mRNA_M-pyrifera_M_contig103155.662.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103155.662.1
Unique NamemRNA_M-pyrifera_M_contig103155.662.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A5A8DLP5_CAFRO (Cyclic nucleotide-binding domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DLP5_CAFRO)

HSP 1 Score: 181 bits (459), Expect = 1.870e-49
Identity = 86/166 (51.81%), Postives = 123/166 (74.10%), Query Frame = 1
Query:   10 ASSIARKRWRGSLSHALGLTRHQNMKSIDAYVREQSNIYQYSEYRKGGTDETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFPMHWFASTGGFNRLFR 507
            + S A   WR S+  A GL    + KS+DA ++EQSN+YQY++ R+G  D++LP  +IHP+G+ R++WDV +L LVVFFGF+VP+R+GFD+ LS  EE+FD+ ADI+F++D+  NFRTAY+DDGV+V+D   +   YL SWF +D VA+FP+ WF  TGG N++ R
Sbjct:  289 SKSRAANNWRASI--AAGLFARAD-KSMDALIKEQSNLYQYNDLRRGSLDDSLPCGVIHPDGTMRMTWDVAMLCLVVFFGFMVPYRLGFDITLSPAEESFDLVADILFLLDLASNFRTAYKDDGVMVSDGKAMAMNYLKSWFFIDLVASFPIGWFTDTGGVNKVIR 451          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A5A8DWU0_CAFRO (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DWU0_CAFRO)

HSP 1 Score: 181 bits (459), Expect = 1.990e-49
Identity = 86/166 (51.81%), Postives = 123/166 (74.10%), Query Frame = 1
Query:   10 ASSIARKRWRGSLSHALGLTRHQNMKSIDAYVREQSNIYQYSEYRKGGTDETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFPMHWFASTGGFNRLFR 507
            + S A   WR S+  A GL    + KS+DA ++EQSN+YQY++ R+G  D++LP  +IHP+G+ R++WDV +L LVVFFGF+VP+R+GFD+ LS  EE+FD+ ADI+F++D+  NFRTAY+DDGV+V+D   +   YL SWF +D VA+FP+ WF  TGG N++ R
Sbjct:  565 SKSRAANNWRASI--AAGLFARAD-KSMDALIKEQSNLYQYNDLRRGSLDDSLPCGVIHPDGTMRMTWDVAMLCLVVFFGFMVPYRLGFDITLSPAEESFDLVADILFLLDLASNFRTAYKDDGVMVSDGKAMAMNYLKSWFFIDLVASFPIGWFTDTGGVNKVIR 727          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A5A8DD93_CAFRO (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DD93_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 1.070e-32
Identity = 62/146 (42.47%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   85 KSIDAYVREQSNIYQYSEYRKGGTD---ETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFPMHWFASTGG--FNRLFR 507
            KS+DAY++   ++Y+Y++ R        E LP  +++P+G  + +WD++ L+LVV+F F+VPFRIGFD +L+  E+ FD  AD+IFIID+ ++FRTA++ DG+ V    ++   YL++WF +D +A+FP+ WF S      N+LFR
Sbjct:  103 KSVDAYIKGLVDLYEYAQTRIVDDRINMEKLPWHVVNPDGPLKTTWDIMTLVLVVYFAFMVPFRIGFDTELAPGEQTFDTIADVIFIIDVLLSFRTAFKQDGIWVFTTKRMAERYLTTWFLIDILASFPIGWFVSGAETKVNKLFR 248          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A812JMQ4_9DINO (CNGA3 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JMQ4_9DINO)

HSP 1 Score: 132 bits (333), Expect = 1.760e-32
Identity = 62/146 (42.47%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   85 KSIDAYVREQSNIYQYSEYRKGGTD---ETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFPMHWFASTGG--FNRLFR 507
            KS+DAY++   ++Y+Y++ R        E LP  +++P+G  + +WD++ L+LVV+F F+VPFRIGFD +L+  E+ FD  AD+IFIID+ ++FRTA++ DG+ V    ++   YL++WF +D +A+FP+ WF S      N+LFR
Sbjct:  189 KSVDAYIKGLVDLYEYAQTRIVDDRINMEKLPWHVVNPDGPLKTTWDIMTLVLVVYFAFMVPFRIGFDTELAPGEQTFDTIADVIFIIDVLLSFRTAFKQDGIWVFTTKRMAERYLTTWFLIDILASFPIGWFVSGAETKVNKLFR 334          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A7S2JNE4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JNE4_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 2.910e-16
Identity = 36/107 (33.64%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  178 IIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVK-LSKPEEAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFPMHWFASTGGFN 495
            ++ P+ +FR  WD + ++L+++    +P+++ F +  +       D   D+ F++DIFINFRTA   DG L+ +P  + + Y+  WF LD +++FP  W A  GG N
Sbjct:    2 MLMPDSNFRFVWDFISIVLILYVSIALPYQVSFLMDYIDVGVNVVDFLLDLFFLLDIFINFRTAVIVDGELIVNPKAVASRYIKRWFVLDLLSSFPFDW-AFGGGLN 107          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A7S3G236_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G236_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 2.330e-15
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  172 PLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGF----------------DVKLSKPEEAFDIFADII----FIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFPM 465
            P +I P  SFR +WD+LI++L+++   V+PFR+ F                +   +  E  F  FAD +    F+IDI +NFRTAY DDGVL+    KI   YL  WF +D ++T P+
Sbjct:  261 PFLIDPHSSFRTAWDILIMVLILWTSVVLPFRLAFVEDATFANQTIVNETQNASRTLIEIDFWFFADTVQDSLFLIDIILNFRTAYFDDGVLIVSLKKIGKKYLKGWFFIDLLSTIPL 378          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A7S1CB48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB48_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.840e-15
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   73 HQNM-KSIDAYVREQSNIYQYSEYRKGGTDETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRD-DGVLVTDPVKIRNAYLSSWFPLDFVATFPMHWFAS 480
            H+N+ + + A  R ++ ++Q S+     + +      IHP+  FR +WDVL+LL VV+  F +PF + F          FD   D+ FI+D+ +NF T + D D  LV D  +I + Y   WF +DFVA  P+  F S
Sbjct:   71 HENLLRKVGAAFRNET-VWQRSQGLDPRSRKRESAWFIHPDRQFRRTWDVLVLLFVVYNAFSLPFVLAFAPHQDAGWLIFDYLVDLFFIVDVAVNFNTGFTDQDKHLVRDRRRIASNYFRGWFAVDFVACIPLELFVS 207          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A1R2BHM5_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BHM5_9CILI)

HSP 1 Score: 83.2 bits (204), Expect = 2.880e-15
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 1
Query:  178 IIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFPMHW 471
            I+HPE   R SW++ I   ++F GF++P+   FD          +I + +IF IDI +   TAY D G ++ D +KI   YLS WF +D + TFP  W
Sbjct:   23 IMHPESLLRFSWEIFIATFLLFLGFLIPYLSAFDNNNINVNNVINIQSFVIFSIDIILTMNTAYYDKGYIIKDRLKIFRNYLSFWFWIDALTTFPFDW 120          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0A8J4CJV1_9CHLO (Ion_trans domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CJV1_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 3.160e-15
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  145 KGGTDETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRDD-GVLVTDPVKIRNAYLSSWFPLDFVATFPMHWFASTGG 489
            +G  ++  P  ++ P    R SWD+ +L LV++    VP    + +  S   +A D     +++IDI INFRTAY DD G LV D   + + YL++WFP+DF+AT P  +     G
Sbjct:   25 RGRLEDAFP--VLAPNTRGRTSWDIFVLTLVLYSAVTVPLAFSYGLPSSFVLDAVDWILTAVYVIDIGINFRTAYHDDDGNLVRDSWPVAHRYLATWFPIDFLATVPFDYIGKAAG 138          
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Match: A0CWB5_PARTE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CWB5_PARTE)

HSP 1 Score: 82.8 bits (203), Expect = 4.160e-15
Identity = 44/124 (35.48%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   91 IDAYVREQSNIYQYSEYRKGGTDETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPEEAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFVATFP 462
            I+ Y+ +  N+++  + +K  T   LPP II P+GS ++ WD+L L  V++    +PF+I F++++SK      +   ++F +DI +NF T    DG+L     KI   YLS WF +D ++TFP
Sbjct:   84 INHYLMQLGNLFK--KIKKNLTP--LPPYIITPDGSIKMIWDLLCLSFVIYEMISIPFQISFEIEISKEISMTSL---VVFALDILLNFNTGVYLDGILSMKREKIIRNYLSFWFWIDLISTFP 200          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103155.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DLP5_CAFRO1.870e-4951.81Cyclic nucleotide-binding domain-containing protei... [more]
A0A5A8DWU0_CAFRO1.990e-4951.81Cyclic nucleotide-binding domain-containing protei... [more]
A0A5A8DD93_CAFRO1.070e-3242.47Cyclic nucleotide-binding domain-containing protei... [more]
A0A812JMQ4_9DINO1.760e-3242.47CNGA3 protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A7S2JNE4_9EUKA2.910e-1633.64Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3G236_9EUKA2.330e-1538.14Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
A0A7S1CB48_9STRA2.840e-1534.78Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1R2BHM5_9CILI2.880e-1538.78Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A8J4CJV1_9CHLO3.160e-1536.21Ion_trans domain-containing protein (Fragment) n=1... [more]
A0CWB5_PARTE4.160e-1535.48Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103155contigM-pyrifera_M_contig103155:15..569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue3.1e-13
Seed eggNOG ortholog157072.XP_008875810.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.9920347-CDS-M-pyrifera_M_contig103155:14..5691622815535.9920347-CDS-M-pyrifera_M_contig103155:14..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103155 15..569 -
1692277453.5903728-CDS-M-pyrifera_M_contig103155:14..5691692277453.5903728-CDS-M-pyrifera_M_contig103155:14..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103155 15..569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103155.662.1prot_M-pyrifera_M_contig103155.662.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103155 15..569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103155.662.1

>prot_M-pyrifera_M_contig103155.662.1 ID=prot_M-pyrifera_M_contig103155.662.1|Name=mRNA_M-pyrifera_M_contig103155.662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
LKRASSIARKRWRGSLSHALGLTRHQNMKSIDAYVREQSNIYQYSEYRKG
GTDETLPPLIIHPEGSFRISWDVLILLLVVFFGFVVPFRIGFDVKLSKPE
EAFDIFADIIFIIDIFINFRTAYRDDGVLVTDPVKIRNAYLSSWFPLDFV
ATFPMHWFASTGGFNRLFRLIRLFKLFRMLRLLKL
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mRNA from alignment at M-pyrifera_M_contig103155:15..569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103155.662.1 ID=mRNA_M-pyrifera_M_contig103155.662.1|Name=mRNA_M-pyrifera_M_contig103155.662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig103155:15..569- (Macrocystis pyrifera P11B4 male)
TTGAAGCGTGCCTCTTCGATTGCTCGAAAAAGATGGCGTGGATCCTTGTC CCATGCATTAGGACTCACAAGACATCAAAATATGAAGTCGATTGATGCAT ATGTGAGGGAACAATCAAACATCTATCAATACTCGGAATATCGAAAAGGA GGAACAGACGAAACTTTGCCTCCACTCATTATTCATCCAGAAGGTTCCTT TCGCATCTCCTGGGATGTGCTCATCCTCTTACTGGTTGTTTTCTTTGGTT TCGTGGTTCCGTTTCGCATCGGCTTCGACGTTAAACTGAGCAAACCAGAG GAAGCATTTGACATTTTCGCTGACATCATTTTCATCATTGATATCTTTAT CAATTTCCGTACCGCATATCGAGATGATGGCGTTCTGGTAACAGATCCAG TCAAGATTCGGAACGCCTACCTCTCCTCATGGTTTCCTCTAGACTTTGTT GCCACGTTTCCGATGCATTGGTTTGCCAGCACCGGTGGATTCAATCGCCT TTTTCGATTGATTCGTTTGTTCAAGTTGTTTCGAATGCTTCGCCTTCTCA AACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103155:15..569-

>mRNA_M-pyrifera_M_contig103155.662.1 ID=mRNA_M-pyrifera_M_contig103155.662.1|Name=mRNA_M-pyrifera_M_contig103155.662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig103155:15..569- (Macrocystis pyrifera P11B4 male)
TTGAAGCGTGCCTCTTCGATTGCTCGAAAAAGATGGCGTGGATCCTTGTC
CCATGCATTAGGACTCACAAGACATCAAAATATGAAGTCGATTGATGCAT
ATGTGAGGGAACAATCAAACATCTATCAATACTCGGAATATCGAAAAGGA
GGAACAGACGAAACTTTGCCTCCACTCATTATTCATCCAGAAGGTTCCTT
TCGCATCTCCTGGGATGTGCTCATCCTCTTACTGGTTGTTTTCTTTGGTT
TCGTGGTTCCGTTTCGCATCGGCTTCGACGTTAAACTGAGCAAACCAGAG
GAAGCATTTGACATTTTCGCTGACATCATTTTCATCATTGATATCTTTAT
CAATTTCCGTACCGCATATCGAGATGATGGCGTTCTGGTAACAGATCCAG
TCAAGATTCGGAACGCCTACCTCTCCTCATGGTTTCCTCTAGACTTTGTT
GCCACGTTTCCGATGCATTGGTTTGCCAGCACCGGTGGATTCAATCGCCT
TTTTCGATTGATTCGTTTGTTCAAGTTGTTTCGAATGCTTCGCCTTCTCA
AACTCTTGAAGCGTGCCTCTTCGATTGCTCGAAAAAGATGGCGTGGATCC
TTGTCCCATGCATTAGGACTCACAAGACATCAAAATATGAAGTCGATTGA
TGCATATGTGAGGGAACAATCAAACATCTATCAATACTCGGAATATCGAA
AAGGAGGAACAGACGAAACTTTGCCTCCACTCATTATTCATCCAGAAGGT
TCCTTTCGCATCTCCTGGGATGTGCTCATCCTCTTACTGGTTGTTTTCTT
TGGTTTCGTGGTTCCGTTTCGCATCGGCTTCGACGTTAAACTGAGCAAAC
CAGAGGAAGCATTTGACATTTTCGCTGACATCATTTTCATCATTGATATC
TTTATCAATTTCCGTACCGCATATCGAGATGATGGCGTTCTGGTAACAGA
TCCAGTCAAGATTCGGAACGCCTACCTCTCCTCATGGTTTCCTCTAGACT
TTGTTGCCACGTTTCCGATGCATTGGTTTGCCAGCACCGGTGGATTCAAT
CGCCTTTTTCGATTGATTCGTTTGTTCAAGTTGTTTCGAATGCTTCGCCT
TCTCAAACTC
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