mRNA_M-pyrifera_M_contig102502.538.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102502.538.1
Unique NamemRNA_M-pyrifera_M_contig102502.538.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5KC05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC05_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 8.230e-45
Identity = 76/101 (75.25%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    1 IPEAALANGFWVGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQ 303
            +P+AALANGFWVGTLPD LQ  T VER+A + +R KGHVVALESR+V NIPG+A+RS+RGTSVFYAN+SSSVATELPLAATGLLDM T++LAGK KP   Q
Sbjct:  164 LPDAALANGFWVGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPXGIQ 264
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.380e-35
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:   34 VGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            VGTLPD LQ  T VER+A + +R KGHVVALESR+V NIPG+A+RS+RGTSVFYAN+SSSVATELPLAATGLLDM T++LAGK KP  S L R
Sbjct:  160 VGTLPDELQKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGR 252
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5K101_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K101_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 8.760e-32
Identity = 62/89 (69.66%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:   46 PDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            P  +   T VER+A + +R KGHVVALESR+V NIPG+A+RS+RGTSVFYAN+SSSVATELPLAATGLLDM T++LAGK KP  S L R
Sbjct:  182 PYKIHKATFVERAAAYPIRTKGHVVALESRRVNNIPGTAKRSMRGTSVFYANNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGR 270
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5KP43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP43_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 9.970e-23
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    1 IPEAALANGFWVGTLPDHLQDTTAVERSAVF--LVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            IP AA+       T  D     T +   A+   L   + H+ A  +R+V NIPG+A+RS+RGTSVFYA +SSSVATELPLAATGLLDM T++LAGK KP  S L R
Sbjct:   83 IPTAAIETTEGQKTCRDSANLMTPLRAEALLQGLQDFRDHMFAGSTRRVNNIPGTAKRSMRGTSVFYAKNSSSVATELPLAATGLLDMITVVLAGKKKPKTSDLGR 188
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.380e-20
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IPEAALANGFWVGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            +PEAALANG W+G  PDHL+  T VE  A   VR+ G V+AL+  KVGN+ GSA+  +RGT  FY  D+  V   LP   T +   FT  L G  KP+  QL++
Sbjct:  117 MPEAALANGLWLGDFPDHLRGATFVEMMAASPVRISGMVLALDELKVGNVRGSAKSLMRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGA-KPSVGQLRK 219
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.410e-20
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IPEAALANGFWVGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            +PEAALANG W+G  PDHL+  T VE  A   VR+ G V+AL+  KVGN+ GSA+  +RGT  FY  D+  V   LP   T +   FT  L G  KP+  QL++
Sbjct:  197 MPEAALANGLWLGDFPDHLRGATFVEMMAASPVRISGMVLALDELKVGNVRGSAKSLMRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVGA-KPSVGQLRK 299
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.220e-19
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    1 IPEAALANGFWVGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            IPEAALANG W+G  P+HL+  T VE  A   VR+ G V+AL+  K G++ GSA+  +RGT  FY  D+  V   LP   T +   FT  L G  KP  +QL+R
Sbjct:  313 IPEAALANGLWLGDFPEHLRSATFVEMIAASPVRISGMVLALDELKTGSVSGSAKSQMRGTFTFYMQDAYGVQLRLPACDTDIAGSFTCALVG-CKPNLAQLRR 415
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.690e-18
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    4 PEAALANGFWVGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            P A LANG WVG  P+HL+D+T VE +A   VR  G V ALE  KVG IPGSA R +RGT  F+  ++  V   LP   T +    T  L G  +PT +QL++
Sbjct: 2316 PYATLANGLWVGDFPEHLKDSTWVEMAAASPVRTSGMVFALEQLKVGAIPGSAHRMMRGTFTFFFQNAYGVEKVLPTCDTDIAGSMTCALVGA-RPTEAQLRK 2417
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BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 9.310e-18
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 IPEAALANGFWVGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNIPGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            +PEAALANG W+G  P+HL+  + VE  A   VRV G V+AL+  KVGNI GSA+  +R T  FY  D+  V  +LP     +    TI+L G +  T +QL+R
Sbjct:  278 MPEAALANGLWLGEFPEHLRSASFVELIAASPVRVSGIVLALDELKVGNIAGSAKSLMRSTFTFYMQDAYGVQLKLPACDADIAGSITIVLVGANA-TPAQLRR 380
[Close]
BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.550e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  172 LRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTASQLKR 312
            +RGTSVFYAN+SSSV TELPL ATGLLDM T++LAGK  P  S L R
Sbjct:    1 MRGTSVFYANNSSSVTTELPLVATGLLDMITVVLAGKKNPKTSDLGR 47
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102502.538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KC05_9PHAE8.230e-4575.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H7_9PHAE1.380e-3574.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K101_9PHAE8.760e-3269.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP43_9PHAE9.970e-2352.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8N9_9PHAE3.380e-2047.12Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE3.410e-2047.12Helitron_like_N domain-containing protein n=1 Tax=... [more]
D7G3U9_ECTSI2.220e-1946.15ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KTA2_9PHAE3.690e-1846.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIB1_9PHAE9.310e-1845.19ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K657_9PHAE5.550e-1272.34Helitron_like_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102502contigM-pyrifera_M_contig102502:316..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue7.7e-17
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.2935455-CDS-M-pyrifera_M_contig102502:315..6271622815528.2935455-CDS-M-pyrifera_M_contig102502:315..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102502 316..627 -
1692277450.3558836-CDS-M-pyrifera_M_contig102502:315..6271692277450.3558836-CDS-M-pyrifera_M_contig102502:315..627Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102502 316..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102502.538.1prot_M-pyrifera_M_contig102502.538.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102502 316..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102502.538.1

>prot_M-pyrifera_M_contig102502.538.1 ID=prot_M-pyrifera_M_contig102502.538.1|Name=mRNA_M-pyrifera_M_contig102502.538.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
IPEAALANGFWVGTLPDHLQDTTAVERSAVFLVRVKGHVVALESRKVGNI
PGSAQRSLRGTSVFYANDSSSVATELPLAATGLLDMFTIILAGKHKPTAS
QLKR
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mRNA from alignment at M-pyrifera_M_contig102502:316..627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102502.538.1 ID=mRNA_M-pyrifera_M_contig102502.538.1|Name=mRNA_M-pyrifera_M_contig102502.538.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig102502:316..627- (Macrocystis pyrifera P11B4 male)
ATTCCAGAGGCTGCGTTAGCAAACGGCTTTTGGGTTGGGACGTTACCAGA
CCATCTCCAGGATACGACGGCAGTCGAGCGTTCTGCTGTTTTTCTCGTTC
GCGTCAAGGGGCATGTTGTCGCGTTGGAGTCAAGGAAGGTTGGAAACATA
CCTGGTTCCGCCCAACGATCTCTTCGCGGGACATCAGTTTTCTACGCGAA
CGATTCGTCGTCCGTTGCGACTGAGTTGCCTCTGGCTGCGACTGGTTTAT
TGGATATGTTTACAATAATACTCGCTGGAAAACACAAGCCCACGGCGTCT
CAGCTTAAGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102502:316..627-

>mRNA_M-pyrifera_M_contig102502.538.1 ID=mRNA_M-pyrifera_M_contig102502.538.1|Name=mRNA_M-pyrifera_M_contig102502.538.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig102502:316..627- (Macrocystis pyrifera P11B4 male)
ATTCCAGAGGCTGCGTTAGCAAACGGCTTTTGGGTTGGGACGTTACCAGA
CCATCTCCAGGATACGACGGCAGTCGAGCGTTCTGCTGTTTTTCTCGTTC
GCGTCAAGGGGCATGTTGTCGCGTTGGAGTCAAGGAAGGTTGGAAACATA
CCTGGTTCCGCCCAACGATCTCTTCGCGGGACATCAGTTTTCTACGCGAA
CGATTCGTCGTCCGTTGCGACTGAGTTGCCTCTGGCTGCGACTGGTTTAT
TGGATATGTTTACAATAATACTCGCTGGAAAACACAAGCCCACGGCGTCT
CAGCTTAAGCGCATTCCAGAGGCTGCGTTAGCAAACGGCTTTTGGGTTGG
GACGTTACCAGACCATCTCCAGGATACGACGGCAGTCGAGCGTTCTGCTG
TTTTTCTCGTTCGCGTCAAGGGGCATGTTGTCGCGTTGGAGTCAAGGAAG
GTTGGAAACATACCTGGTTCCGCCCAACGATCTCTTCGCGGGACATCAGT
TTTCTACGCGAACGATTCGTCGTCCGTTGCGACTGAGTTGCCTCTGGCTG
CGACTGGTTTATTGGATATGTTTACAATAATACTCGCTGGAAAACACAAG
CCCACGGCGTCTCAGCTTAAGCGC
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