mRNA_M-pyrifera_M_contig102706.584.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102706.584.1
Unique NamemRNA_M-pyrifera_M_contig102706.584.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: A0A2P6TCE0_CHLSO (DDB1- and CUL4-associated factor 13 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCE0_CHLSO)

HSP 1 Score: 100 bits (249), Expect = 9.320e-23
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   22 RDVDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            R +DHH    +  +AG   E+WD  RS  +H+FSW  A +ITSVR+ P+EP +FA T +DRGI L+D R+  P+RK+ M    N IAWNP E  +F
Sbjct:  164 RAIDHHWDRPQFATAGAAVEIWDHERSEPVHSFSWG-ADTITSVRFNPAEPDVFATTGSDRGIALYDLRSNTPIRKLVMQTKTNAIAWNPMEAFNF 258          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: E1ZQG8_CHLVA (DDB1- and CUL4-associated factor 13 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQG8_CHLVA)

HSP 1 Score: 94.7 bits (234), Expect = 8.430e-21
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   22 RDVDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            R VDHH    +  +AG   EVWD  RS  +  FSW  A ++TSVR+ P+EP +FA   +DRG+ L+D R+  P+RK+ M    N +AWNP E  +F
Sbjct:  164 RSVDHHWGRAQFATAGAAVEVWDHERSEPVQTFSWG-ADTLTSVRFNPAEPDVFATAGSDRGVALYDLRSSTPIRKLVMQTRTNALAWNPMEAFNF 258          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: A0A482SJF6_9ARCH (Sof1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJF6_9ARCH)

HSP 1 Score: 92.4 bits (228), Expect = 7.850e-20
Identity = 40/94 (42.55%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   28 VDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            +DHH    +  ++G    +WD  R+  ++ + W  A S+  VR+ P+E  L A+T NDR + L+D R+ +P+RK+ M MNANK+AWNPREP++F
Sbjct:  163 IDHHWVDSQFATSGDVVSIWDGTRAQPINTYKWG-ADSVLCVRYNPAEACLLASTGNDRSVCLYDLRSSLPMRKMVMAMNANKVAWNPREPMNF 255          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: A0A7S0S4L6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4L6_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 1.920e-19
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   22 RDVDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            R +DHH       +AG   ++WD  RS  ++ F+W  + +ITS R+ P+EP +FA T +DRG++L+D R   PVRK+ M   +N +AWNP E  +F
Sbjct:  165 RGIDHHWCRNTFATAGSVVDIWDHTRSEPINTFTWG-SDTITSARFNPAEPDVFATTGSDRGLVLYDLRISTPVRKLIMQTRSNALAWNPMEAFNF 259          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: E2BL45_HARSA (DDB1- and CUL4-associated factor 13 n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BL45_HARSA)

HSP 1 Score: 77.0 bits (188), Expect = 2.490e-14
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   16 VVRDVDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            V+  + HH       + G K  +W+  R+  +  F W    S+  V++ P +  L AA T++R IIL+DTR   P+RK+TM + +NK+AWNP E + F
Sbjct:  153 VLTGISHHRDKPIFATCGEKCHIWEQTRNEPVRTFEWG-VDSLYDVKFNPVQSNLLAACTSERRIILYDTRDTGPLRKITMKLRSNKLAWNPMESMTF 249          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: A0A6P3Y5E9_DINQU (DDB1- and CUL4-associated factor 13 n=2 Tax=Ponerini TaxID=141711 RepID=A0A6P3Y5E9_DINQU)

HSP 1 Score: 77.0 bits (188), Expect = 2.490e-14
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   16 VVRDVDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            V+  + HH       + G K  +W+  R+  +  F WD   S+  +++ P +  L AA TN+R IIL+DTR + P+ ++TM + +NK+AWNP E + F
Sbjct:  154 VLTGITHHRDRPIFATCGEKCHIWEETRNEPVCTFEWD-VDSLYDIKFNPVQSNLLAACTNERRIILYDTRDKGPLTRITMKLRSNKLAWNPMESMSF 250          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: UPI001C9CBE4C (DDB1- and CUL4-associated factor 13 n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9CBE4C)

HSP 1 Score: 74.3 bits (181), Expect = 2.260e-13
Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   16 VVRDVDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            V+  + HH S     + G   ++W+  R+  +  F W    S+  V++ P +  L AA  ++R IIL+DTR   P+RKVT+ +  N++AWNP E   F
Sbjct:  158 VITGISHHRSANLFATCGELCQMWEESRNEPIRTFKWG-VDSLHDVKFNPVQTNLLAACASNRSIILYDTRDTGPLRKVTLKLRTNRLAWNPMEAFSF 254          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: A0A7S2A1T2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1T2_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 2.060e-12
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 WRSGGVVRDVDHHLSLERVVSAGVKAE-VWDWHRSAAL--HAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            WR+ G  + +DH  S +   +A   A  VW   RS+ +  H   W    ++   R+ PSE +L A  T DRG+ L DTRT   ++K  + M +N + WNP EP++F
Sbjct:  170 WRTPGSFKSIDHSRSEDLFATASDSAVCVWSPDRSSPVQSHEDLWGSDDTVNVARYNPSERSLLACCTADRGVGLFDTRTTSALKKTILAMRSNCLEWNPMEPMNF 275          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: A0A0H5R8Y5_9EUKA (Sof1 domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R8Y5_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 2.790e-12
Identity = 32/95 (33.68%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   28 VDHHLSLERV-VSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            +D H   + + V+ G + +VW   RS  LH+F W  A +++  R+   E  +  + ++DR + L+D R   P+RK+T+ M +N +AWNP E  +F
Sbjct:  167 IDAHWRDQSIAVTTGSQVDVWSLERSEPLHSFKWG-ADTVSCARYSRVECDVLGSCSSDRAVTLYDVRMRTPIRKITLQMQSNALAWNPMEAFNF 260          
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Match: A0A1R2BIC3_9CILI (DDB1- and CUL4-associated factor 13 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BIC3_9CILI)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-10
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   55 VVSAGVKAEVWDWHRSAALHAFSWDDASSITSVRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREPIHF 309
            V S     E+WD  RS  +  F    + ++   ++ PSE  L  A +NDRGI++ D+R+   V K+ +L+ +N IAWNPREP++F
Sbjct:  162 VTSGHDGVELWDLRRSNPISLFQ-AGSDTVHKAKFNPSEGHLLGALSNDRGILIIDSRSNSVVEKMKLLLKSNDIAWNPREPLNF 245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102706.584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2P6TCE0_CHLSO9.320e-2347.92DDB1- and CUL4-associated factor 13 n=1 Tax=Chlore... [more]
E1ZQG8_CHLVA8.430e-2144.79DDB1- and CUL4-associated factor 13 n=1 Tax=Chlore... [more]
A0A482SJF6_9ARCH7.850e-2042.55Sof1 domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S0S4L6_9CHLO1.920e-1941.67Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
E2BL45_HARSA2.490e-1436.73DDB1- and CUL4-associated factor 13 n=2 Tax=Harpeg... [more]
A0A6P3Y5E9_DINQU2.490e-1435.71DDB1- and CUL4-associated factor 13 n=2 Tax=Poneri... [more]
UPI001C9CBE4C2.260e-1334.69DDB1- and CUL4-associated factor 13 n=1 Tax=Ventur... [more]
A0A7S2A1T2_TRICV2.060e-1235.85Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0H5R8Y5_9EUKA2.790e-1233.68Sof1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1R2BIC3_9CILI1.170e-1038.82DDB1- and CUL4-associated factor 13 n=1 Tax=Stento... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102706contigM-pyrifera_M_contig102706:87..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue6.2e-19
Seed eggNOG ortholog112098.XP_008607236.1
Preferred nameDCAF13
KEGG koko:K11806
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030054,GO:0030331,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035257,GO:0035258,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051427,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG0268@1,KOG0268@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04121
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.247738-CDS-M-pyrifera_M_contig102706:86..3951622815531.247738-CDS-M-pyrifera_M_contig102706:86..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102706 87..395 +
1692277451.6375172-CDS-M-pyrifera_M_contig102706:86..3951692277451.6375172-CDS-M-pyrifera_M_contig102706:86..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102706 87..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102706.584.1prot_M-pyrifera_M_contig102706.584.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102706 87..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102706.584.1

>prot_M-pyrifera_M_contig102706.584.1 ID=prot_M-pyrifera_M_contig102706.584.1|Name=mRNA_M-pyrifera_M_contig102706.584.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
WRSGGVVRDVDHHLSLERVVSAGVKAEVWDWHRSAALHAFSWDDASSITS
VRWCPSEPTLFAATTNDRGIILHDTRTEVPVRKVTMLMNANKIAWNPREP
IHF
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mRNA from alignment at M-pyrifera_M_contig102706:87..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102706.584.1 ID=mRNA_M-pyrifera_M_contig102706.584.1|Name=mRNA_M-pyrifera_M_contig102706.584.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig102706:87..395+ (Macrocystis pyrifera P11B4 male)
TGGCGTAGTGGAGGGGTGGTTCGTGACGTGGACCACCACTTGTCGCTGGA GCGGGTGGTGAGTGCGGGGGTGAAGGCTGAGGTGTGGGATTGGCACAGAT CAGCTGCGTTGCATGCTTTCTCGTGGGACGATGCGAGCTCCATCACCTCC GTCAGATGGTGTCCGTCGGAACCCACGCTCTTCGCCGCCACCACCAACGA CAGAGGCATCATCCTCCACGACACCAGGACAGAAGTGCCAGTCAGGAAAG TCACCATGCTCATGAACGCAAACAAGATCGCATGGAACCCCAGGGAACCC ATCCACTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102706:87..395+

>mRNA_M-pyrifera_M_contig102706.584.1 ID=mRNA_M-pyrifera_M_contig102706.584.1|Name=mRNA_M-pyrifera_M_contig102706.584.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig102706:87..395+ (Macrocystis pyrifera P11B4 male)
TGGCGTAGTGGAGGGGTGGTTCGTGACGTGGACCACCACTTGTCGCTGGA
GCGGGTGGTGAGTGCGGGGGTGAAGGCTGAGGTGTGGGATTGGCACAGAT
CAGCTGCGTTGCATGCTTTCTCGTGGGACGATGCGAGCTCCATCACCTCC
GTCAGATGGTGTCCGTCGGAACCCACGCTCTTCGCCGCCACCACCAACGA
CAGAGGCATCATCCTCCACGACACCAGGACAGAAGTGCCAGTCAGGAAAG
TCACCATGCTCATGAACGCAAACAAGATCGCATGGAACCCCAGGGAACCC
ATCCACTTCTGGCGTAGTGGAGGGGTGGTTCGTGACGTGGACCACCACTT
GTCGCTGGAGCGGGTGGTGAGTGCGGGGGTGAAGGCTGAGGTGTGGGATT
GGCACAGATCAGCTGCGTTGCATGCTTTCTCGTGGGACGATGCGAGCTCC
ATCACCTCCGTCAGATGGTGTCCGTCGGAACCCACGCTCTTCGCCGCCAC
CACCAACGACAGAGGCATCATCCTCCACGACACCAGGACAGAAGTGCCAG
TCAGGAAAGTCACCATGCTCATGAACGCAAACAAGATCGCATGGAACCCC
AGGGAACCCATCCACTTC
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