ + DL G GRF + D + DLV GT+ +R ++S P D + ++ +L A+G+ Sbjct: 20 RRARMRQRLMEAGARAIAHHGMARATIDDFIAEADVSRGTFYNHFSMREDLLEAL----WERVGRDPFRDIQAACAIFADPAERLAAVTRSVMHRARRDATLGWLIVAMSADRRTVNEDLKAYPRPDLMLGRAAGRFAFDDLTSASDLVVGTVRTGLRALLSDTRPP-----DYVESLCKLILSALGM 198
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Match: UPI0010AAC13D (TetR/AcrR family transcriptional regulator n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010AAC13D) HSP 1 Score: 82.8 bits (203), Expect = 4.260e-16 Identity = 63/187 (33.69%), Postives = 98/187 (52.41%), Query Frame = 1 Query: 25 KRDRTRRKLLDAGLEVMAERGE-ALTASDVVNAADVSNGTFYNHFLDREDFIQALA---LESLEVITTGSADDTEGADPAWRFAVATTRVLEAATREPLWGRAILRLAECATPLHSG--VRQHLLADLAEGHRTGRFTYGDDPTTVDLVSGTIMASIRRMVSPDAPAEAAGNDAIPTVVSRLLEAIG 567 +R RTR ++ A +EV+AE+GE ++T D ++ A VS GTFYN+F + + A+A ++SL + D E AD R A RVLE A R+P W A+L P G +LLADL G G F+ DD + ++ G++M +R ++ + G + +VS++L A+G Sbjct: 17 RRARTRSAIIQAAIEVIAEKGEESVTTQDFMDRAGVSRGTFYNYFDAKTSVLSAIADDLMDSLNAQIIEESQDIENADE--RLAWILHRVLERADRDPTWANALLVAVWRNAPNIVGETTMGYLLADLNLGRDQGLFSVMDDTVSASIIFGSMMFGMRAVLD-----QQYGVEQRRQLVSQILVALG 196 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103257.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig103257.683.1 >prot_M-pyrifera_M_contig103257.683.1 ID=prot_M-pyrifera_M_contig103257.683.1|Name=mRNA_M-pyrifera_M_contig103257.683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp MNKPRPPKRDRTRRKLLDAGLEVMAERGEALTASDVVNAADVSNGTFYNHback to top mRNA from alignment at M-pyrifera_M_contig103257:84..653+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig103257.683.1 ID=mRNA_M-pyrifera_M_contig103257.683.1|Name=mRNA_M-pyrifera_M_contig103257.683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig103257:84..653+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig103257:84..653+ >mRNA_M-pyrifera_M_contig103257.683.1 ID=mRNA_M-pyrifera_M_contig103257.683.1|Name=mRNA_M-pyrifera_M_contig103257.683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig103257:84..653+ (Macrocystis pyrifera P11B4 male)back to top |