mRNA_M-pyrifera_M_contig102921.619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102921.619.1
Unique NamemRNA_M-pyrifera_M_contig102921.619.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102921.619.1 vs. uniprot
Match: UPI0011799E5E (caspase family protein n=1 Tax=Rhizobium arenae TaxID=1856850 RepID=UPI0011799E5E)

HSP 1 Score: 55.1 bits (131), Expect = 7.240e-7
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:   10 FKTAAAEGHVGGTYRFGLHCRDGIGMDVDKKEAVRLFRTAADEGSADASWALGHCYKEGYGGLKKDKKQAVYYFEAAA 243
            F  AA  G    T+        GIG+  D  EA+RL+RT+AD G ADA   LG  + +G  GL +D ++A+  F+ AA
Sbjct:  369 FSDAAKAGDAEATFELAKLYERGIGVQQDLAEALRLYRTSADMGFADAINDLGFFHYQGIQGLPRDPQKAIQLFQRAA 446
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BLAST of mRNA_M-pyrifera_M_contig102921.619.1 vs. uniprot
Match: A0A7S2PUQ6_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PUQ6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.130e-7
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   94 DKKEAVRLFRTAADEGSADASWALGHCYKEGYGGLKKDKKQAVYYFEAAAAAGH 255
            D K A   +  AA  G A A + L H YKEG GG++KDKK+ +Y+ E AA  GH
Sbjct:    4 DHKSAFEYWTKAAKLGDAVAHYELSHSYKEGKGGIEKDKKKELYHLEQAAIGGH 57
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BLAST of mRNA_M-pyrifera_M_contig102921.619.1 vs. uniprot
Match: A0A1B3WF13_9FIRM (Uncharacterized protein n=3 Tax=Dialister TaxID=39948 RepID=A0A1B3WF13_9FIRM)

HSP 1 Score: 53.1 bits (126), Expect = 3.360e-6
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    4 ASFKTAAAEGHVGGTYRFGLHCRDGIGMDVDKKEAVRLFRTAADEGSADASWALGHCYKEGYGGLKKDKKQAVYYFEAAAAAG 252
            A++K  +  G+    YR G H   GIG++ D KEAVRL+  A + G+A A+ ALG  Y   +    KD K+A   F+ AA AG
Sbjct:  167 AAYKEVSKLGYSEADYRLGFHYFQGIGVERDVKEAVRLWEKAWNLGNAAAANALGFVYS--FDEKLKDDKKAFECFDKAAKAG 247
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BLAST of mRNA_M-pyrifera_M_contig102921.619.1 vs. uniprot
Match: UPI000F80A7D4 (sel1 repeat family protein n=5 Tax=Burkholderia gladioli TaxID=28095 RepID=UPI000F80A7D4)

HSP 1 Score: 51.6 bits (122), Expect = 1.140e-5
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   82 GMDVDKKEAVRLFRTAADEGSADASWALGHCYKEGYGGLKKDKKQAVYYFEAAAAAGH 255
            G+  D   A  +F  A+  G A+A   +G CY++G+G +  D +QA+ +FEAAAAAGH
Sbjct:   55 GVKPDPSAAFHMFNAASTSGDAEALNMVGRCYEQGWG-VDVDTRQAIAFFEAAAAAGH 111
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BLAST of mRNA_M-pyrifera_M_contig102921.619.1 vs. uniprot
Match: A0A3N9EX59_9BURK (Sel1 repeat family protein n=2 Tax=Burkholderia cenocepacia TaxID=95486 RepID=A0A3N9EX59_9BURK)

HSP 1 Score: 51.2 bits (121), Expect = 1.540e-5
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  106 AVRLFRTAADEGSADASWALGHCYKEGYGGLKKDKKQAVYYFEAAAAAGH 255
            A R+F+ A+  G+A+A   +G CY++G+G +  D +QA+ +FEAAAAAGH
Sbjct:   63 AFRMFKAASTSGNAEALNMVGRCYEQGWG-VDVDARQAIAFFEAAAAAGH 111
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BLAST of mRNA_M-pyrifera_M_contig102921.619.1 vs. uniprot
Match: A0A812R0A1_SYMMI (PurD protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812R0A1_SYMMI)

HSP 1 Score: 51.2 bits (121), Expect = 1.720e-5
Identity = 29/79 (36.71%), Postives = 39/79 (49.37%), Query Frame = 1 
Query:   19 AAAEGHVGGTYRFGLHCRDGIGMDVDKKEAVRLFRTAADEGSADASWALGHCYKEGYGGLKKDKKQAVYYFEAAAAAGH 255
            A+ +GH  G  + G    DG G+ VDK EA R  R AAD G+ DA + L   Y+ G  G++ D   A   +      GH
Sbjct:  950 ASRQGHPAGMAQLGRSFADGAGVPVDKAEACRWLRLAADAGNRDAMYGLALAYRHG-DGVEVDLSMATELYRQGGNLGH 1027
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102921.619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0011799E5E7.240e-739.74caspase family protein n=1 Tax=Rhizobium arenae Ta... [more]
A0A7S2PUQ6_9STRA8.130e-748.15Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A1B3WF13_9FIRM3.360e-640.96Uncharacterized protein n=3 Tax=Dialister TaxID=39... [more]
UPI000F80A7D41.140e-543.10sel1 repeat family protein n=5 Tax=Burkholderia gl... [more]
A0A3N9EX59_9BURK1.540e-548.00Sel1 repeat family protein n=2 Tax=Burkholderia ce... [more]
A0A812R0A1_SYMMI1.720e-536.71PurD protein n=3 Tax=Symbiodinium TaxID=2949 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102921contigM-pyrifera_M_contig102921:397..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.8363013-CDS-M-pyrifera_M_contig102921:396..6511622815533.8363013-CDS-M-pyrifera_M_contig102921:396..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102921 397..651 -
1692277452.843732-CDS-M-pyrifera_M_contig102921:396..6511692277452.843732-CDS-M-pyrifera_M_contig102921:396..651Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102921 397..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102921.619.1prot_M-pyrifera_M_contig102921.619.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102921 397..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102921.619.1

>prot_M-pyrifera_M_contig102921.619.1 ID=prot_M-pyrifera_M_contig102921.619.1|Name=mRNA_M-pyrifera_M_contig102921.619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
AASFKTAAAEGHVGGTYRFGLHCRDGIGMDVDKKEAVRLFRTAADEGSAD
ASWALGHCYKEGYGGLKKDKKQAVYYFEAAAAAGH
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mRNA from alignment at M-pyrifera_M_contig102921:397..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102921.619.1 ID=mRNA_M-pyrifera_M_contig102921.619.1|Name=mRNA_M-pyrifera_M_contig102921.619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig102921:397..651- (Macrocystis pyrifera P11B4 male)
GCTGCCTCCTTCAAGACGGCCGCTGCTGAGGGCCATGTGGGTGGCACCTA
CCGATTTGGTCTGCACTGCCGGGACGGCATTGGCATGGACGTAGACAAGA
AGGAGGCAGTGAGGCTCTTCAGGACTGCCGCAGACGAAGGTAGCGCCGAT
GCTTCGTGGGCGCTGGGCCACTGCTACAAGGAAGGCTATGGCGGCCTGAA
GAAGGACAAGAAGCAGGCAGTCTACTACTTCGAGGCTGCTGCCGCCGCTG
GCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102921:397..651-

>mRNA_M-pyrifera_M_contig102921.619.1 ID=mRNA_M-pyrifera_M_contig102921.619.1|Name=mRNA_M-pyrifera_M_contig102921.619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig102921:397..651- (Macrocystis pyrifera P11B4 male)
GCTGCCTCCTTCAAGACGGCCGCTGCTGAGGGCCATGTGGGTGGCACCTA
CCGATTTGGTCTGCACTGCCGGGACGGCATTGGCATGGACGTAGACAAGA
AGGAGGCAGTGAGGCTCTTCAGGACTGCCGCAGACGAAGGTAGCGCCGAT
GCTTCGTGGGCGCTGGGCCACTGCTACAAGGAAGGCTATGGCGGCCTGAA
GAAGGACAAGAAGCAGGCAGTCTACTACTTCGAGGCTGCTGCCGCCGCTG
GCCACGCTGCCTCCTTCAAGACGGCCGCTGCTGAGGGCCATGTGGGTGGC
ACCTACCGATTTGGTCTGCACTGCCGGGACGGCATTGGCATGGACGTAGA
CAAGAAGGAGGCAGTGAGGCTCTTCAGGACTGCCGCAGACGAAGGTAGCG
CCGATGCTTCGTGGGCGCTGGGCCACTGCTACAAGGAAGGCTATGGCGGC
CTGAAGAAGGACAAGAAGCAGGCAGTCTACTACTTCGAGGCTGCTGCCGC
CGCTGGCCAC
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