mRNA_M-pyrifera_M_contig102703.583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102703.583.1
Unique NamemRNA_M-pyrifera_M_contig102703.583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102703.583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102703contigM-pyrifera_M_contig102703:46..396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.1972234-CDS-M-pyrifera_M_contig102703:45..3661622815531.1972234-CDS-M-pyrifera_M_contig102703:45..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102703 46..366 -
1692277451.6175163-CDS-M-pyrifera_M_contig102703:45..3661692277451.6175163-CDS-M-pyrifera_M_contig102703:45..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102703 46..366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.2088826-UTR-M-pyrifera_M_contig102703:366..3961622815531.2088826-UTR-M-pyrifera_M_contig102703:366..396Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102703 367..396 -
1692277451.6282947-UTR-M-pyrifera_M_contig102703:366..3961692277451.6282947-UTR-M-pyrifera_M_contig102703:366..396Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102703 367..396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102703.583.1prot_M-pyrifera_M_contig102703.583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102703 46..366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102703.583.1

>prot_M-pyrifera_M_contig102703.583.1 ID=prot_M-pyrifera_M_contig102703.583.1|Name=mRNA_M-pyrifera_M_contig102703.583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
MMWHGDGNATTSSFTSFNLAFAHNSFFPNNASYQYAHQWANRTEYPDFSL
HGSTAYTSVFPTTSSHCPQGEYAFNLYYDHLAHGWDGPPGPYGTEDLVFA
AELCVG*
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mRNA from alignment at M-pyrifera_M_contig102703:46..396-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102703.583.1 ID=mRNA_M-pyrifera_M_contig102703.583.1|Name=mRNA_M-pyrifera_M_contig102703.583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig102703:46..396- (Macrocystis pyrifera P11B4 male)
GTGTTTCTGATTGGTGGTCGACCAGGATTGATGATGTGGCATGGTGATGG
AAATGCCACCACATCATCGTTCACCTCCTTCAACCTTGCGTTTGCTCATA
ACTCATTCTTCCCCAACAATGCTTCTTACCAATATGCCCACCAGTGGGCA
AACAGAACTGAATATCCAGATTTCTCCTTGCATGGCTCAACAGCGTATAC
ATCTGTGTTTCCAACCACTTCTTCCCATTGCCCACAAGGTGAATACGCCT
TCAACCTCTACTACGACCACTTGGCCCATGGATGGGACGGCCCACCAGGT
CCATATGGAACTGAAGACCTCGTGTTTGCCGCAGAACTATGTGTGGGATG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102703:46..396-

>mRNA_M-pyrifera_M_contig102703.583.1 ID=mRNA_M-pyrifera_M_contig102703.583.1|Name=mRNA_M-pyrifera_M_contig102703.583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig102703:46..396- (Macrocystis pyrifera P11B4 male)
ATGATGTGGCATGGTGATGGAAATGCCACCACATCATCGTTCACCTCCTT
CAACCTTGCGTTTGCTCATAACTCATTCTTCCCCAACAATGCTTCTTACC
AATATGCCCACCAGTGGGCAAACAGAACTGAATATCCAGATTTCTCCTTG
CATGGCTCAACAGCGTATACATCTGTGTTTCCAACCACTTCTTCCCATTG
CCCACAAGGTGAATACGCCTTCAACCTCTACTACGACCACTTGGCCCATG
GATGGGACGGCCCACCAGGTCCATATGGAACTGAAGACCTCGTGTTTGCC
GCAGAACTATGTGTGGGATGAATGATGTGGCATGGTGATGGAAATGCCAC
CACATCATCGTTCACCTCCTTCAACCTTGCGTTTGCTCATAACTCATTCT
TCCCCAACAATGCTTCTTACCAATATGCCCACCAGTGGGCAAACAGAACT
GAATATCCAGATTTCTCCTTGCATGGCTCAACAGCGTATACATCTGTGTT
TCCAACCACTTCTTCCCATTGCCCACAAGGTGAATACGCCTTCAACCTCT
ACTACGACCACTTGGCCCATGGATGGGACGGCCCACCAGGTCCATATGGA
ACTGAAGACCTCGTGTTTGCCGCAGAACTATGTGTGGGATGA
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