mRNA_M-pyrifera_M_contig101909.408.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101909.408.1
Unique NamemRNA_M-pyrifera_M_contig101909.408.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A5A8C8E4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C8E4_CAFRO)

HSP 1 Score: 138 bits (347), Expect = 7.370e-36
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   10 FSGCRFRYTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAGVVPTQLYLAGWFCVMDVVILTQYAYLTWYNRNKKPSTGEEGSDEAASLLD 366
            FS C   YT  +  AF  G+SS+ FWLVCQLPQF++N RR S EALS+ FL+EWLGGD+LNFTGS+L G++PTQ++LAGWF VMDV IL QY YL   NR +        SD  A + +
Sbjct:   19 FSDCI--YTTTDQVAFYFGLSSMAFWLVCQLPQFIKNCRRKSAEALSLCFLVEWLGGDILNFTGSVLTGMLPTQVWLAGWFVVMDVFILGQYIYLYLLNRGRPKDAAIVDSDSDAEITE 135          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A7S1C8F4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8F4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.190e-28
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   31 YTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAGVVPTQLYLAGWFCVMDVVILTQYAY 291
            YTPLE++A LIGMSSI FW+ CQLPQFL+N++R S +ALS WFLLEWL GD  N TG IL   +PTQLY A  F   D ++L+Q+ Y
Sbjct:   54 YTPLELSACLIGMSSILFWIACQLPQFLKNYQRGSADALSFWFLLEWLSGDTFNLTGCILTRQLPTQLYTAYLFAFQDSIMLSQFLY 140          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A812QPZ6_9DINO (Laat-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QPZ6_9DINO)

HSP 1 Score: 117 bits (293), Expect = 2.670e-28
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    7 HFSGCRFRYTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAGVVPTQLYLAGWFCVMDVVILTQYAYLTWYNRNKKPSTG 330
            +FS C   Y   + AAF IGM+S+ FW++CQ PQF +NWR  + EALS+ FLLEWLGGD LN  G IL   +PTQ Y A  F  MD ++++QY YLT+ N   KP TG
Sbjct:   24 YFSDCV--YEAQDTAAFYIGMTSLFFWILCQAPQFYKNWRAGTAEALSVLFLLEWLGGDSLNLAGCILTNQLPTQTYTAILFVAMDAIMMSQYVYLTYIN--PKPKTG 127          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A061RKT4_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKT4_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 4.110e-24
Identity = 45/98 (45.92%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    1 QKHFSGCRFRYTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAG-VVPTQLYLAGWFCVMDVVILTQYAY 291
            +K+F  C   Y+  +  +F  GM+SI  WLV Q+PQ ++N++    EALS WFL++WL GD  N  G + +G  +PTQ+Y AG+F +MDVV+L QY Y
Sbjct:   27 RKYFCDCI--YSTSDTISFAFGMASIAVWLVAQIPQLVENYKNQRAEALSAWFLVDWLMGDTCNLLGCLASGNQLPTQVYTAGYFVLMDVVVLMQYIY 122          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A8J9RZB2_9CHLO (Lysosomal amino acid transporter 1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RZB2_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 2.690e-22
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    7 HFSGCRFRYTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAG-VVPTQLYLAGWFCVMDVVILTQYAYLTWYNRNKK 318
            +F  C + Y   ++A F++GMSSIG WLV Q+PQ + N R  S EALS WFL EWL GD  N  G +L G  + TQ+Y A +F   DVV++ QY Y T  +R ++
Sbjct:   15 YFRDCIYSYQ--DLAGFILGMSSIGCWLVAQMPQIISNIRNQSAEALSPWFLAEWLLGDTCNLIGCLLTGNQLATQVYTAMYFVCADVVLVVQYIYYTTLSRRRQ 117          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A2R5G6Q7_9STRA (Lysosomal amino acid transporter 1-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6Q7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.080e-22
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   31 YTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAGVVPTQLYLAGWFCVMDVVILTQYAYLTWYNRNKKPSTGEEGSDEAA 354
            Y+  EI++ ++G SSIGFW+ CQ+PQ ++N R+ S  ALS WFLLEW  GD LN TG++L   +PTQL  A  F   D ++++Q  Y + Y   +    G    D+ A
Sbjct:   33 YSGAEISSVIVGFSSIGFWIACQMPQIIKNIRKRSASALSKWFLLEWFLGDALNLTGALLTKQLPTQLATAFLFICNDCIMISQLTYYSIYGVQEGDDQGSSDPDDDA 140          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A0D2X483_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X483_CAPO3)

HSP 1 Score: 97.1 bits (240), Expect = 1.330e-21
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   34 TPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAGVVPTQLYLAGWFCVMDVVILTQYAY 291
            T ++IA+  IG+SSIGFWLV Q PQ   N++  + E+L++ FL++WL GD+ N  G+IL   +PTQ+Y A +FC +D ++++QYAY
Sbjct:   26 TDVQIASAFIGLSSIGFWLVAQSPQIYMNFKNGNCESLALLFLVQWLLGDITNLVGAILTDQLPTQVYTAVYFCCIDAIMVSQYAY 111          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A2K1IIL8_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IIL8_PHYPA)

HSP 1 Score: 97.4 bits (241), Expect = 2.130e-21
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   31 YTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAG-VVPTQLYLAGWFCVMDVVILTQYAY 291
            Y+  E+ +F  G+SS+ FWLV Q+PQF+ NWR  S EALS WFL +WL GD  NF G +L G  + TQ   A +F   D +I++QY+Y
Sbjct:   29 YSHWELTSFCFGLSSVLFWLVAQVPQFISNWRLQSAEALSPWFLFQWLAGDTFNFLGCLLTGNQLATQTLSASYFMFADFIIISQYSY 116          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A7S0WZU9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WZU9_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 2.980e-21
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 QKHFSGCRFRYTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAGV-VPTQLYLAGWFCVMDVVILTQYAYLTWYNRNK 315
            ++HF  C   YT  ++  F +G++SI  W+  QLPQF+ N+RR S EALS+WFL +W  GD LN  G++L G  + T + LA +F + DVV+L Q+ Y T   R +
Sbjct:   14 EQHFRDCV--YTTPQLIGFCLGLASIALWITAQLPQFIDNYRRQSAEALSVWFLAQWFLGDTLNLLGALLNGQQLATTVMLACYFVLSDVVMLCQFLYYTALQRQR 117          
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Match: A0A1Y2HGH3_9FUNG (PQ loop repeat-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HGH3_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 4.010e-21
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   31 YTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALSIWFLLEWLGGDVLNFTGSILAGVVPTQLYLAGWFCVMDVVILTQYAYLTWYN 306
            Y+  E AA L+G +SIGFWL CQ PQ + NWR  + E+LS+ FL  WLGGDV+N  G +L    P Q YLA +F ++D  +  Q A   WYN
Sbjct:   31 YSWGEAAAVLLGYASIGFWLFCQTPQLVANWRAKTAESLSLSFLFIWLGGDVMNLAGCLLTSQQPFQTYLAAYFVLIDFSLCVQSA---WYN 119          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101909.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C8E4_CAFRO7.370e-3656.30Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1C8F4_9STRA2.190e-2860.92Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812QPZ6_9DINO2.670e-2852.78Laat-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A061RKT4_9CHLO4.110e-2445.92Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
A0A8J9RZB2_9CHLO2.690e-2246.67Lysosomal amino acid transporter 1 n=1 Tax=Coccomy... [more]
A0A2R5G6Q7_9STRA5.080e-2242.59Lysosomal amino acid transporter 1-like n=1 Tax=Ho... [more]
A0A0D2X483_CAPO31.330e-2147.67Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A2K1IIL8_PHYPA2.130e-2148.86Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
A0A7S0WZU9_9CHLO2.980e-2143.40Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A1Y2HGH3_9FUNG4.010e-2148.91PQ loop repeat-domain-containing protein n=1 Tax=C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101909contigM-pyrifera_M_contig101909:89..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue3.4e-19
Seed eggNOG ortholog5762.XP_002680217.1
Preferred namePQLC2
KEGG koko:K05543
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015174,GO:0015179,GO:0015181,GO:0015189,GO:0015238,GO:0015318,GO:0015711,GO:0015802,GO:0015807,GO:0015809,GO:0015819,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0034220,GO:0042221,GO:0042493,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055081,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0080144,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1902022,GO:1902475,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
EggNOG free text desc.basic amino acid transmembrane export from vacuole
EggNOG OGsKOG2913@1,KOG2913@2759
EC1.3.1.91
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.3497763-CDS-M-pyrifera_M_contig101909:88..4601622815519.3497763-CDS-M-pyrifera_M_contig101909:88..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101909 89..460 -
1692277447.1280074-CDS-M-pyrifera_M_contig101909:88..4601692277447.1280074-CDS-M-pyrifera_M_contig101909:88..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101909 89..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101909.408.1prot_M-pyrifera_M_contig101909.408.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101909 89..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101909.408.1

>prot_M-pyrifera_M_contig101909.408.1 ID=prot_M-pyrifera_M_contig101909.408.1|Name=mRNA_M-pyrifera_M_contig101909.408.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
QKHFSGCRFRYTPLEIAAFLIGMSSIGFWLVCQLPQFLQNWRRMSVEALS
IWFLLEWLGGDVLNFTGSILAGVVPTQLYLAGWFCVMDVVILTQYAYLTW
YNRNKKPSTGEEGSDEAASLLDKE
back to top

mRNA from alignment at M-pyrifera_M_contig101909:89..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101909.408.1 ID=mRNA_M-pyrifera_M_contig101909.408.1|Name=mRNA_M-pyrifera_M_contig101909.408.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig101909:89..460- (Macrocystis pyrifera P11B4 male)
CAAAAACATTTCTCGGGTTGTCGTTTCAGGTACACGCCATTGGAAATCGC CGCGTTTCTGATCGGGATGAGCTCGATCGGGTTCTGGCTGGTGTGTCAGC TGCCGCAGTTTCTGCAGAACTGGCGGCGCATGAGCGTGGAGGCGCTTTCG ATTTGGTTCCTCCTGGAGTGGCTGGGAGGTGACGTTTTGAACTTTACAGG ATCGATTCTTGCGGGGGTGGTGCCGACGCAGCTGTACCTTGCAGGCTGGT TTTGCGTGATGGACGTGGTGATTCTGACGCAATACGCCTATTTGACTTGG TACAACCGGAACAAGAAGCCCAGCACAGGGGAGGAAGGGAGCGATGAAGC TGCTTCTCTGCTGGACAAGGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101909:89..460-

>mRNA_M-pyrifera_M_contig101909.408.1 ID=mRNA_M-pyrifera_M_contig101909.408.1|Name=mRNA_M-pyrifera_M_contig101909.408.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig101909:89..460- (Macrocystis pyrifera P11B4 male)
CAAAAACATTTCTCGGGTTGTCGTTTCAGGTACACGCCATTGGAAATCGC
CGCGTTTCTGATCGGGATGAGCTCGATCGGGTTCTGGCTGGTGTGTCAGC
TGCCGCAGTTTCTGCAGAACTGGCGGCGCATGAGCGTGGAGGCGCTTTCG
ATTTGGTTCCTCCTGGAGTGGCTGGGAGGTGACGTTTTGAACTTTACAGG
ATCGATTCTTGCGGGGGTGGTGCCGACGCAGCTGTACCTTGCAGGCTGGT
TTTGCGTGATGGACGTGGTGATTCTGACGCAATACGCCTATTTGACTTGG
TACAACCGGAACAAGAAGCCCAGCACAGGGGAGGAAGGGAGCGATGAAGC
TGCTTCTCTGCTGGACAAGGAACAAAAACATTTCTCGGGTTGTCGTTTCA
GGTACACGCCATTGGAAATCGCCGCGTTTCTGATCGGGATGAGCTCGATC
GGGTTCTGGCTGGTGTGTCAGCTGCCGCAGTTTCTGCAGAACTGGCGGCG
CATGAGCGTGGAGGCGCTTTCGATTTGGTTCCTCCTGGAGTGGCTGGGAG
GTGACGTTTTGAACTTTACAGGATCGATTCTTGCGGGGGTGGTGCCGACG
CAGCTGTACCTTGCAGGCTGGTTTTGCGTGATGGACGTGGTGATTCTGAC
GCAATACGCCTATTTGACTTGGTACAACCGGAACAAGAAGCCCAGCACAG
GGGAGGAAGGGAGCGATGAAGCTGCTTCTCTGCTGGACAAGGAA
back to top