mRNA_M-pyrifera_M_contig102823.603.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102823.603.1
Unique NamemRNA_M-pyrifera_M_contig102823.603.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: A0A836CK09_9STRA (Phosphoribosyltransferase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK09_9STRA)

HSP 1 Score: 129 bits (325), Expect = 5.050e-34
Identity = 64/105 (60.95%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   61 RKSTWEAEERPDLDLSSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            R + W +++RP      M+IFSGNAN  LAK++A+ +G +LGK+TV RFADGEV+V V+ENVRG+DVY++QPTC P N++LVELLLM+S MRRASA+ IT V+PY
Sbjct:    5 RSAMWPSKDRPKS--GGMKIFSGNANPPLAKEIASYLGINLGKITVARFADGEVNVMVHENVRGKDVYLIQPTCMPVNENLVELLLMVSTMRRASARRITVVIPY 107          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: A0A067CHF0_SAPPC (Pribosyltran_N domain-containing protein n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHF0_SAPPC)

HSP 1 Score: 129 bits (324), Expect = 1.420e-33
Identity = 74/126 (58.73%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    1 ALGLGLGMGGVVGLE-EEKKRRKSTWEAEERPDLDLSSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            A+G+GLGMG V      E     ST    E+    ++ ++IFSGNAN  LA  VA LVG +LGK+TV RFADGEV+V V+ENVRG+DVY+VQPTC P N++L+ELLLM+S MRRASA+ ITAV+PY
Sbjct:   19 AMGVGLGMGLVTSNRPSELSSVPSTIIVPEKQPK-MNGLKIFSGNANSPLASKVAELVGVNLGKITVERFADGEVNVMVHENVRGKDVYIVQPTCVPVNENLMELLLMVSTMRRASARRITAVIPY 143          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: A0A2P4YCE1_9STRA (Ribose-phosphate pyrophosphoKinase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCE1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 7.230e-33
Identity = 60/91 (65.93%), Postives = 79/91 (86.81%), Query Frame = 1
Query:  103 LSSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            ++ ++IFSGNAN +LA +VA LVG  LGK+TV RFADGEV++ V+ENVRG+DVY+VQPTC P N++L+ELLLM+S MRR+SA+ ITAV+PY
Sbjct:   54 INGLKIFSGNANHELAANVAKLVGVQLGKITVERFADGEVNLMVHENVRGKDVYIVQPTCVPVNENLMELLLMVSTMRRSSARRITAVIPY 144          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: F0WLG3_9STRA (Ribosephosphate pyrophosphokinase putative n=2 Tax=Albugo TaxID=65356 RepID=F0WLG3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 8.080e-33
Identity = 60/91 (65.93%), Postives = 78/91 (85.71%), Query Frame = 1
Query:  103 LSSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            ++ ++IFSGNAN  LA++VA LVG +LGK+TV RF DGEV V V+ENVRG+DVY+VQPTC P N+HL+ELLLM+S MRR+SA+ ITA++PY
Sbjct:   98 INGLKIFSGNANTTLAENVAKLVGVELGKITVDRFVDGEVDVMVHENVRGKDVYIVQPTCVPVNEHLMELLLMVSTMRRSSARRITAIIPY 188          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: K3WAD7_GLOUD (Pribosyltran_N domain-containing protein n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WAD7_GLOUD)

HSP 1 Score: 127 bits (319), Expect = 8.830e-33
Identity = 61/91 (67.03%), Postives = 80/91 (87.91%), Query Frame = 1
Query:  103 LSSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            ++ ++IFSGNAN +LA +VA LVG +LGK+TV RFADGEV+V V+ENVRG+DVY+VQPTC P N++L+ELLLM+S MRR+SA+ ITAV+PY
Sbjct:   61 INGLKIFSGNANPELASNVAKLVGVELGKITVERFADGEVNVMVHENVRGKDVYIVQPTCVPVNENLMELLLMVSTMRRSSARRITAVIPY 151          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: A0A5A8D421_CAFRO (Pribosyltran_N domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8D421_CAFRO)

HSP 1 Score: 127 bits (319), Expect = 1.320e-32
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 1
Query:   82 EERPDLDLSSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPG-NDHLVELLLMISCMRRASAQTITAVMPY 375
            EE P+L  +SM IFSGNAN DLA  +A  VGK LG  TVGRF DGEVSV+V+ENVRG+D+Y++QPTCPP  N++LVELLLM++ MRRASA+ IT V+PY
Sbjct:   65 EESPEL--ASMAIFSGNANPDLAALIAEHVGKPLGSATVGRFPDGEVSVSVHENVRGKDIYIIQPTCPPHVNEYLVELLLMVTTMRRASAEKITVVVPY 161          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: A0A8K1FF57_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF57_PYTOL)

HSP 1 Score: 125 bits (314), Expect = 4.380e-32
Identity = 61/91 (67.03%), Postives = 79/91 (86.81%), Query Frame = 1
Query:  103 LSSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            ++ ++IFSGNAN +LA +VA+LVG  LG +TV RFADGEV+V V+ENVRG+DVY+VQPTC P N++L+ELLLM+S MRRASA+ ITAV+PY
Sbjct:   56 INGLKIFSGNANKELAGNVASLVGVPLGNITVERFADGEVNVMVHENVRGKDVYIVQPTCVPVNENLMELLLMVSTMRRASARRITAVIPY 146          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: A0A4D9D5B0_9STRA (Pribosyltran_N domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5B0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.780e-32
Identity = 59/90 (65.56%), Postives = 77/90 (85.56%), Query Frame = 1
Query:  106 SSMRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            S M++FSGNAN  LA ++A  +G +LGK+TV RFADGEV+V V+ENVRG+DVY+VQPTC P N++L+ELLLM+S MRR+SA+ ITAV+PY
Sbjct:   52 SGMKLFSGNANTRLAAEIAGQLGMNLGKITVSRFADGEVNVMVHENVRGKDVYIVQPTCSPVNENLMELLLMVSTMRRSSARRITAVIPY 141          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: H3GAR4_PHYRM (Pribosyltran_N domain-containing protein n=26 Tax=Peronosporaceae TaxID=4777 RepID=H3GAR4_PHYRM)

HSP 1 Score: 122 bits (307), Expect = 3.730e-31
Identity = 60/86 (69.77%), Postives = 76/86 (88.37%), Query Frame = 1
Query:  118 IFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            IFSGNAN +LA +VA LVG +LGK+TV RFADGEV++ V+ENVRG+DVY+VQPTC P N++L+ELLLM+S MRR+SA+ ITAV+PY
Sbjct:   48 IFSGNANHELAANVAKLVGVELGKITVERFADGEVNLMVHENVRGKDVYIVQPTCVPVNENLMELLLMVSTMRRSSARRITAVIPY 133          
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Match: D7FTL1_ECTSI (Pribosyltran_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL1_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.940e-31
Identity = 60/88 (68.18%), Postives = 76/88 (86.36%), Query Frame = 1
Query:  112 MRIFSGNANIDLAKDVAALVGKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLMISCMRRASAQTITAVMPY 375
            M+IFSGNAN  LAKD+AA +G +LG++ V RFADGEV+V V ENVRG+DVY++QPTC P N++LVELLLM+S MRR+SA+ ITAV+PY
Sbjct:  145 MKIFSGNANPALAKDIAAYLGINLGRVKVDRFADGEVNVMVKENVRGKDVYIIQPTCMPVNENLVELLLMVSTMRRSSARRITAVIPY 232          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102823.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CK09_9STRA5.050e-3460.95Phosphoribosyltransferase-like protein (Fragment) ... [more]
A0A067CHF0_SAPPC1.420e-3358.73Pribosyltran_N domain-containing protein n=9 Tax=S... [more]
A0A2P4YCE1_9STRA7.230e-3365.93Ribose-phosphate pyrophosphoKinase (Fragment) n=1 ... [more]
F0WLG3_9STRA8.080e-3365.93Ribosephosphate pyrophosphokinase putative n=2 Tax... [more]
K3WAD7_GLOUD8.830e-3367.03Pribosyltran_N domain-containing protein n=4 Tax=P... [more]
A0A5A8D421_CAFRO1.320e-3266.67Pribosyltran_N domain-containing protein n=4 Tax=S... [more]
A0A8K1FF57_PYTOL4.380e-3267.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9D5B0_9STRA7.780e-3265.56Pribosyltran_N domain-containing protein n=2 Tax=M... [more]
H3GAR4_PHYRM3.730e-3169.77Pribosyltran_N domain-containing protein n=26 Tax=... [more]
D7FTL1_ECTSI3.940e-3168.18Pribosyltran_N domain-containing protein n=2 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102823contigM-pyrifera_M_contig102823:221..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue2.5e-27
Seed eggNOG ortholog157072.XP_008862911.1
KEGG rclassRC00002,RC00078
KEGG koko:K00948,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR01049
KEGG Pathwayko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00005
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ribose phosphate diphosphokinase activity
EggNOG OGsCOG0462@1,KOG1448@2759
EC2.7.6.1
COG Functional cat.EF
BiGG ReactioniRC1080.CRv4_Au5_s8_g15040_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Exons1
Model size378
Cds size357
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.4039826-CDS-M-pyrifera_M_contig102823:220..5771622815532.4039826-CDS-M-pyrifera_M_contig102823:220..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102823 221..577 -
1692277452.2190104-CDS-M-pyrifera_M_contig102823:220..5771692277452.2190104-CDS-M-pyrifera_M_contig102823:220..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102823 221..577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.4205787-UTR-M-pyrifera_M_contig102823:577..5981622815532.4205787-UTR-M-pyrifera_M_contig102823:577..598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102823 578..598 -
1692277452.232567-UTR-M-pyrifera_M_contig102823:577..5981692277452.232567-UTR-M-pyrifera_M_contig102823:577..598Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102823 578..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102823.603.1prot_M-pyrifera_M_contig102823.603.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102823 221..577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102823.603.1

>prot_M-pyrifera_M_contig102823.603.1 ID=prot_M-pyrifera_M_contig102823.603.1|Name=mRNA_M-pyrifera_M_contig102823.603.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MGGVVGLEEEKKRRKSTWEAEERPDLDLSSMRIFSGNANIDLAKDVAALV
GKDLGKMTVGRFADGEVSVAVNENVRGRDVYVVQPTCPPGNDHLVELLLM
ISCMRRASAQTITAVMPY*
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mRNA from alignment at M-pyrifera_M_contig102823:221..598-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102823.603.1 ID=mRNA_M-pyrifera_M_contig102823.603.1|Name=mRNA_M-pyrifera_M_contig102823.603.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig102823:221..598- (Macrocystis pyrifera P11B4 male)
GCTCTGGGGTTGGGGTTGGGGATGGGTGGAGTGGTGGGCTTGGAGGAGGA GAAGAAGCGGAGAAAGTCGACGTGGGAGGCTGAAGAGCGCCCAGATCTAG ACCTGTCTTCGATGCGCATTTTTTCGGGCAATGCCAACATTGATCTTGCC AAGGATGTGGCTGCTCTCGTAGGAAAGGACTTGGGAAAGATGACCGTGGG GCGCTTTGCAGATGGAGAGGTCAGCGTCGCCGTCAACGAAAACGTCCGTG GGAGAGACGTCTACGTCGTGCAGCCTACCTGCCCCCCTGGCAACGATCAC CTCGTCGAACTCCTACTCATGATCTCCTGCATGCGCAGGGCCTCTGCACA AACCATCACAGCCGTCATGCCATACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102823:221..598-

>mRNA_M-pyrifera_M_contig102823.603.1 ID=mRNA_M-pyrifera_M_contig102823.603.1|Name=mRNA_M-pyrifera_M_contig102823.603.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig102823:221..598- (Macrocystis pyrifera P11B4 male)
ATGGGTGGAGTGGTGGGCTTGGAGGAGGAGAAGAAGCGGAGAAAGTCGAC
GTGGGAGGCTGAAGAGCGCCCAGATCTAGACCTGTCTTCGATGCGCATTT
TTTCGGGCAATGCCAACATTGATCTTGCCAAGGATGTGGCTGCTCTCGTA
GGAAAGGACTTGGGAAAGATGACCGTGGGGCGCTTTGCAGATGGAGAGGT
CAGCGTCGCCGTCAACGAAAACGTCCGTGGGAGAGACGTCTACGTCGTGC
AGCCTACCTGCCCCCCTGGCAACGATCACCTCGTCGAACTCCTACTCATG
ATCTCCTGCATGCGCAGGGCCTCTGCACAAACCATCACAGCCGTCATGCC
ATACTAGATGGGTGGAGTGGTGGGCTTGGAGGAGGAGAAGAAGCGGAGAA
AGTCGACGTGGGAGGCTGAAGAGCGCCCAGATCTAGACCTGTCTTCGATG
CGCATTTTTTCGGGCAATGCCAACATTGATCTTGCCAAGGATGTGGCTGC
TCTCGTAGGAAAGGACTTGGGAAAGATGACCGTGGGGCGCTTTGCAGATG
GAGAGGTCAGCGTCGCCGTCAACGAAAACGTCCGTGGGAGAGACGTCTAC
GTCGTGCAGCCTACCTGCCCCCCTGGCAACGATCACCTCGTCGAACTCCT
ACTCATGATCTCCTGCATGCGCAGGGCCTCTGCACAAACCATCACAGCCG
TCATGCCATACTAG
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