mRNA_M-pyrifera_M_contig102666.575.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102666.575.1
Unique NamemRNA_M-pyrifera_M_contig102666.575.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A7S1C3X4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3X4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.290e-25
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYVSRFLVALWTAAHPPSREMLSRALPAGMLYYLDMPPLSSLERESL 312
            LF S  AA+   AA++MRT+V D  P +   +QDAAL +GVLLRH+H++L AP+PD R+VSR+LV LW   H PSRE+    LP  +L +LD+P L+  E+++L
Sbjct:  112 LFRSPCAAITEGAALLMRTIVRDADPAIAKRMQDAALSEGVLLRHVHSSLFAPSPDQRFVSRYLVELWATGHFPSRELFRHMLPTSLLLFLDVPALTEAEKQNL 215          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A8K1CDK0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDK0_PYTOL)

HSP 1 Score: 89.7 bits (221), Expect = 1.240e-18
Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYVSRFLVALWTAAHPPSREMLSRALPAGMLYYLDMPPLSSLERESL 312
            LF SR A    A  ++++T++++  P     ++DAAL +G++LRH + A+  P+ D R VSR+L++LW + HPPS+E+L+R +P G L YLD P  S+ E++ L
Sbjct:  704 LFQSRCATTVEACTLLLKTILEECEPSAAMRIRDAALAEGIVLRHFYQAIFDPSFDQRAVSRYLISLWMSHHPPSKELLARMIPRGFLPYLDEPMPSAAEQQEL 807          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A5D6YI80_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YI80_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.160e-15
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYVSRFLVALWTAAHPPSREMLSRALPAGMLYYLDMPPLSSLERESLFAME 324
            LF SR A    A  ++++  +++  P + T ++DAAL +G++LRH   ++  P+ D R VSR+L++LW + H P++ +LS+ LP G L +L  P +S+ E E L  +E
Sbjct:  674 LFQSRCATTVEACTLLLKATLEECDPAVATQIRDAALVEGIVLRHFFQSIFDPSFDQRCVSRYLISLWMSHHAPAKRLLSQMLPGGFLPFLSEPAVSASELEELDQLE 781          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: K3W7T5_GLOUD (RME-8_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W7T5_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 2.820e-15
Identity = 39/108 (36.11%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYVSRFLVALWTAAHPPSREMLSRALPAGMLYYLDMPPLSSLERESLFAME 324
            LF SR A    A  ++++  +++  P +   ++DAAL +G++LRH++ A+   + D R VSR+L++LW + H PS ++L+R +P G   +LD PP+S+ E E    +E
Sbjct:  690 LFQSRCATTVEACTLLLKATLEECDPAVAMQIRDAALVEGIVLRHVYQAIFDDSFDQRCVSRYLISLWMSHHTPSMQLLARIIPPGFFPFLDEPPVSAAELEEFDQIE 797          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A2D4BMF2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMF2_PYTIN)

HSP 1 Score: 78.6 bits (192), Expect = 1.020e-14
Identity = 39/108 (36.11%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYVSRFLVALWTAAHPPSREMLSRALPAGMLYYLDMPPLSSLERESLFAME 324
            LF SR A    A  ++++T +++  P + + ++DAAL +G++LRH + AL     D R VSR+L++LW + HP S+++L R +P G + +L +P  S+ E   L  +E
Sbjct:  639 LFQSRCATTVEACTLLLKTTLEECDPSMASQIRDAALAEGIVLRHFYQALFDTCYDQRAVSRYLISLWMSNHPASKDLLLRMIPRGFMTFLTIPAYSAAELAHLEQVE 746          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A662XDP1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XDP1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.020e-14
Identity = 42/112 (37.50%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYVSRFLVALWTAAHPPSREMLSRALPAGMLYYLDMPP--------LSSLERESL 312
            LF SR A    A  ++++T +++  P + ++++DAAL +G++LRH + +L   + D R VSR+LV+LW + H  S+++LSR +P+G  + L  PP        L  LERES+
Sbjct:  670 LFQSRCATTVEACTLLLKTTLEECDPVVASSIRDAALTEGIVLRHFYQSLFDESFDQRCVSRYLVSLWMSHHDGSKQLLSRMIPSGFFHLLKEPPGTPAQIEELDRLERESM 781          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A3G2LMW5_ACIOX (Heat shock protein n=13 Tax=Acipenseroidei TaxID=186622 RepID=A0A3G2LMW5_ACIOX)

HSP 1 Score: 75.5 bits (184), Expect = 1.220e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYV-----SRFLVALWTAAHPPSREMLSRALPAGMLYYLDMP 282
            LF     A+   A +VM+ ++++G  ++ T +QD AL +G L RHLH ++   + D R +     SR LV LWTA HP +  +L R LP G+L YLD P
Sbjct:  569 LFQHPSMAIVKGAGLVMKAIIEEGDKEIATKMQDLALSEGALPRHLHTSMFTISSDQRMLTNRQLSRHLVGLWTAEHPTALNLLKRILPTGLLAYLDSP 667          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A444U0E6_ACIRT (DnaJ-like subfamily C member 13 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444U0E6_ACIRT)

HSP 1 Score: 75.5 bits (184), Expect = 1.240e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYV-----SRFLVALWTAAHPPSREMLSRALPAGMLYYLDMP 282
            LF     A+   A +VM+ ++++G  ++ T +QD AL +G L RHLH ++   + D R +     SR LV LWTA HP +  +L R LP G+L YLD P
Sbjct:  586 LFQHPSMAIVKGAGLVMKAIIEEGDKEIATKMQDLALSEGALPRHLHTSMFTISSDQRMLTNRQLSRHLVGLWTAEHPTALNLLKRILPTGLLAYLDSP 684          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A8C2XK61_CYCLU (DnaJ heat shock protein family (Hsp40) member C13 n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2XK61_CYCLU)

HSP 1 Score: 73.6 bits (179), Expect = 5.800e-13
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYV-----SRFLVALWTAAHPPSREMLSRALPAGMLYYLDMP 282
            LF     A+   A +VM+ ++++G  ++ T +QD AL +G L RHLH +L   + D R +     SR LV LWTA +P +  +L R LP+G+L YLD P
Sbjct:  549 LFQHPSMAIVKGAGLVMKAIIEEGDKEIATKMQDLALSEGALPRHLHTSLFTISADQRMLTNRQLSRHLVGLWTAENPVALNLLKRILPSGLLAYLDSP 647          
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Match: A0A8C9XX30_SANLU (DnaJ heat shock protein family (Hsp40) member C13 n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9XX30_SANLU)

HSP 1 Score: 73.6 bits (179), Expect = 5.800e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAALHAPTPDARYV-----SRFLVALWTAAHPPSREMLSRALPAGMLYYLDMP 282
            LF     A+   A +VM+ ++++G  ++ T +QD AL +G L RHLH +L   + D R +     SR LV LWTA +P +  +L R LP G+L YLD P
Sbjct:  569 LFQHPSMAIVKGAGLVMKAIIEEGDKEIATKMQDLALSEGALPRHLHTSLFTISADQRMLTNRQLSRHLVGLWTAENPVAMNLLKRILPTGLLAYLDSP 667          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102666.575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C3X4_9STRA1.290e-2550.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8K1CDK0_PYTOL1.240e-1841.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6YI80_9STRA2.160e-1537.04Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3W7T5_GLOUD2.820e-1536.11RME-8_N domain-containing protein n=1 Tax=Globispo... [more]
A0A2D4BMF2_PYTIN1.020e-1436.11Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A662XDP1_9STRA1.020e-1437.50Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3G2LMW5_ACIOX1.220e-1340.40Heat shock protein n=13 Tax=Acipenseroidei TaxID=1... [more]
A0A444U0E6_ACIRT1.240e-1340.40DnaJ-like subfamily C member 13 n=1 Tax=Acipenser ... [more]
A0A8C2XK61_CYCLU5.800e-1340.40DnaJ heat shock protein family (Hsp40) member C13 ... [more]
A0A8C9XX30_SANLU5.800e-1340.40DnaJ heat shock protein family (Hsp40) member C13 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102666contigM-pyrifera_M_contig102666:5..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog36331.EPrPI00000018865
KEGG koko:K09533
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DnaJ (Hsp40) homolog, subfamily C, member 13. Source PGD
EggNOG OGs1MD65@121069,KOG1789@1,KOG1789@2759
COG Functional cat.OU
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko03110
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815530.719006-CDS-M-pyrifera_M_contig102666:4..3281622815530.719006-CDS-M-pyrifera_M_contig102666:4..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102666 5..328 -
1692277451.4006088-CDS-M-pyrifera_M_contig102666:4..3281692277451.4006088-CDS-M-pyrifera_M_contig102666:4..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102666 5..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102666.575.1prot_M-pyrifera_M_contig102666.575.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102666 5..328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102666.575.1

>prot_M-pyrifera_M_contig102666.575.1 ID=prot_M-pyrifera_M_contig102666.575.1|Name=mRNA_M-pyrifera_M_contig102666.575.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
LFTSRVAAVNGAAAVVMRTMVDDGGPQLRTAVQDAALEQGVLLRHLHAAL
HAPTPDARYVSRFLVALWTAAHPPSREMLSRALPAGMLYYLDMPPLSSLE
RESLFAME
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mRNA from alignment at M-pyrifera_M_contig102666:5..328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102666.575.1 ID=mRNA_M-pyrifera_M_contig102666.575.1|Name=mRNA_M-pyrifera_M_contig102666.575.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig102666:5..328- (Macrocystis pyrifera P11B4 male)
CTCTTCACCTCGCGCGTCGCCGCCGTGAACGGCGCGGCGGCGGTGGTGAT GCGAACCATGGTGGACGACGGCGGGCCGCAGCTGCGCACCGCGGTGCAGG ACGCGGCGCTGGAGCAGGGCGTGCTGCTGCGGCACCTGCACGCGGCGCTG CACGCGCCCACGCCGGACGCGCGGTACGTCTCCCGCTTCCTCGTTGCGCT GTGGACGGCGGCCCACCCGCCGTCGCGCGAGATGCTGTCGCGGGCGCTGC CGGCGGGAATGCTGTACTACCTGGACATGCCGCCGCTGTCGTCGCTGGAG CGGGAGAGCCTGTTCGCGATGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102666:5..328-

>mRNA_M-pyrifera_M_contig102666.575.1 ID=mRNA_M-pyrifera_M_contig102666.575.1|Name=mRNA_M-pyrifera_M_contig102666.575.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig102666:5..328- (Macrocystis pyrifera P11B4 male)
CTCTTCACCTCGCGCGTCGCCGCCGTGAACGGCGCGGCGGCGGTGGTGAT
GCGAACCATGGTGGACGACGGCGGGCCGCAGCTGCGCACCGCGGTGCAGG
ACGCGGCGCTGGAGCAGGGCGTGCTGCTGCGGCACCTGCACGCGGCGCTG
CACGCGCCCACGCCGGACGCGCGGTACGTCTCCCGCTTCCTCGTTGCGCT
GTGGACGGCGGCCCACCCGCCGTCGCGCGAGATGCTGTCGCGGGCGCTGC
CGGCGGGAATGCTGTACTACCTGGACATGCCGCCGCTGTCGTCGCTGGAG
CGGGAGAGCCTGTTCGCGATGGAGCTCTTCACCTCGCGCGTCGCCGCCGT
GAACGGCGCGGCGGCGGTGGTGATGCGAACCATGGTGGACGACGGCGGGC
CGCAGCTGCGCACCGCGGTGCAGGACGCGGCGCTGGAGCAGGGCGTGCTG
CTGCGGCACCTGCACGCGGCGCTGCACGCGCCCACGCCGGACGCGCGGTA
CGTCTCCCGCTTCCTCGTTGCGCTGTGGACGGCGGCCCACCCGCCGTCGC
GCGAGATGCTGTCGCGGGCGCTGCCGGCGGGAATGCTGTACTACCTGGAC
ATGCCGCCGCTGTCGTCGCTGGAGCGGGAGAGCCTGTTCGCGATGGAG
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