mRNA_M-pyrifera_M_contig102920.618.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102920.618.1
Unique NamemRNA_M-pyrifera_M_contig102920.618.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A383WD89_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WD89_TETOB)

HSP 1 Score: 59.3 bits (142), Expect = 1.240e-8
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLLARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRLVHSLTLCA 198
            GLSEP+GAL A++VLR ++ A    +D  L  VGGVM AV  LELWPE R   Q  R++  + L A
Sbjct:  296 GLSEPIGALFALFVLRPFV-ASLERLDYVLAAVGGVMLAVCGLELWPEARKCKQDVRMLQGVLLGA 360          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A7J7QSC3_9CHLO (Zinc permease family n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QSC3_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 4.590e-8
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLLARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRLVHSLTL 192
            GLSEP+GAL A++VLR ++++   L D  L  VGGVM  V  LELWPE R   Q  R+   + L
Sbjct:  190 GLSEPIGALFALFVLRPFVVSLERL-DYVLAAVGGVMLGVCGLELWPEARRCRQDVRMAQGMLL 252          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A383WPF5_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPF5_TETOB)

HSP 1 Score: 55.5 bits (132), Expect = 2.930e-7
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLLARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRLVHSLTL 192
            GLSEP+GALLA+ V + ++ + A L    L   GGVM AV VLELWPE R   Q  RL   + L
Sbjct:  397 GLSEPVGALLALLVFKPFVTSLAQL-GYVLAATGGVMLAVCVLELWPEGRRCGQDGRLWQGIAL 459          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A2P6V7Z2_9CHLO (Pyruvate kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V7Z2_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 3.000e-7
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLL-ARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRLVHSLTL 192
            GLSEPLGALLA+ +++ +L  AR H +   L  VGG+M AVSVLELWPE R      R+   + L
Sbjct:  287 GLSEPLGALLALLLVKPFLTEARLHYI---LGFVGGLMAAVSVLELWPEARKCRHDRRMYTGIAL 348          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A7S3LMR0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LMR0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.610e-7
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLLARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRLV 177
            GLSEPLGAL+A+ +LR        L+D  L  V GVMTAVS LEL PE R + +P  ++
Sbjct:  201 GLSEPLGALVALTLLRPLFREYPWLVDYVLVFVAGVMTAVSFLELLPEARQYRKPKSVI 259          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: E1ZEX3_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZEX3_CHLVA)

HSP 1 Score: 51.6 bits (122), Expect = 1.930e-6
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLL-ARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRLVHSLTLCATL 204
            GLSEP+GALLA+ +++ +L  AR H +   L  VGG+M AVS+LELWPE +      R+   + +   L
Sbjct:   73 GLSEPVGALLALLLVKPFLTEARLHYI---LGFVGGLMAAVSLLELWPEAKRCHHDRRMAWGIAVGVVL 138          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A090M8P7_OSTTA (Zinc/iron permease n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M8P7_OSTTA)

HSP 1 Score: 52.0 bits (123), Expect = 4.330e-6
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLL-ARA-HLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRLVHSLTL 192
            GLSEP+GAL+A+  ++ YL  AR  HL+ A     GG+M AVSVLELWPE +  +  D +   + +
Sbjct:  203 GLSEPIGALVALKFMKPYLTPARLEHLLAA----TGGIMIAVSVLELWPEAKKCANNDSMYRGILI 264          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A059LRG3_9CHLO (Pyruvate kinase n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LRG3_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 9.380e-6
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLL-ARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRL 174
            GLSEP+GAL A+  +R ++  A  H     L VVGGVM AV VLELWPE R      RL
Sbjct:  242 GLSEPIGALCALLFIRPWVSPATVH---GALGVVGGVMAAVCVLELWPEARKCRSDRRL 297          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A2P6TI93_CHLSO (Pyruvate kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TI93_CHLSO)

HSP 1 Score: 51.2 bits (121), Expect = 9.390e-6
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYLL-ARAHLMDAGLCVVGGVMTAVSVLELWPEVRAHSQPDRL 174
            GLSEPLGALLA+ +++ +L   R H +   L  VGG+M AVS+LELWPE +      R+
Sbjct:  281 GLSEPLGALLALLLVKPFLTETRLHYI---LGFVGGLMAAVSLLELWPEAKRCRNDQRM 336          
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Match: A0A835XLB9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLB9_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 1.250e-5
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 GLSEPLGALLAVYVLRDYL-LARAHLMDAGLCVVGGVMTAVSVLELWPEVR 150
            GLSEPLGALL++ +LR +  L R H +   L  VGGVM AV  +ELWPE R
Sbjct:  343 GLSEPLGALLSLVLLRPFFSLERLHYL---LAFVGGVMLAVCAIELWPEGR 390          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102920.618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A383WD89_TETOB1.240e-850.00Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7J7QSC3_9CHLO4.590e-848.44Zinc permease family n=1 Tax=Scenedesmus sp. NREL ... [more]
A0A383WPF5_TETOB2.930e-750.00Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A2P6V7Z2_9CHLO3.000e-750.77Pyruvate kinase n=1 Tax=Micractinium conductrix Ta... [more]
A0A7S3LMR0_9STRA4.610e-750.85Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
E1ZEX3_CHLVA1.930e-643.48Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A090M8P7_OSTTA4.330e-645.45Zinc/iron permease n=2 Tax=Ostreococcus tauri TaxI... [more]
A0A059LRG3_9CHLO9.380e-652.54Pyruvate kinase n=1 Tax=Helicosporidium sp. ATCC 5... [more]
A0A2P6TI93_CHLSO9.390e-649.15Pyruvate kinase n=1 Tax=Chlorella sorokiniana TaxI... [more]
A0A835XLB9_9CHLO1.250e-556.86Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102920contigM-pyrifera_M_contig102920:428..637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.786621-CDS-M-pyrifera_M_contig102920:427..6371622815533.786621-CDS-M-pyrifera_M_contig102920:427..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102920 428..637 -
1692277452.8275738-CDS-M-pyrifera_M_contig102920:427..6371692277452.8275738-CDS-M-pyrifera_M_contig102920:427..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102920 428..637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102920.618.1prot_M-pyrifera_M_contig102920.618.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102920 428..637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102920.618.1

>prot_M-pyrifera_M_contig102920.618.1 ID=prot_M-pyrifera_M_contig102920.618.1|Name=mRNA_M-pyrifera_M_contig102920.618.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
GLSEPLGALLAVYVLRDYLLARAHLMDAGLCVVGGVMTAVSVLELWPEVR
AHSQPDRLVHSLTLCATLRA
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mRNA from alignment at M-pyrifera_M_contig102920:428..637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102920.618.1 ID=mRNA_M-pyrifera_M_contig102920.618.1|Name=mRNA_M-pyrifera_M_contig102920.618.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig102920:428..637- (Macrocystis pyrifera P11B4 male)
GGTCTGTCGGAACCGCTTGGTGCGCTGCTGGCTGTGTACGTTCTACGTGA TTACCTGCTGGCACGGGCACACCTGATGGATGCTGGTCTGTGCGTGGTGG GCGGTGTCATGACGGCTGTCAGCGTGCTTGAGCTGTGGCCAGAGGTGCGT GCGCACTCGCAACCCGACAGACTCGTCCACTCTCTCACGCTGTGTGCCAC GCTGCGTGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102920:428..637-

>mRNA_M-pyrifera_M_contig102920.618.1 ID=mRNA_M-pyrifera_M_contig102920.618.1|Name=mRNA_M-pyrifera_M_contig102920.618.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig102920:428..637- (Macrocystis pyrifera P11B4 male)
GGTCTGTCGGAACCGCTTGGTGCGCTGCTGGCTGTGTACGTTCTACGTGA
TTACCTGCTGGCACGGGCACACCTGATGGATGCTGGTCTGTGCGTGGTGG
GCGGTGTCATGACGGCTGTCAGCGTGCTTGAGCTGTGGCCAGAGGTGCGT
GCGCACTCGCAACCCGACAGACTCGTCCACTCTCTCACGCTGTGTGCCAC
GCTGCGTGCTGGTCTGTCGGAACCGCTTGGTGCGCTGCTGGCTGTGTACG
TTCTACGTGATTACCTGCTGGCACGGGCACACCTGATGGATGCTGGTCTG
TGCGTGGTGGGCGGTGTCATGACGGCTGTCAGCGTGCTTGAGCTGTGGCC
AGAGGTGCGTGCGCACTCGCAACCCGACAGACTCGTCCACTCTCTCACGC
TGTGTGCCACGCTGCGTGCT
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