mRNA_M-pyrifera_M_contig103154.661.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103154.661.1
Unique NamemRNA_M-pyrifera_M_contig103154.661.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103154.661.1 vs. uniprot
Match: F2E4J9_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E4J9_HORVV)

HSP 1 Score: 63.5 bits (153), Expect = 8.370e-10
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:    1 LLQFDAASRLASLSSTLKCGNTSFYLETAQQIRTNIHTLKDPNSPLFLASDHIDALPDIWGSAYLAKLNLSTPQHRKGIAAFLATQWTL 267
            LL FDA+   A+L     CG    Y   A  +  ++ TL D  + LFL +D  +ALPD+WGSAYL  L LST   R+ +   LA+  TL
Sbjct:  204 LLLFDASVGAANLVRLTGCGKAEPYESMALGVALSVDTLFDAQTSLFLDADMANALPDVWGSAYLVSLGLSTRARRQQVMNTLASHRTL 292
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BLAST of mRNA_M-pyrifera_M_contig103154.661.1 vs. uniprot
Match: A0A7S2GF00_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GF00_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 5.270e-8
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:    1 LLQFDAASRLASLSSTLKCGNTSFYLETAQQIRTNIHTLKDPNSPLFLASDHIDALPDIWGSAYLAKLNLSTPQHRKGIAAFLATQ 258
            LL  D+  ++ + +    CG+   Y   A  +   +  L D   PL+ A+ H + LPD+WGSAYL  LNLSTP  R+   A L  Q
Sbjct:   19 LLYIDSCRQMGAAARRFGCGDAMRYEAEAAAVGAAVDDLYD--GPLWAAASHDNRLPDVWGSAYLVALNLSTPARREAAMAELEGQ 102
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103154.661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F2E4J9_HORVV8.370e-1041.57Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
A0A7S2GF00_9EUKA5.270e-837.21Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103154contigM-pyrifera_M_contig103154:147..413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815535.9452062-CDS-M-pyrifera_M_contig103154:146..4131622815535.9452062-CDS-M-pyrifera_M_contig103154:146..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103154 147..413 +
1692277453.578934-CDS-M-pyrifera_M_contig103154:146..4131692277453.578934-CDS-M-pyrifera_M_contig103154:146..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103154 147..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103154.661.1prot_M-pyrifera_M_contig103154.661.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103154 147..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103154.661.1

>prot_M-pyrifera_M_contig103154.661.1 ID=prot_M-pyrifera_M_contig103154.661.1|Name=mRNA_M-pyrifera_M_contig103154.661.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
LLQFDAASRLASLSSTLKCGNTSFYLETAQQIRTNIHTLKDPNSPLFLAS
DHIDALPDIWGSAYLAKLNLSTPQHRKGIAAFLATQWTL
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mRNA from alignment at M-pyrifera_M_contig103154:147..413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103154.661.1 ID=mRNA_M-pyrifera_M_contig103154.661.1|Name=mRNA_M-pyrifera_M_contig103154.661.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig103154:147..413+ (Macrocystis pyrifera P11B4 male)
CTGCTTCAGTTCGATGCTGCCTCGCGCCTCGCCTCCCTCTCCTCGACCCT
CAAGTGCGGAAACACCTCCTTCTACCTCGAAACCGCGCAACAAATCCGAA
CCAACATCCACACGCTCAAAGACCCAAACTCGCCGCTCTTCCTCGCGAGC
GACCACATCGACGCACTGCCGGACATCTGGGGATCCGCCTACCTCGCCAA
ACTCAACCTCTCCACCCCACAACACAGAAAAGGCATCGCAGCCTTCCTCG
CTACACAATGGACACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103154:147..413+

>mRNA_M-pyrifera_M_contig103154.661.1 ID=mRNA_M-pyrifera_M_contig103154.661.1|Name=mRNA_M-pyrifera_M_contig103154.661.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig103154:147..413+ (Macrocystis pyrifera P11B4 male)
CTGCTTCAGTTCGATGCTGCCTCGCGCCTCGCCTCCCTCTCCTCGACCCT
CAAGTGCGGAAACACCTCCTTCTACCTCGAAACCGCGCAACAAATCCGAA
CCAACATCCACACGCTCAAAGACCCAAACTCGCCGCTCTTCCTCGCGAGC
GACCACATCGACGCACTGCCGGACATCTGGGGATCCGCCTACCTCGCCAA
ACTCAACCTCTCCACCCCACAACACAGAAAAGGCATCGCAGCCTTCCTCG
CTACACAATGGACACTCCTGCTTCAGTTCGATGCTGCCTCGCGCCTCGCC
TCCCTCTCCTCGACCCTCAAGTGCGGAAACACCTCCTTCTACCTCGAAAC
CGCGCAACAAATCCGAACCAACATCCACACGCTCAAAGACCCAAACTCGC
CGCTCTTCCTCGCGAGCGACCACATCGACGCACTGCCGGACATCTGGGGA
TCCGCCTACCTCGCCAAACTCAACCTCTCCACCCCACAACACAGAAAAGG
CATCGCAGCCTTCCTCGCTACACAATGGACACTC
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