mRNA_M-pyrifera_M_contig101897.401.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101897.401.1
Unique NamemRNA_M-pyrifera_M_contig101897.401.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101897.401.1 vs. uniprot
Match: A0A4R3MN68_9BACI (Uncharacterized protein n=2 Tax=Melghiribacillus thermohalophilus TaxID=1324956 RepID=A0A4R3MN68_9BACI)

HSP 1 Score: 73.6 bits (179), Expect = 2.940e-13
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   16 LRTTDHGMERLIERGLLDK-ADEIYRNPTYRIIQGTDGAEVFIKKRSSRRRVYDYIVVGDNGIVSALDNLSKDQLNKLAVNFEW 264
            ++TT HG ERLIERG   K   E+  NP     Q +DGAEVFIK+ + +   Y+ IV GDNG+++AL N+SK  L++L  N++W
Sbjct:  369 VKTTKHGAERLIERGFTPKDISELKLNPDIVKTQ-SDGAEVFIKQVNGK---YNVIVEGDNGVITALKNISKKSLDRLEKNYDW 448
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BLAST of mRNA_M-pyrifera_M_contig101897.401.1 vs. uniprot
Match: M9M515_PAEPP (Mismatch repair ATPase (Fragment) n=1 Tax=Paenibacillus popilliae ATCC 14706 TaxID=1212764 RepID=M9M515_PAEPP)

HSP 1 Score: 67.8 bits (164), Expect = 3.580e-12
Identity = 32/84 (38.10%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   16 LRTTDHGMERLIERGLLDKADEIYRNPTYRIIQGTDGAEVFIKKRSSRRRVYDYIVVGDNGIVSALDNLSKDQLNKLAVNFEWE 267
            ++TTDHG ERL+ RG         +    +++  +DGA V+IK+ S+ +  ++ IV  +NG+V+AL N+S++ LN+L+ N+EW+
Sbjct:   82 IKTTDHGAERLMVRGFTPSEISDLKLSPSKVMTQSDGAGVYIKEISAGK--FNVIVESENGVVTALKNISENSLNRLSKNYEWK 163
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BLAST of mRNA_M-pyrifera_M_contig101897.401.1 vs. uniprot
Match: A0A498RCS1_9FIRM (Pectin lyase fold/virulence factor n=1 Tax=Lucifera butyrica TaxID=1351585 RepID=A0A498RCS1_9FIRM)

HSP 1 Score: 68.9 bits (167), Expect = 1.380e-11
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:   16 LRTTDHGMERLIERGLL-DKADEIYRNPTYRIIQGTDGAEVFIKKRSSRRRVYDYIVVGDNGIVSALDNLSKDQLNKLAVNFEWE 267
            +RTT+HG+ RL+ RG   ++  +I  +P  +I+   DGA VFIK  S  +  Y  IV G+NG+V+AL N+S+  LN+LA N+ WE
Sbjct: 2516 VRTTEHGVVRLLGRGFTPEEISDIKLSPD-KIMTQADGANVFIKSFSDGK--YSVIVEGENGVVTALRNISEKSLNRLANNYGWE 2597
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BLAST of mRNA_M-pyrifera_M_contig101897.401.1 vs. uniprot
Match: A0A0U4NE67_9BACL (Uncharacterized protein n=1 Tax=Aneurinibacillus soli TaxID=1500254 RepID=A0A0U4NE67_9BACL)

HSP 1 Score: 63.9 bits (154), Expect = 6.480e-10
Identity = 30/84 (35.71%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   16 LRTTDHGMERLIERGLLDKADEIYRNPTYRIIQGTDGAEVFIKKRSSRRRVYDYIVVGDNGIVSALDNLSKDQLNKLAVNFEWE 267
            ++TT+HG ERL+ RG         +    +++  +DGA V+IK   + +  ++ IV  +NG+V+AL N+S++ LNKL+ N+ W+
Sbjct:  265 IKTTEHGAERLMSRGFSPSDISALKLSPSKVLTQSDGASVYIKDIGAGK--FNVIVESENGVVTALKNISENSLNKLSRNYGWK 346
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101897.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A4R3MN68_9BACI2.940e-1347.62Uncharacterized protein n=2 Tax=Melghiribacillus t... [more]
M9M515_PAEPP3.580e-1238.10Mismatch repair ATPase (Fragment) n=1 Tax=Paenibac... [more]
A0A498RCS1_9FIRM1.380e-1144.71Pectin lyase fold/virulence factor n=1 Tax=Lucifer... [more]
A0A0U4NE67_9BACL6.480e-1035.71Uncharacterized protein n=1 Tax=Aneurinibacillus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101897contigM-pyrifera_M_contig101897:7..285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.0090995-CDS-M-pyrifera_M_contig101897:6..2851622815519.0090995-CDS-M-pyrifera_M_contig101897:6..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101897 7..285 +
1692277447.007536-CDS-M-pyrifera_M_contig101897:6..2851692277447.007536-CDS-M-pyrifera_M_contig101897:6..285Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101897 7..285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101897.401.1prot_M-pyrifera_M_contig101897.401.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101897 7..285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101897.401.1

>prot_M-pyrifera_M_contig101897.401.1 ID=prot_M-pyrifera_M_contig101897.401.1|Name=mRNA_M-pyrifera_M_contig101897.401.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
STPGGLRTTDHGMERLIERGLLDKADEIYRNPTYRIIQGTDGAEVFIKKR
SSRRRVYDYIVVGDNGIVSALDNLSKDQLNKLAVNFEWENWF*
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mRNA from alignment at M-pyrifera_M_contig101897:7..285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101897.401.1 ID=mRNA_M-pyrifera_M_contig101897.401.1|Name=mRNA_M-pyrifera_M_contig101897.401.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig101897:7..285+ (Macrocystis pyrifera P11B4 male)
TCGACACCTGGTGGTTTACGTACAACTGATCACGGCATGGAGCGCTTGAT
AGAGAGGGGGCTTCTTGACAAGGCGGACGAAATTTATAGAAATCCGACAT
ATCGGATAATTCAGGGTACTGATGGTGCGGAAGTTTTCATAAAGAAGCGG
AGCAGCAGACGGCGAGTATATGACTATATAGTGGTCGGAGATAATGGAAT
AGTATCTGCATTGGACAATCTCAGCAAGGACCAGCTAAATAAATTGGCAG
TCAATTTTGAGTGGGAGAATTGGTTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101897:7..285+

>mRNA_M-pyrifera_M_contig101897.401.1 ID=mRNA_M-pyrifera_M_contig101897.401.1|Name=mRNA_M-pyrifera_M_contig101897.401.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig101897:7..285+ (Macrocystis pyrifera P11B4 male)
TCGACACCTGGTGGTTTACGTACAACTGATCACGGCATGGAGCGCTTGAT
AGAGAGGGGGCTTCTTGACAAGGCGGACGAAATTTATAGAAATCCGACAT
ATCGGATAATTCAGGGTACTGATGGTGCGGAAGTTTTCATAAAGAAGCGG
AGCAGCAGACGGCGAGTATATGACTATATAGTGGTCGGAGATAATGGAAT
AGTATCTGCATTGGACAATCTCAGCAAGGACCAGCTAAATAAATTGGCAG
TCAATTTTGAGTGGGAGAATTGGTTTTAGTCGACACCTGGTGGTTTACGT
ACAACTGATCACGGCATGGAGCGCTTGATAGAGAGGGGGCTTCTTGACAA
GGCGGACGAAATTTATAGAAATCCGACATATCGGATAATTCAGGGTACTG
ATGGTGCGGAAGTTTTCATAAAGAAGCGGAGCAGCAGACGGCGAGTATAT
GACTATATAGTGGTCGGAGATAATGGAATAGTATCTGCATTGGACAATCT
CAGCAAGGACCAGCTAAATAAATTGGCAGTCAATTTTGAGTGGGAGAATT
GGTTTTAG
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