mRNA_M-pyrifera_M_contig103248.680.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103248.680.1
Unique NamemRNA_M-pyrifera_M_contig103248.680.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: A0A7S4IFK3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IFK3_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 1.240e-27
Identity = 51/111 (45.95%), Postives = 76/111 (68.47%), Query Frame = 1
Query:   13 SFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQFERIDYWMNQIRSSAATEKVSPI-ILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLGCIPVSCKTGLGM 342
            +F+AWDLGGQE++YP+HQ FL+S S++++VF+L  P+ +RIDYW+  +RS  +      I  LVGTH DS  CT  ++ ++   +  R+PR RFPG+     +SCKTG G+
Sbjct:  101 TFNAWDLGGQEIYYPSHQFFLTSNSVYILVFDLTAPKLDRIDYWLQLLRSLGSKGFSRTITFLVGTHLDSPKCTEEYIANMTQTLNNRFPRLRFPGLQPMHFISCKTGKGV 211          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: A0A7S4HXS1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HXS1_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 1.500e-27
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   16 FSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQFERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLGCIPVSCKTGLGMVDLK 354
            F+AWDLGGQEVFYPTHQ FL+S S++L+VFNL E    R++YWM  I+S +   + +PI +VGTHAD        +   +  VA ++    + G+     +SCK+G+G+V+LK
Sbjct:   47 FNAWDLGGQEVFYPTHQFFLTSNSVYLLVFNLLEMNSSRMEYWMRLIKSLSQNSRRAPIFIVGTHADHPSLENGVLDSRLQEVAVKFSTNSYRGLQTIHAISCKSGMGVVELK 159          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: L8GPH1_ACACA (Non-specific serine/threonine protein kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPH1_ACACA)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-21
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    7 AYSFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQFERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLGCIPVSCKTGLGM 342
            A   SAWD  GQE++Y THQ FLS +S+FLVVFNL  P   RI+YW+  +R++A   K SPI+++GTHA+   CT  ++ ++   +  ++ R ++P ++G   VS   G GM
Sbjct: 1188 AVDLSAWDFAGQEIYYATHQFFLSERSLFLVVFNLLSPVQSRIEYWLQSVRAAA---KGSPILIIGTHAEHERCTEEYLAEMQRRLEAKF-RYKYPNMVGIHFVSPVQGKGM 1295          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: A0A8J4PS68_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PS68_9MYCE)

HSP 1 Score: 94.7 bits (234), Expect = 3.150e-20
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 GPAYSFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQF-ERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRY---PRQRFPGVLGCIPVSCKTGLGMVDLK 354
            G    FSAWD GGQ+VFYPTHQ FL+S++++LVVF L +P F ER++YW+ Q++S      V  I LVGTH D  +CT   +++  A + + +    R + P    C    C TG G+ DLK
Sbjct:  417 GKKIEFSAWDFGGQQVFYPTHQFFLTSKALYLVVFKLTDPNFAERVEYWVRQVKS-ICEGGVPAIFLVGTHID--VCTPEQLSEAEAILRKSFVNMTRVKDPVTFVC----CSTGRGVKDLK 531          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: L8HCX9_ACACA (Non-specific serine/threonine protein kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCX9_ACACA)

HSP 1 Score: 94.7 bits (234), Expect = 3.200e-20
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   13 SFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQFE---RIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLGCIPVSCKTGLGMVDLK 354
            + SAWD  GQE++Y THQ FLS +S++L VF++++P  E   RI++W+  IR+ A   K + +I+VGTH D  +CT +++ ++  H    +   R+P + G   VSC TG G+  L+
Sbjct: 1085 TLSAWDFAGQEIYYSTHQFFLSERSLYLFVFDVSQPNMEQSSRIEFWLRSIRARA---KNASVIVVGTHIDEKICTNNYL-ELRRHYVEEFCASRYPNIRGITFVSCTTGKGLDVLQ 1197          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: L8GPG0_ACACA (Leucine-rich repeat and WD repeat-containing protein 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPG0_ACACA)

HSP 1 Score: 93.6 bits (231), Expect = 8.100e-20
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    4 PAYSFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQFERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLGCIPVSCKTGLGMVDL 351
            P    SAWD  GQE++Y THQ FLS +S+FLV+FNL      R++YW+  + ++A   K SPI++VGTH +S  CT   + +  + + ++  +Q++P V+G   VS  TG  M  L
Sbjct:  741 PHVELSAWDFAGQEIYYATHQFFLSERSLFLVLFNLTSIVQSRVEYWLQSVNAAA---KDSPILIVGTHVESEQCTEEFLANFKSRLEKKV-KQKYPNVVGIHFVSPVTGKNMDQL 852          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: L8GHP8_ACACA (Non-specific serine/threonine protein kinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GHP8_ACACA)

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-19
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    4 PAYSFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQFERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLG 306
            P    SAWD  GQE++Y THQ FLS +S+++VVFNL  P+   ++YW+  +R++      SPI+L+GTHA+   CT  ++  +   + ++Y   RFP +LG
Sbjct: 1287 PMMELSAWDFAGQEIYYSTHQFFLSERSLYVVVFNLLAPEQSHVEYWLRSVRTAGGN---SPILLIGTHAEDERCTDDYLNIMQQRLTKKYCA-RFPNILG 1383          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: A0A151ZFK2_9MYCE (Non-specific serine/threonine protein kinase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZFK2_9MYCE)

HSP 1 Score: 92.8 bits (229), Expect = 1.490e-19
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 1
Query:   16 FSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQF-ERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLGCIP-VSCKTGLGMVDLK 354
            F  WD GGQ+VFYPTHQ FL+S++++LVVF L +P F ER++YW+ Q++S      V  I +VGTH D  +CT   + +  A + R +  Q    V   I  V C TG G+ +LK
Sbjct:  426 FLGWDFGGQQVFYPTHQFFLTSRALYLVVFRLTDPNFAERVEYWVRQVKS-ICEGGVPAIFIVGTHID--VCTPEQIAEAEAILKRSFVNQTLTRVKDPITFVCCSTGKGVKELK 537          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: F0ZS49_DICPU (Non-specific serine/threonine protein kinase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZS49_DICPU)

HSP 1 Score: 92.4 bits (228), Expect = 2.030e-19
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1
Query:    1 GPAYSFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQF-ERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGVLGCIPVSCKTGLGMVDLK 354
            G    FSAWD GGQ+VFYPTHQ FL+SQ+++LVVF L +P F ER++YW+ Q++S  ++  V  I LVGTH D  +CT   + +  + +   + +           V C+TG G+ +LK
Sbjct:  419 GKKVDFSAWDFGGQQVFYPTHQFFLTSQALYLVVFKLTDPNFAERVNYWVRQVKS-CSSGAVPAIFLVGTHTD--VCTPEQLGEAESILKSNFLQYTRVKDNAINFVCCQTGKGIKELK 534          
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Match: UPI00064518B4 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064518B4)

HSP 1 Score: 89.7 bits (221), Expect = 1.770e-18
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   16 FSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQF-ERIDYWMNQIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRY---PRQRFPGVLGCIPVSCKTGLGMVDLK 354
            FSAWD GGQ+VFYPTHQ FL+S +++LVVFN+A+P + ER++YW+ QI+S         I  VGTH D  +CT   + +V   + + +    + + P    C    C TG G+ +LK
Sbjct:  439 FSAWDFGGQQVFYPTHQFFLTSSALYLVVFNVADPNWAERVEYWIRQIKSICDYGFKPSIFFVGTHID--VCTPEQLREVETIINKSFVSHSKSKNPVSFVC----CGTGKGIKELK 549          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103248.680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IFK3_9EUKA1.240e-2745.95Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4HXS1_9EUKA1.500e-2745.13Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8GPH1_ACACA1.420e-2142.86Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8J4PS68_9MYCE3.150e-2043.44Non-specific serine/threonine protein kinase n=1 T... [more]
L8HCX9_ACACA3.200e-2039.32Non-specific serine/threonine protein kinase n=1 T... [more]
L8GPG0_ACACA8.100e-2040.52Leucine-rich repeat and WD repeat-containing prote... [more]
L8GHP8_ACACA1.100e-1940.59Non-specific serine/threonine protein kinase n=1 T... [more]
A0A151ZFK2_9MYCE1.490e-1943.48Non-specific serine/threonine protein kinase n=1 T... [more]
F0ZS49_DICPU2.030e-1942.02Non-specific serine/threonine protein kinase n=1 T... [more]
UPI00064518B41.770e-1841.88hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103248contigM-pyrifera_M_contig103248:4..357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue3.9e-17
Seed eggNOG ortholog5786.XP_003290237.1
Preferred nameroco4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0030587,GO:0031150,GO:0031153,GO:0031154,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0065007,GO:0071704,GO:0090702,GO:0099120,GO:0140096,GO:1901564
EggNOG free text desc.C-terminal of Roc, COR, domain
EggNOG OGs3X9QB@554915,COG0515@1,KOG0192@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.094363-CDS-M-pyrifera_M_contig103248:3..3571622815537.094363-CDS-M-pyrifera_M_contig103248:3..357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103248 4..357 -
1692277454.1085892-CDS-M-pyrifera_M_contig103248:3..3571692277454.1085892-CDS-M-pyrifera_M_contig103248:3..357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103248 4..357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103248.680.1prot_M-pyrifera_M_contig103248.680.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103248 4..357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103248.680.1

>prot_M-pyrifera_M_contig103248.680.1 ID=prot_M-pyrifera_M_contig103248.680.1|Name=mRNA_M-pyrifera_M_contig103248.680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
GPAYSFSAWDLGGQEVFYPTHQLFLSSQSIFLVVFNLAEPQFERIDYWMN
QIRSSAATEKVSPIILVGTHADSSLCTASHVTDVMAHVARRYPRQRFPGV
LGCIPVSCKTGLGMVDLK
back to top

mRNA from alignment at M-pyrifera_M_contig103248:4..357-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103248.680.1 ID=mRNA_M-pyrifera_M_contig103248.680.1|Name=mRNA_M-pyrifera_M_contig103248.680.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig103248:4..357- (Macrocystis pyrifera P11B4 male)
GGACCTGCATATTCTTTCTCTGCCTGGGACCTCGGTGGCCAAGAGGTCTT TTATCCAACCCACCAGCTCTTCCTGTCGAGCCAGAGCATCTTCCTGGTGG TGTTCAACCTGGCTGAGCCGCAGTTCGAGCGCATTGACTACTGGATGAAC CAGATTCGCTCCTCTGCTGCCACTGAGAAGGTGTCGCCCATTATTTTGGT TGGGACGCATGCAGACAGCAGTCTCTGCACTGCCTCGCACGTGACTGATG TGATGGCCCATGTTGCGCGCCGCTACCCCAGGCAACGGTTTCCGGGAGTG CTGGGCTGCATTCCTGTGAGCTGCAAGACAGGATTGGGCATGGTTGATCT GAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig103248:4..357-

>mRNA_M-pyrifera_M_contig103248.680.1 ID=mRNA_M-pyrifera_M_contig103248.680.1|Name=mRNA_M-pyrifera_M_contig103248.680.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig103248:4..357- (Macrocystis pyrifera P11B4 male)
GGACCTGCATATTCTTTCTCTGCCTGGGACCTCGGTGGCCAAGAGGTCTT
TTATCCAACCCACCAGCTCTTCCTGTCGAGCCAGAGCATCTTCCTGGTGG
TGTTCAACCTGGCTGAGCCGCAGTTCGAGCGCATTGACTACTGGATGAAC
CAGATTCGCTCCTCTGCTGCCACTGAGAAGGTGTCGCCCATTATTTTGGT
TGGGACGCATGCAGACAGCAGTCTCTGCACTGCCTCGCACGTGACTGATG
TGATGGCCCATGTTGCGCGCCGCTACCCCAGGCAACGGTTTCCGGGAGTG
CTGGGCTGCATTCCTGTGAGCTGCAAGACAGGATTGGGCATGGTTGATCT
GAAGGGACCTGCATATTCTTTCTCTGCCTGGGACCTCGGTGGCCAAGAGG
TCTTTTATCCAACCCACCAGCTCTTCCTGTCGAGCCAGAGCATCTTCCTG
GTGGTGTTCAACCTGGCTGAGCCGCAGTTCGAGCGCATTGACTACTGGAT
GAACCAGATTCGCTCCTCTGCTGCCACTGAGAAGGTGTCGCCCATTATTT
TGGTTGGGACGCATGCAGACAGCAGTCTCTGCACTGCCTCGCACGTGACT
GATGTGATGGCCCATGTTGCGCGCCGCTACCCCAGGCAACGGTTTCCGGG
AGTGCTGGGCTGCATTCCTGTGAGCTGCAAGACAGGATTGGGCATGGTTG
ATCTGAAG
back to top