mRNA_M-pyrifera_M_contig103157.664.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103157.664.1
Unique NamemRNA_M-pyrifera_M_contig103157.664.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103157.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103157contigM-pyrifera_M_contig103157:186..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103157.664.1prot_M-pyrifera_M_contig103157.664.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103157 186..647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.072574-CDS-M-pyrifera_M_contig103157:185..2771622815536.072574-CDS-M-pyrifera_M_contig103157:185..277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103157 186..277 -
1692277453.6114771-CDS-M-pyrifera_M_contig103157:185..2771692277453.6114771-CDS-M-pyrifera_M_contig103157:185..277Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103157 186..277 -
1622815536.0874813-CDS-M-pyrifera_M_contig103157:424..6471622815536.0874813-CDS-M-pyrifera_M_contig103157:424..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103157 425..647 -
1692277453.6203747-CDS-M-pyrifera_M_contig103157:424..6471692277453.6203747-CDS-M-pyrifera_M_contig103157:424..647Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103157 425..647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.1005476-UTR-M-pyrifera_M_contig103157:647..6531622815536.1005476-UTR-M-pyrifera_M_contig103157:647..653Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103157 648..653 -
1692277453.6284618-UTR-M-pyrifera_M_contig103157:647..6531692277453.6284618-UTR-M-pyrifera_M_contig103157:647..653Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103157 648..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103157.664.1

>prot_M-pyrifera_M_contig103157.664.1 ID=prot_M-pyrifera_M_contig103157.664.1|Name=mRNA_M-pyrifera_M_contig103157.664.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MMMVPRSPQARLQAAYADIRTWDAKTWSARPRMSLAVSEYGRADLITEGA
TQGVLDKLRDTFAPAHEQLGEARNGVDRSILPENDSRTNVRPAARTSPPE
VEFLP
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mRNA from alignment at M-pyrifera_M_contig103157:186..653-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103157.664.1 ID=mRNA_M-pyrifera_M_contig103157.664.1|Name=mRNA_M-pyrifera_M_contig103157.664.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig103157:186..653- (Macrocystis pyrifera P11B4 male)
GAAGGGATGATGATGGTGCCGCGATCACCGCAGGCTCGCCTGCAAGCTGC
ATACGCTGACATCCGTACCTGGGATGCGAAGACTTGGTCTGCTCGACCGC
GGATGTCGTTGGCGGTCTCCGAGTATGGGAGGGCGGATTTGATTACAGAA
GGGGCGACGCAGGGGGTCCTCGACAAGCTGCGGGACACATTCGCTCCCGC
TCATGAGCAATTGGGCGAAGCACGCAACGGTTGGGAGCCGGCTGATCCTT
CCGAAATTCCCGCTCCCATTCCTGACAGCCAACGCATCGCGCCGGCACAA
GACCAGTCACCCGTTCGCAAGGGCTTCCTCCCGCTGGCGGATCTGTTCGG
ATTCGGTAGTGCGAAAACCGAACGAGGTGTCGATCGATCCATCCTGCCCG
AGAACGATTCTCGTACGAATGTCCGACCAGCTGCGAGAACCTCTCCACCG
GAAGTCGAGTTCCTGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103157:186..653-

>mRNA_M-pyrifera_M_contig103157.664.1 ID=mRNA_M-pyrifera_M_contig103157.664.1|Name=mRNA_M-pyrifera_M_contig103157.664.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig103157:186..653- (Macrocystis pyrifera P11B4 male)
ATGATGATGGTGCCGCGATCACCGCAGGCTCGCCTGCAAGCTGCATACGC
TGACATCCGTACCTGGGATGCGAAGACTTGGTCTGCTCGACCGCGGATGT
CGTTGGCGGTCTCCGAGTATGGGAGGGCGGATTTGATTACAGAAGGGGCG
ACGCAGGGGGTCCTCGACAAGCTGCGGGACACATTCGCTCCCGCTCATGA
GCAATTGGGCGAAGCACGCAACGATGATGATGGTGCCGCGATCACCGCAG
GCTCGCCTGCAAGCTGCATACGCTGACATCCGTACCTGGGATGCGAAGAC
TTGGTCTGCTCGACCGCGGATGTCGTTGGCGGTCTCCGAGTATGGGAGGG
CGGATTTGATTACAGAAGGGGCGACGCAGGGGGTCCTCGACAAGCTGCGG
GACACATTCGCTCCCGCTCATGAGCAATTGGGCGAAGCACGCAACGGTGT
CGATCGATCCATCCTGCCCGAGAACGATTCTCGTACGAATGTCCGACCAG
CTGCGAGAACCTCTCCACCGGAAGTCGAGTTCCTGCCAGTGTCGATCGAT
CCATCCTGCCCGAGAACGATTCTCGTACGAATGTCCGACCAGCTGCGAGA
ACCTCTCCACCGGAAGTCGAGTTCCTGCCA
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