mRNA_M-pyrifera_M_contig102520.540.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102520.540.1
Unique NamemRNA_M-pyrifera_M_contig102520.540.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: A0A6H5JZZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ8_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 6.600e-64
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 1 
Query:   31 DMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWFDT 354
            +++TAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWD+ISTEAKDFITQLLQKDP+ARMSA+QSI H WF++
Sbjct:  195 EIKTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDNISTEAKDFITQLLQKDPAARMSATQSINHGWFES 302
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: A0A836CG63_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG63_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.590e-57
Identity = 88/117 (75.21%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWFD 351
            IIDFGLSRFE+  +AMTTRVGTPYYIAPEVL R YDKACDLWSIGVITYILL+GYPPFYG++D EIFASVR G FDFPSPEWDS+S +AKDFI  LL+ DP+ R++A Q++ H WF+
Sbjct:  184 IIDFGLSRFEEANSAMTTRVGTPYYIAPEVLLRSYDKACDLWSIGVITYILLSGYPPFYGDTDAEIFASVRRGEFDFPSPEWDSVSADAKDFICSLLRMDPTERLTAPQALDHPWFE 300
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: A0A835ZG53_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG53_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.310e-52
Identity = 84/117 (71.79%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWFD 351
            IIDFGLSRFED  T MTTRVGTPYYIAPEVL +KYD ACDLWSIGVITYILL GYPPFYG++D EIF +++ G F F SPEWDSIS EAKD I +LL+KD   R++ASQ++ H WF+
Sbjct:  189 IIDFGLSRFEDQATHMTTRVGTPYYIAPEVLEKKYDSACDLWSIGVITYILLCGYPPFYGDNDVEIFKAIQRGTFRFLSPEWDSISVEAKDLIQRLLEKDCRRRLTASQALVHPWFE 305
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: W7T8G8_9STRA (Calcium-dependent protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T8G8_9STRA)

HSP 1 Score: 179 bits (453), Expect = 3.520e-51
Identity = 84/116 (72.41%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWF 348
            IIDFGLSRFED Q  MTTRVGTPYYIAPEVL+R YDK+CDLWSIGVI YILL GYPPFYG++D +IFASVR   F FPSPEWD IS  AKD I +LL KDP  R SA+ ++ H WF
Sbjct:  259 IIDFGLSRFEDDQKYMTTRVGTPYYIAPEVLNRMYDKSCDLWSIGVIMYILLCGYPPFYGDTDADIFASVRRAEFTFPSPEWDDISPSAKDLIRKLLSKDPRKRPSAAAALNHEWF 374
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: A0A7S2VWQ7_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VWQ7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.090e-50
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTA--MTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWF 348
            IIDFGLSR ED      M T+VGTPYY+APEVL+++YDK+CD+WSIGVITYILL GYPPFYG++D EIFASVR   +D+PSPEWD IS +AKDFI  LL+KDP AR++AS ++ H WF
Sbjct:  210 IIDFGLSRHEDTSPTHMMKTKVGTPYYVAPEVLNKEYDKSCDMWSIGVITYILLCGYPPFYGDNDHEIFASVRAAQYDYPSPEWDDISAKAKDFIDHLLKKDPKARLTASNALDHSWF 327
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: A0A812UKM4_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UKM4_SYMMI)

HSP 1 Score: 173 bits (439), Expect = 1.120e-50
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWF 348
            IIDFGLSR++D    M+T+VGTPYYIAPEVL+RKYDK CDLWSIGV+TY+LL GYPPFYG++D EIFASV+ G FDFPSP+WD IST+AK FI   L+ D S R +A ++++H WF
Sbjct:   64 IIDFGLSRYDDEIEHMSTKVGTPYYIAPEVLTRKYDKECDLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTAREALEHPWF 179
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: D8LJD5_ECTSI (Calcium-dependent protein kinase, isoform 2 (CDPK 2) Protein kinase domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJD5_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.610e-50
Identity = 82/117 (70.09%), Postives = 98/117 (83.76%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWFD 351
            IIDFGLSRFED   AMTTRVGTPYYIAPEVLS+KYDKACDLWSIGVI +ILL GYPPF+G +D EIF +V+   + F SPEWDS+S +AKD I +LL KDP+AR++ASQ++ H WF+
Sbjct:  175 IIDFGLSRFEDGSEAMTTRVGTPYYIAPEVLSKKYDKACDLWSIGVIMFILLCGYPPFHGANDAEIFKAVQRVDYRFLSPEWDSVSDDAKDLIRKLLVKDPTARLTASQALVHPWFE 291
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: A0A812RCN9_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCN9_SYMMI)

HSP 1 Score: 173 bits (439), Expect = 3.570e-50
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWF 348
            IIDFGLSR++D    M+T+VGTPYYIAPEVL+RKYDK CDLWSIGV+TY+LL GYPPFYG++D EIFASV+ G FDFPSP+WD IST+AK FI   L+ D S R +A ++++H WF
Sbjct:  150 IIDFGLSRYDDEIEHMSTKVGTPYYIAPEVLTRKYDKECDLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTAREALEHPWF 265
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: B8CE53_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CE53_THAPS)

HSP 1 Score: 174 bits (440), Expect = 4.410e-50
Identity = 79/117 (67.52%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTA-MTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWF 348
            IIDFGLSR +DMQ   M T+VGTPYY+APEVL+R+Y K+CD+WSIGVITYILL GYPPFYG++D +IF SVR G FDFPSP+WD IS  AKDFI  LL++DPS R SA+++++H W 
Sbjct:  159 IIDFGLSRHDDMQAGIMNTKVGTPYYVAPEVLNREYTKSCDIWSIGVITYILLCGYPPFYGDTDNQIFDSVRTGRFDFPSPDWDGISDNAKDFICSLLRRDPSKRASAAEALKHPWI 275
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BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Match: A0A7S2XM18_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM18_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.050e-49
Identity = 81/117 (69.23%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:    1 IIDFGLSRFEDMQTA-MTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYILLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKDPSARMSASQSIQHRWF 348
            IIDFGLSR ++     M T+VGTPYY+APEVL+R+Y K+CD+WSIGVITYILL GYPPFYG+SD EIF+SVR G FDFPSP+WD IS  AKDFI  LL+KDPS R+SAS+++ HRW 
Sbjct:  261 IIDFGLSRHDNQNAGVMKTKVGTPYYVAPEVLNREYTKSCDIWSIGVITYILLCGYPPFYGDSDNEIFSSVRTGLFDFPSPDWDGISESAKDFICCLLKKDPSQRLSASEAMGHRWI 377
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102520.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZZ8_9PHAE6.600e-6490.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG63_9STRA2.590e-5775.21Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
A0A835ZG53_9STRA3.310e-5271.79Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
W7T8G8_9STRA3.520e-5172.41Calcium-dependent protein n=3 Tax=Monodopsidaceae ... [more]
A0A7S2VWQ7_9STRA1.090e-5067.80Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A812UKM4_SYMMI1.120e-5067.24Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
D8LJD5_ECTSI2.610e-5070.09Calcium-dependent protein kinase, isoform 2 (CDPK ... [more]
A0A812RCN9_SYMMI3.570e-5067.24Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
B8CE53_THAPS4.410e-5067.52Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2XM18_9STRA1.050e-4969.23Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102520contigM-pyrifera_M_contig102520:119..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue7.9e-42
Seed eggNOG ortholog35128.Thaps789
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.3961363-CDS-M-pyrifera_M_contig102520:118..4751622815528.3961363-CDS-M-pyrifera_M_contig102520:118..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102520 119..475 +
1692277450.3862355-CDS-M-pyrifera_M_contig102520:118..4751692277450.3862355-CDS-M-pyrifera_M_contig102520:118..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102520 119..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102520.540.1prot_M-pyrifera_M_contig102520.540.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102520 119..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102520.540.1

>prot_M-pyrifera_M_contig102520.540.1 ID=prot_M-pyrifera_M_contig102520.540.1|Name=mRNA_M-pyrifera_M_contig102520.540.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
IIDFGLSRFEDMQTAMTTRVGTPYYIAPEVLSRKYDKACDLWSIGVITYI
LLAGYPPFYGESDQEIFASVRHGYFDFPSPEWDSISTEAKDFITQLLQKD
PSARMSASQSIQHRWFDTP
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mRNA from alignment at M-pyrifera_M_contig102520:119..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102520.540.1 ID=mRNA_M-pyrifera_M_contig102520.540.1|Name=mRNA_M-pyrifera_M_contig102520.540.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig102520:119..475+ (Macrocystis pyrifera P11B4 male)
ATCATCGACTTTGGCCTCTCGCGGTTCGAGGACATGCAAACCGCGATGAC
GACCCGCGTGGGCACTCCCTACTACATCGCTCCCGAGGTTCTCTCTCGCA
AGTATGACAAGGCCTGCGACCTCTGGTCCATCGGGGTCATCACCTACATC
CTTCTGGCGGGCTACCCCCCCTTCTACGGGGAGTCCGACCAGGAAATTTT
CGCGTCGGTGCGGCACGGGTACTTCGACTTCCCCTCCCCCGAATGGGACA
GCATCTCCACCGAGGCCAAGGACTTCATCACGCAGCTCCTCCAGAAGGAC
CCTTCCGCGAGGATGTCGGCGTCGCAGTCCATCCAGCACCGGTGGTTCGA
CACGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102520:119..475+

>mRNA_M-pyrifera_M_contig102520.540.1 ID=mRNA_M-pyrifera_M_contig102520.540.1|Name=mRNA_M-pyrifera_M_contig102520.540.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig102520:119..475+ (Macrocystis pyrifera P11B4 male)
ATCATCGACTTTGGCCTCTCGCGGTTCGAGGACATGCAAACCGCGATGAC
GACCCGCGTGGGCACTCCCTACTACATCGCTCCCGAGGTTCTCTCTCGCA
AGTATGACAAGGCCTGCGACCTCTGGTCCATCGGGGTCATCACCTACATC
CTTCTGGCGGGCTACCCCCCCTTCTACGGGGAGTCCGACCAGGAAATTTT
CGCGTCGGTGCGGCACGGGTACTTCGACTTCCCCTCCCCCGAATGGGACA
GCATCTCCACCGAGGCCAAGGACTTCATCACGCAGCTCCTCCAGAAGGAC
CCTTCCGCGAGGATGTCGGCGTCGCAGTCCATCCAGCACCGGTGGTTCGA
CACGCCTATCATCGACTTTGGCCTCTCGCGGTTCGAGGACATGCAAACCG
CGATGACGACCCGCGTGGGCACTCCCTACTACATCGCTCCCGAGGTTCTC
TCTCGCAAGTATGACAAGGCCTGCGACCTCTGGTCCATCGGGGTCATCAC
CTACATCCTTCTGGCGGGCTACCCCCCCTTCTACGGGGAGTCCGACCAGG
AAATTTTCGCGTCGGTGCGGCACGGGTACTTCGACTTCCCCTCCCCCGAA
TGGGACAGCATCTCCACCGAGGCCAAGGACTTCATCACGCAGCTCCTCCA
GAAGGACCCTTCCGCGAGGATGTCGGCGTCGCAGTCCATCCAGCACCGGT
GGTTCGACACGCCT
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