mRNA_M-pyrifera_M_contig102561.555.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102561.555.1
Unique NamemRNA_M-pyrifera_M_contig102561.555.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A7C7IWL5_9FLAO (HYR domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7C7IWL5_9FLAO)

HSP 1 Score: 90.1 bits (222), Expect = 7.740e-19
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   16 VEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            + D +G   SCT  VTV +  +P+AVCQ  T+ L A+G   +L +D+DGGSSDNC I T+SL  +TFT  DV   P  VT+T+ D SGNS+SC+A VT+
Sbjct: 2094 ITDDSGNTSSCTAIVTVSEAIDPIAVCQDITVQLDATGTVTILPADVDGGSSDNCGIDTLSLDTDTFTCADV--GPNMVTLTVFDTSGNSSSCMAIVTV 2190          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A2D7VQL0_9FLAO (Uncharacterized protein (Fragment) n=3 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D7VQL0_9FLAO)

HSP 1 Score: 88.6 bits (218), Expect = 2.690e-18
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 TQTGFVEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            T T  V DA+G   +CT  VTV D   P A+CQ  T+ L ASG A L+ SDIDGGS+DNC I  +S SQ  FT  D+   P  V +T+TD SGN++SC+A VT+
Sbjct: 2142 TVTLTVTDASGNTSTCTAMVTVEDVLPPTAICQDITLILDASGNASLIPSDIDGGSTDNCGIALLSASQTAFTCDDI--GPNDVILTITDDSGNTSSCIAIVTV 2243          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A2D8G0J2_9FLAO (Uncharacterized protein (Fragment) n=3 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A2D8G0J2_9FLAO)

HSP 1 Score: 88.2 bits (217), Expect = 3.610e-18
Identity = 51/97 (52.58%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   22 DAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            D  G   +C+ TVTV DT+ PVAVCQ  T+PL A+G A +  +D+DGGS DNCAI T+S+  +TF   DV   P  VT+T+TD  GN +SC+A VTI
Sbjct:  958 DVNGNSSTCSFTVTVTDTTPPVAVCQDITVPLDATGNATITVADVDGGSFDNCAIDTISIDIDTFDCSDV--GPNDVTLTVTDIYGNVSSCIAVVTI 1052          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A6H9K341_FLASP (HYR domain-containing protein n=1 Tax=Flavobacterium sp. TaxID=239 RepID=A0A6H9K341_FLASP)

HSP 1 Score: 87.4 bits (215), Expect = 6.560e-18
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1
Query:    1 TQTGFVEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            T T  V D+ G   +CT TVTV+DT+ P A+CQ  TI L  +G A +   D+D GS+DNCAI T+S S  TF   ++  +  +VT+T+TD SGNS+SCVA VT+
Sbjct:   77 TVTLTVTDSIGQTDTCTATVTVVDTTAPTALCQDITIQLDGNGNASITALDVDNGSADNCAIATLSASPNTFNCSNLGAN--SVTLTVTDTSGNSSSCVATVTV 178          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: UPI001BB69B2D (Tandem-95 repeat protein n=1 Tax=Cryomorphaceae bacterium TaxID=1898111 RepID=UPI001BB69B2D)

HSP 1 Score: 87.0 bits (214), Expect = 9.370e-18
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   16 VEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            V D  G    CT TVTV D  +P A+CQ  TI L ASG A +  SDID GS+DNCAIT+VSLSQ +F    V  +  +VT+T+TD +GN++ C+A VT+
Sbjct:    5 VTDENGNTDQCTATVTVEDNIDPTAICQDITIQLDASGNASISTSDIDNGSADNCAITSVSLSQTSFNCAHVGVN--SVTLTVTDSNGNTDQCIATVTV 101          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A0S8KJ66_9BACE (Uncharacterized protein (Fragment) n=2 Tax=unclassified Bacteroides TaxID=2646097 RepID=A0A0S8KJ66_9BACE)

HSP 1 Score: 85.9 bits (211), Expect = 2.300e-17
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 TQTGFVEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            T T  V D AGL    + TVTVLD + P+AVCQ  T+ L A+G A ++G+D+D GSSDNC I ++ +S   F   +V   P  VT+T+ D SGNSN+C + VT+
Sbjct:   12 TVTMTVTDVAGLTDVSSSTVTVLDVTPPIAVCQNITVQLDATGNATIIGADVDNGSSDNCGIVSMLVSPNAFDCTNV--GPNTVTLTVIDASGNSNTCTSIVTV 113          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A2S0HW07_9FLAO (Uncharacterized protein n=1 Tax=Pukyongia salina TaxID=2094025 RepID=A0A2S0HW07_9FLAO)

HSP 1 Score: 85.1 bits (209), Expect = 4.340e-17
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 TQTGFVEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            T T  V D+ G   +CT TVTV+DT+ P+ +CQ  TI L  +G A +   DID GSSDNC I ++S S  TF   ++  +  +VT+T+TD SGNS+SCVA VT+
Sbjct:   77 TVTLTVTDSIGQTDTCTATVTVVDTTAPMVLCQDITIQLDGNGNASITALDIDNGSSDNCTIASLSASPNTFNCSNLGAN--SVTLTVTDSSGNSSSCVATVTV 178          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A7Y2Z499_9FLAO (HYR domain-containing protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y2Z499_9FLAO)

HSP 1 Score: 85.1 bits (209), Expect = 4.410e-17
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   22 DAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            D++G    C+ T+TV D   PVAVCQ  TI L A+G A +  SDIDGGS+DNC I ++S SQ  F   DV   P  VT+T+TD +GN ++C+A VT+
Sbjct: 2065 DSSGNTAVCSFTITVTDNEPPVAVCQDITIQLDANGMASITASDIDGGSTDNCGIASISASQTDFDCSDV--GPNNVTLTVTDDNGNVSTCIAVVTV 2159          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A6G6GP63_9FLAO (HYR domain-containing protein n=1 Tax=Flavobacteriaceae bacterium RR4-40 TaxID=2744027 RepID=A0A6G6GP63_9FLAO)

HSP 1 Score: 84.7 bits (208), Expect = 5.950e-17
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   13 FVEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
             V D  G   SC   VTV+D  NP+A+CQ  T+ L A+G A +  +D+DGGSSDNC IT  +++ +TF    V   P  V +T+TD SGNS+SC A VTI
Sbjct: 1075 LVTDVNGNTNSCIAVVTVVDVENPLAICQDITVQLDATGTATVAAADLDGGSSDNCGITASTVNIDTFDCTMV--GPNTVVLTVTDGSGNSDSCTAVVTI 1172          
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Match: A0A6M2AWA5_9FLAO (HYR domain-containing protein n=4 Tax=Aequorivita TaxID=153265 RepID=A0A6M2AWA5_9FLAO)

HSP 1 Score: 84.3 bits (207), Expect = 8.070e-17
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   19 EDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGSDIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVAQVTI 312
            +D      +C+ +VT+ DT  P AVCQ  ++ L ASG A +  +D+DGGSSDNCAI T+S+S  +FT  D+  +   VT+T+TD SGN+++CVA VT+
Sbjct: 1029 DDGINPIETCSFSVTINDTEAPTAVCQNISVQLDASGNATITAADVDGGSSDNCAIDTLSISTSSFTCADIGTNN--VTLTVTDASGNTSTCVAVVTV 1124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102561.555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C7IWL5_9FLAO7.740e-1950.51HYR domain-containing protein n=1 Tax=Flavobacteri... [more]
A0A2D7VQL0_9FLAO2.690e-1850.96Uncharacterized protein (Fragment) n=3 Tax=Flavoba... [more]
A0A2D8G0J2_9FLAO3.610e-1852.58Uncharacterized protein (Fragment) n=3 Tax=Flavoba... [more]
A0A6H9K341_FLASP6.560e-1849.04HYR domain-containing protein n=1 Tax=Flavobacteri... [more]
UPI001BB69B2D9.370e-1851.52Tandem-95 repeat protein n=1 Tax=Cryomorphaceae ba... [more]
A0A0S8KJ66_9BACE2.300e-1747.12Uncharacterized protein (Fragment) n=2 Tax=unclass... [more]
A0A2S0HW07_9FLAO4.340e-1748.08Uncharacterized protein n=1 Tax=Pukyongia salina T... [more]
A0A7Y2Z499_9FLAO4.410e-1749.48HYR domain-containing protein n=1 Tax=Flavobacteri... [more]
A0A6G6GP63_9FLAO5.950e-1748.00HYR domain-containing protein n=1 Tax=Flavobacteri... [more]
A0A6M2AWA5_9FLAO8.070e-1746.94HYR domain-containing protein n=4 Tax=Aequorivita ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102561contigM-pyrifera_M_contig102561:231..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.3
Seed ortholog evalue3e-13
Seed eggNOG ortholog1197477.IA57_10175
Hectar predicted targeting categoryother localisation
EggNOG free text desc.HYR domain
EggNOG OGs1IKM0@117743,4PMIF@976,COG1345@1,COG1345@2,COG2866@1,COG2866@2,COG3391@1,COG3391@2,COG4935@1,COG4935@2
COG Functional cat.N
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.1952837-CDS-M-pyrifera_M_contig102561:230..5421622815529.1952837-CDS-M-pyrifera_M_contig102561:230..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102561 231..542 -
1692277450.6964326-CDS-M-pyrifera_M_contig102561:230..5421692277450.6964326-CDS-M-pyrifera_M_contig102561:230..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102561 231..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102561.555.1prot_M-pyrifera_M_contig102561.555.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102561 231..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102561.555.1

>prot_M-pyrifera_M_contig102561.555.1 ID=prot_M-pyrifera_M_contig102561.555.1|Name=mRNA_M-pyrifera_M_contig102561.555.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
TQTGFVEDAAGLRRSCTGTVTVLDTSNPVAVCQAATIPLAASGQARLLGS
DIDGGSSDNCAITTVSLSQETFTFVDVTRSPIAVTMTLTDQSGNSNSCVA
QVTI
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mRNA from alignment at M-pyrifera_M_contig102561:231..542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102561.555.1 ID=mRNA_M-pyrifera_M_contig102561.555.1|Name=mRNA_M-pyrifera_M_contig102561.555.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig102561:231..542- (Macrocystis pyrifera P11B4 male)
ACCCAAACAGGTTTTGTGGAAGATGCCGCAGGCCTCCGGCGGTCGTGCAC AGGCACAGTTACAGTGCTAGATACCAGCAACCCTGTCGCTGTGTGCCAGG CAGCTACTATTCCTCTCGCCGCTTCCGGACAGGCCCGGCTCCTAGGCTCG GACATCGACGGCGGTAGCTCCGACAACTGTGCAATTACCACAGTGAGCTT GTCTCAAGAGACGTTCACATTTGTAGACGTTACAAGATCTCCAATTGCGG TCACAATGACTCTCACTGACCAGAGTGGAAACTCCAATTCCTGCGTTGCC CAGGTCACCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102561:231..542-

>mRNA_M-pyrifera_M_contig102561.555.1 ID=mRNA_M-pyrifera_M_contig102561.555.1|Name=mRNA_M-pyrifera_M_contig102561.555.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig102561:231..542- (Macrocystis pyrifera P11B4 male)
ACCCAAACAGGTTTTGTGGAAGATGCCGCAGGCCTCCGGCGGTCGTGCAC
AGGCACAGTTACAGTGCTAGATACCAGCAACCCTGTCGCTGTGTGCCAGG
CAGCTACTATTCCTCTCGCCGCTTCCGGACAGGCCCGGCTCCTAGGCTCG
GACATCGACGGCGGTAGCTCCGACAACTGTGCAATTACCACAGTGAGCTT
GTCTCAAGAGACGTTCACATTTGTAGACGTTACAAGATCTCCAATTGCGG
TCACAATGACTCTCACTGACCAGAGTGGAAACTCCAATTCCTGCGTTGCC
CAGGTCACCATTACCCAAACAGGTTTTGTGGAAGATGCCGCAGGCCTCCG
GCGGTCGTGCACAGGCACAGTTACAGTGCTAGATACCAGCAACCCTGTCG
CTGTGTGCCAGGCAGCTACTATTCCTCTCGCCGCTTCCGGACAGGCCCGG
CTCCTAGGCTCGGACATCGACGGCGGTAGCTCCGACAACTGTGCAATTAC
CACAGTGAGCTTGTCTCAAGAGACGTTCACATTTGTAGACGTTACAAGAT
CTCCAATTGCGGTCACAATGACTCTCACTGACCAGAGTGGAAACTCCAAT
TCCTGCGTTGCCCAGGTCACCATT
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