mRNA_M-pyrifera_M_contig102556.554.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102556.554.1
Unique NamemRNA_M-pyrifera_M_contig102556.554.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: A0A3C1KR89_9GAMM (Cytochrome C peroxidase n=8 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KR89_9GAMM)

HSP 1 Score: 400 bits (1028), Expect = 2.540e-138
Identity = 208/219 (94.98%), Postives = 211/219 (96.35%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTGKQ 657
            NAVFNA+ F D RAADLAEQAK PVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGD+ ALTAQQKAGLGLF DKGCAACHT VNLG QHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTG+Q
Sbjct:  113 NAVFNAAQFWDGRAADLAEQAKGPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDAAALTAQQKAGLGLFMDKGCAACHTGVNLGGQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTGEQ 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: A0A2E7C0L0_9GAMM (Cytochrome C peroxidase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C0L0_9GAMM)

HSP 1 Score: 359 bits (921), Expect = 2.300e-122
Identity = 185/218 (84.86%), Postives = 197/218 (90.37%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTGK 654
            NAVFNA+ F D RAADLAEQAK PVQASVEMSSTP RVTATLNSMP YVERF+TAFP   +PVSF+NMALAIEAFETTLTTPGSAFD YL GD  AL+ +QK GL LF DKGCAACHT VN G QHYFPFGLIA+PGADILPVGDKGRFAVTRTA+DEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNA+E+ QITAFLESL+G+
Sbjct:   92 NAVFNAAQFWDGRAADLAEQAKGPVQASVEMSSTPERVTATLNSMPAYVERFRTAFPGEPDPVSFENMALAIEAFETTLTTPGSAFDQYLLGDDAALSDEQKNGLALFMDKGCAACHTGVNFGGQHYFPFGLIAKPGADILPVGDKGRFAVTRTATDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAQEIRQITAFLESLSGE 309
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: A0A5A9VZW3_9GAMM (Cytochrome-c peroxidase n=2 Tax=Nitrincola tapanii TaxID=1708751 RepID=A0A5A9VZW3_9GAMM)

HSP 1 Score: 322 bits (824), Expect = 1.790e-107
Identity = 162/217 (74.65%), Postives = 181/217 (83.41%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTG 651
            NAVFNA+ F D RAADLAEQAK PVQA VEMSSTP RV ATL SMP+YVERF  +FP   +PVSFDNMALAIEAFE TL TP S FD YL G ++A++ ++K GL LF DKGCAACH+ VN G Q+YFPFGL+ RPGADILPVGDKGRFAVT TASDEYVFRAAPLRN+ LTAPYFHSGAVW LEEAVA+MG +QLG ELN E+V +ITAFL +LTG
Sbjct:  107 NAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPERVVATLKSMPDYVERFTASFPGETDPVSFDNMALAIEAFEATLITPNSRFDQYLLGKADAMSNEEKEGLALFMDKGCAACHSGVNFGGQNYFPFGLVVRPGADILPVGDKGRFAVTNTASDEYVFRAAPLRNIELTAPYFHSGAVWDLEEAVAVMGTAQLGTELNEEQVKKITAFLRTLTG 323
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: A0A099PFM9_9GAMM (Cytochrome C peroxidase n=2 Tax=Nitrincola TaxID=267849 RepID=A0A099PFM9_9GAMM)

HSP 1 Score: 321 bits (822), Expect = 3.970e-107
Identity = 161/217 (74.19%), Postives = 183/217 (84.33%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTG 651
            NAVFNA+ F D RAADLAEQAK PVQA VEMSSTPARV  TLNSMPEY++RF+ +FP+ A+PV+FDNMA+AIEAFE TL TP S FD +LNG+ +AL A QK GL LF DKGCAACH+ VN G Q YFPFGLI RPGADILP GD+GRF VT+TA+D+YVFRAAPLRN+ LTAPYFHSGAVW LEEAVA+MG +QLGAELN  EV +ITAFL +LTG
Sbjct:  108 NAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPARVVDTLNSMPEYIDRFKASFPEEADPVTFDNMAVAIEAFEATLITPNSPFDLWLNGEDDALNADQKEGLALFMDKGCAACHSGVNFGGQGYFPFGLITRPGADILPEGDRGRFEVTQTATDDYVFRAAPLRNIELTAPYFHSGAVWGLEEAVAVMGVAQLGAELNDTEVQKITAFLRTLTG 324
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: W9UZM6_9GAMM (Cytochrome c551 peroxidase n=2 Tax=Nitrincola TaxID=267849 RepID=W9UZM6_9GAMM)

HSP 1 Score: 320 bits (821), Expect = 5.450e-107
Identity = 161/217 (74.19%), Postives = 179/217 (82.49%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTG 651
            NAVFNA+ F D RAADLAEQAK PVQA VEMSSTPARV ATLNSMPEY+ERF+ +FP  A+PV+FDNMA+AIEAFE TL TP + FD YL G  +ALT+ +K GL LF DKGCAACH  VN G Q YFPFGL+ RPGADILP GD+GR  VT TASDEYVFRAAPLRN+ LTAPYFHSGAVW LEEAVA+MG SQLG ELN E+V +ITAFL +LTG
Sbjct:  109 NAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPARVVATLNSMPEYIERFKASFPGEADPVTFDNMAVAIEAFEATLITPNARFDQYLGGADDALTSDEKEGLALFMDKGCAACHAGVNFGGQQYFPFGLVTRPGADILPPGDRGRVEVTNTASDEYVFRAAPLRNIELTAPYFHSGAVWDLEEAVAVMGTSQLGTELNDEQVQKITAFLRTLTG 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: A0A1I3SVH0_9GAMM (Cytochrome c peroxidase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1I3SVH0_9GAMM)

HSP 1 Score: 317 bits (811), Expect = 1.680e-105
Identity = 159/218 (72.94%), Postives = 180/218 (82.57%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTGK 654
            NAVFNA+ F D RAADLAEQAK PVQA VEMSSTPARV  TL SMPEY+ERF+ AFP + EPV+FDNMA AIEA+E TL TP + FD YL GD +AL  +QK GL LF D+GC ACH+ VNLG Q Y+PFGL++RPG +ILP GDKGRFAVT TASDEYVFRAAPLRN+ LTAPYFHSGAVWSLEEAVA+MG +QLG EL+ EEV  I AFL+SLTG+
Sbjct:  108 NAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPARVEETLKSMPEYIERFENAFPTSEEPVTFDNMATAIEAYEATLITPDAPFDRYLRGDEDALNDKQKEGLALFMDRGCTACHSGVNLGGQDYYPFGLVSRPGGEILPEGDKGRFAVTETASDEYVFRAAPLRNIELTAPYFHSGAVWSLEEAVAVMGTAQLGTELDDEEVQSIVAFLKSLTGE 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: N6W4H7_9GAMM (Cytochrome-c peroxidase n=1 Tax=Marinobacter nanhaiticus D15-8W TaxID=626887 RepID=N6W4H7_9GAMM)

HSP 1 Score: 314 bits (805), Expect = 8.650e-105
Identity = 160/217 (73.73%), Postives = 176/217 (81.11%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTG 651
            NAVFNA+ F D RA DLAEQAK PVQA VEMSSTP RV ATL SMPEYVERF+ AFPDAA+PV+FDNMALAIEAFE TL TP + FD ++ GD  AL  Q+K GL LF DKGCA CHT VN G Q YFPFGL+ RPG +ILP GDKGRFAVT+TASDEYVFRAAPLRN+ LTAPYFHSGAVWSLEEAV++MG +QLG EL   EV  I AFL +LTG
Sbjct:   93 NAVFNAAQFWDGRAPDLAEQAKGPVQAGVEMSSTPDRVVATLKSMPEYVERFEKAFPDAADPVTFDNMALAIEAFEATLITPHARFDQFIAGDETALDEQEKQGLALFMDKGCAGCHTGVNFGGQSYFPFGLVTRPGGEILPEGDKGRFAVTQTASDEYVFRAAPLRNIELTAPYFHSGAVWSLEEAVSVMGSAQLGTELTDTEVEAIVAFLRTLTG 309
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: A0A4R2KTD9_9GAMM (Cytochrome c peroxidase n=1 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4R2KTD9_9GAMM)

HSP 1 Score: 313 bits (803), Expect = 2.930e-104
Identity = 159/218 (72.94%), Postives = 180/218 (82.57%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTGK 654
            NAVFNA+ F D RAADLAEQAK PVQA VEM+STP RV ATLNSMP+YVERF+  FP  ++ V+FDNMA AIEAFE TL TPG++FD YL GD +AL   +K GL LF DKGCAACH   NLG Q Y+PFGL+ +PGADILPVGDKGRF VTRTASDEYVFRAAPLRN+ALTAPYFHSG VWSLE AVA+MG SQLG EL+ E+VS I AFL++LTG+
Sbjct:  108 NAVFNAAQFWDGRAADLAEQAKGPVQAGVEMNSTPERVVATLNSMPDYVERFREVFPGQSDSVTFDNMATAIEAFEATLITPGASFDRYLQGDEDALDDSEKKGLALFIDKGCAACHGGTNLGGQGYYPFGLVKKPGADILPVGDKGRFEVTRTASDEYVFRAAPLRNIALTAPYFHSGGVWSLEAAVAVMGTSQLGTELSEEDVSFIVAFLKTLTGE 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: A0A4P7XI97_9ALTE (Cytochrome C peroxidase n=1 Tax=Hydrocarboniclastica marina TaxID=2259620 RepID=A0A4P7XI97_9ALTE)

HSP 1 Score: 312 bits (800), Expect = 8.640e-104
Identity = 157/218 (72.02%), Postives = 177/218 (81.19%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTGK 654
            NAVFNA+ F D RAADLAEQAK PVQA VEMSSTPARV ATL SMP+YV RF+ +FP    PVSFDNMA AIEAFE TL TP + FD +L G  +AL  Q+K GL LF DKGCA CH  VN G Q+YFPFGL++RPGAD+LP GDKGRFAVT T SDEYVFRAAPLRN+ LTAPYFHSGAVWSLEEAV++MG +QLG ELN +EV+ I+AFL +LTGK
Sbjct:  109 NAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPARVEATLKSMPDYVRRFEASFPSEENPVSFDNMAAAIEAFEATLITPDAPFDQFLRGQDDALNQQEKEGLALFMDKGCAGCHGGVNFGGQNYFPFGLVSRPGADVLPPGDKGRFAVTDTVSDEYVFRAAPLRNIELTAPYFHSGAVWSLEEAVSLMGTAQLGTELNEKEVADISAFLRTLTGK 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Match: UPI0003448C4E (cytochrome-c peroxidase n=1 Tax=Halomonas jeotgali TaxID=553386 RepID=UPI0003448C4E)

HSP 1 Score: 312 bits (799), Expect = 1.110e-103
Identity = 158/218 (72.48%), Postives = 179/218 (82.11%), Query Frame = 1 
Query:    1 NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVERFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQQKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFAVTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAELNAEEVSQITAFLESLTGK 654
            NAVFNA+ F D RAADLAEQAK PVQA VEMSSTP RV ATL SMPEYVERF  AFPD   PVSFDNMA AIEA+E+TL TP + FD YL GD++AL  +QK GL LF DKGC++CH   N+G Q Y+PFGL+ RPG DILP GDKGRF+VT TASDEYVFRAAPLRNVALTAPYFHSGA+W+LEEAV++MG +QLGAEL  +EVS I AFL +LTG+
Sbjct:  108 NAVFNAAQFWDGRAADLAEQAKGPVQAGVEMSSTPERVEATLGSMPEYVERFGQAFPDKDSPVSFDNMATAIEAYESTLITPDAPFDNYLRGDTDALDDRQKRGLALFMDKGCSSCHAGTNVGGQDYYPFGLVTRPGGDILPSGDKGRFSVTETASDEYVFRAAPLRNVALTAPYFHSGAIWNLEEAVSVMGTAQLGAELADDEVSDIAAFLHTLTGE 325
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102556.554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C1KR89_9GAMM2.540e-13894.98Cytochrome C peroxidase n=8 Tax=Halieaceae TaxID=1... [more]
A0A2E7C0L0_9GAMM2.300e-12284.86Cytochrome C peroxidase n=1 Tax=Haliea sp. TaxID=1... [more]
A0A5A9VZW3_9GAMM1.790e-10774.65Cytochrome-c peroxidase n=2 Tax=Nitrincola tapanii... [more]
A0A099PFM9_9GAMM3.970e-10774.19Cytochrome C peroxidase n=2 Tax=Nitrincola TaxID=2... [more]
W9UZM6_9GAMM5.450e-10774.19Cytochrome c551 peroxidase n=2 Tax=Nitrincola TaxI... [more]
A0A1I3SVH0_9GAMM1.680e-10572.94Cytochrome c peroxidase n=2 Tax=Gammaproteobacteri... [more]
N6W4H7_9GAMM8.650e-10573.73Cytochrome-c peroxidase n=1 Tax=Marinobacter nanha... [more]
A0A4R2KTD9_9GAMM2.930e-10472.94Cytochrome c peroxidase n=1 Tax=Chromatocurvus hal... [more]
A0A4P7XI97_9ALTE8.640e-10472.02Cytochrome C peroxidase n=1 Tax=Hydrocarboniclasti... [more]
UPI0003448C4E1.110e-10372.48cytochrome-c peroxidase n=1 Tax=Halomonas jeotgali... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102556contigM-pyrifera_M_contig102556:3..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score404.1
Seed ortholog evalue4.3e-110
Seed eggNOG ortholog1121937.AUHJ01000004_gene1046
Preferred nameccpA
KEGG koko:K00428
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Di-haem cytochrome c peroxidase
EggNOG OGs1MV70@1224,1RPPQ@1236,465W7@72275,COG1858@1,COG1858@2
EC1.11.1.5
COG Functional cat.P
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815529.1541338-CDS-M-pyrifera_M_contig102556:2..6591622815529.1541338-CDS-M-pyrifera_M_contig102556:2..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102556 3..659 +
1692277450.681991-CDS-M-pyrifera_M_contig102556:2..6591692277450.681991-CDS-M-pyrifera_M_contig102556:2..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102556 3..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102556.554.1prot_M-pyrifera_M_contig102556.554.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102556 3..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102556.554.1

>prot_M-pyrifera_M_contig102556.554.1 ID=prot_M-pyrifera_M_contig102556.554.1|Name=mRNA_M-pyrifera_M_contig102556.554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
NAVFNASHFGDCRAADLAEQAKVPVQASVEMSSTPARVTATLNSMPEYVE
RFQTAFPDAAEPVSFDNMALAIEAFETTLTTPGSAFDAYLNGDSEALTAQ
QKAGLGLFRDKGCAACHTVVNLGAQHYFPFGLIARPGADILPVGDKGRFA
VTRTASDEYVFRAAPLRNVALTAPYFHSGAVWSLEEAVAIMGRSQLGAEL
NAEEVSQITAFLESLTGKQ
back to top

mRNA from alignment at M-pyrifera_M_contig102556:3..659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102556.554.1 ID=mRNA_M-pyrifera_M_contig102556.554.1|Name=mRNA_M-pyrifera_M_contig102556.554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig102556:3..659+ (Macrocystis pyrifera P11B4 male)
AATGCGGTGTTCAATGCGTCCCATTTCGGGGACTGCCGGGCGGCCGACCT
CGCCGAACAGGCTAAAGTCCCTGTACAGGCCAGCGTGGAAATGAGCAGCA
CGCCGGCGCGGGTCACCGCAACGCTGAACAGCATGCCGGAGTATGTCGAG
CGCTTCCAAACCGCTTTCCCCGATGCAGCGGAGCCCGTGAGCTTCGACAA
CATGGCGTTGGCCATAGAAGCCTTCGAAACCACCCTCACCACGCCGGGCT
CGGCATTTGACGCCTACCTGAACGGCGACAGTGAGGCGTTGACGGCGCAA
CAAAAAGCCGGCCTCGGCCTGTTCAGGGACAAGGGCTGCGCGGCCTGCCA
CACCGTAGTTAATCTGGGCGCGCAACACTACTTTCCCTTTGGATTGATCG
CACGGCCCGGGGCTGACATATTGCCGGTAGGCGACAAGGGGCGCTTTGCA
GTAACGCGCACCGCGTCCGATGAGTATGTGTTTCGCGCGGCGCCCCTGCG
CAATGTGGCTCTCACCGCACCCTACTTCCACTCGGGCGCTGTCTGGAGCC
TTGAGGAGGCGGTTGCCATTATGGGCCGCTCCCAGCTGGGCGCCGAGCTG
AACGCCGAAGAAGTCAGCCAGATCACTGCATTCCTGGAGTCACTCACCGG
GAAACAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig102556:3..659+

>mRNA_M-pyrifera_M_contig102556.554.1 ID=mRNA_M-pyrifera_M_contig102556.554.1|Name=mRNA_M-pyrifera_M_contig102556.554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig102556:3..659+ (Macrocystis pyrifera P11B4 male)
AATGCGGTGTTCAATGCGTCCCATTTCGGGGACTGCCGGGCGGCCGACCT
CGCCGAACAGGCTAAAGTCCCTGTACAGGCCAGCGTGGAAATGAGCAGCA
CGCCGGCGCGGGTCACCGCAACGCTGAACAGCATGCCGGAGTATGTCGAG
CGCTTCCAAACCGCTTTCCCCGATGCAGCGGAGCCCGTGAGCTTCGACAA
CATGGCGTTGGCCATAGAAGCCTTCGAAACCACCCTCACCACGCCGGGCT
CGGCATTTGACGCCTACCTGAACGGCGACAGTGAGGCGTTGACGGCGCAA
CAAAAAGCCGGCCTCGGCCTGTTCAGGGACAAGGGCTGCGCGGCCTGCCA
CACCGTAGTTAATCTGGGCGCGCAACACTACTTTCCCTTTGGATTGATCG
CACGGCCCGGGGCTGACATATTGCCGGTAGGCGACAAGGGGCGCTTTGCA
GTAACGCGCACCGCGTCCGATGAGTATGTGTTTCGCGCGGCGCCCCTGCG
CAATGTGGCTCTCACCGCACCCTACTTCCACTCGGGCGCTGTCTGGAGCC
TTGAGGAGGCGGTTGCCATTATGGGCCGCTCCCAGCTGGGCGCCGAGCTG
AACGCCGAAGAAGTCAGCCAGATCACTGCATTCCTGGAGTCACTCACCGG
GAAACAGAATGCGGTGTTCAATGCGTCCCATTTCGGGGACTGCCGGGCGG
CCGACCTCGCCGAACAGGCTAAAGTCCCTGTACAGGCCAGCGTGGAAATG
AGCAGCACGCCGGCGCGGGTCACCGCAACGCTGAACAGCATGCCGGAGTA
TGTCGAGCGCTTCCAAACCGCTTTCCCCGATGCAGCGGAGCCCGTGAGCT
TCGACAACATGGCGTTGGCCATAGAAGCCTTCGAAACCACCCTCACCACG
CCGGGCTCGGCATTTGACGCCTACCTGAACGGCGACAGTGAGGCGTTGAC
GGCGCAACAAAAAGCCGGCCTCGGCCTGTTCAGGGACAAGGGCTGCGCGG
CCTGCCACACCGTAGTTAATCTGGGCGCGCAACACTACTTTCCCTTTGGA
TTGATCGCACGGCCCGGGGCTGACATATTGCCGGTAGGCGACAAGGGGCG
CTTTGCAGTAACGCGCACCGCGTCCGATGAGTATGTGTTTCGCGCGGCGC
CCCTGCGCAATGTGGCTCTCACCGCACCCTACTTCCACTCGGGCGCTGTC
TGGAGCCTTGAGGAGGCGGTTGCCATTATGGGCCGCTCCCAGCTGGGCGC
CGAGCTGAACGCCGAAGAAGTCAGCCAGATCACTGCATTCCTGGAGTCAC
TCACCGGGAAACAG
back to top