mRNA_M-pyrifera_M_contig101896.400.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101896.400.1
Unique NamemRNA_M-pyrifera_M_contig101896.400.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: A0A8J8SW66_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8SW66_HALGN)

HSP 1 Score: 77.4 bits (189), Expect = 1.330e-14
Identity = 45/150 (30.00%), Postives = 77/150 (51.33%), Query Frame = 1
Query:   22 KQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQFRSRG-GEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFV 468
            K+AF  FD D++G+I   E     R LG +   +E+ ++ K++   G G+I+   F++ +        +K+ +R          + VEE+ + FK  D D +G + LR      +E+G  +SD EL+ ++   DKDGDG +   EFL  +
Sbjct:   42 KEAFDLFDTDKTGTIDYHELKVAMRALGFDVKKAEVLNLMKEYDREGAGQIEYHDFLEIM-------TTKIGER----------DPVEEILKAFKLFDEDSTGKISLRNLRRVARELGENLSDDELQAMIDEFDKDGDGEINEQEFLNIM 174          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: A0A8H5HEA3_9AGAR (Uncharacterized protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HEA3_9AGAR)

HSP 1 Score: 76.3 bits (186), Expect = 2.330e-14
Identity = 47/142 (33.10%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   19 YKQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQFR-SRGGEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSV 441
            +K+AF  FD+D  G+ITP+E     R+LG   +D+ELRS+ ++      G ID G F+         G+  L  +  + V     +  +E+E  F+  D DGSG +   E  G ++ +   ++D EL  +M A D++GDG V
Sbjct:   15 FKEAFALFDKDNDGTITPDELGTIMRQLGKSPTDAELRSMIREVDVDHNGRIDFGEFL---------GMMALGPKAIQGVD----DDDKEMELAFRVFDKDGSGMISEEELRGVMRSLNVNLTDRELGAMMEAADQNGDGEV 143          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: N4VSR6_COLOR (Calmodulin n=19 Tax=Colletotrichum TaxID=5455 RepID=N4VSR6_COLOR)

HSP 1 Score: 75.1 bits (183), Expect = 5.260e-14
Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   19 YKQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQFRS-RGGEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFV 468
            YK+ F  FD+D +G IT +E     R LG+  SD+EL  +  +  +   G ID   F++ +                   K + G++ EE++  FK  D DGSG++   E    L  +G  ++ +E+  ++   DK+GDGS+  DEF   +
Sbjct:   14 YKEVFDLFDKDGTGDITAQELGEVMRSLGLNPSDTELNDMVNEVDADNNGTIDFNEFLNLMAQ-----------------KVQIGDAEEELKNAFKVFDRDGSGTISAEELRHVLTSLGENMTKAEIDEMIQMADKNGDGSIDYDEFASIM 147          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: A0A4V6DH86_9PEZI (Calmodulin n=1 Tax=Colletotrichum tanaceti TaxID=1306861 RepID=A0A4V6DH86_9PEZI)

HSP 1 Score: 75.9 bits (185), Expect = 7.200e-14
Identity = 45/151 (29.80%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   19 YKQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQFRS-RGGEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFV 468
            Y++ F  FD+D +G IT +E     R LG+  SD+EL  +  +  +   G ID   F++ +                   K + G++ EE++  FK  D DGSG++   E    L  +G  ++ +E+  ++   DKDGDGS+  DEF   +
Sbjct:   61 YREVFDLFDKDGTGDITAQELGEVMRSLGLNPSDTELNDMVNEVDADNNGTIDFNEFLNLMAQ-----------------KVQIGDAEEELKNAFKVFDRDGSGTISAEELRHVLTSLGENMTPAEIDEMIQMADKDGDGSIDYDEFASIM 194          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: A7RUF3_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RUF3_NEMVE)

HSP 1 Score: 74.3 bits (181), Expect = 1.240e-13
Identity = 47/150 (31.33%), Postives = 72/150 (48.00%), Query Frame = 1
Query:   22 KQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQF-RSRGGEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFV 468
            K+AF+  D D SG I  E+F   A+  G + S  +L+ V  +F +    EI+ G FVD ++  E S        LRE                F++ D DGSG +   E    +   G ++S+ E R L+   DK+ DG +  +EF+EF+
Sbjct:   23 KRAFKRADSDASGKIQGEQFCLAAKDAGFDTSTEDLQRVLSKFDKDTDSEINFGEFVDMMKYIEDSSGQDFEANLRE---------------AFRKFDRDGSGYISPEELRYVVCHSGEKLSEDEARELIDMFDKNKDGQLSWEEFVEFI 157          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: A0A485L781_9STRA (Aste57867_17057 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L781_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.550e-13
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    7 RGVTYKQAFRHFDRDQSGSITPEEFVAGARRLGVE---ASDSELRSVAKQFRSRG-GEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVE---EVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDS-ELRMLMHALDKDGDGSVQSDEFLEFVG 471
            RGV ++  F   D D  G +T  EF+ G RRLG E    + + +R+    F + G   I+   F+ +L         KL   LR+E+++ F  +V    +V  +F+++D    G +  REF+ ALK +GFRVSD  +     H+LD DG+G++   EF+  +G
Sbjct: 1068 RGVDFRTMFETLDGDGDGVVTTTEFLDGLRRLGPEFAAVAPASVRACIAAFDANGDSRINYVEFLAFLHK-------KLHLSLRQELQAIFTRAVANGTDVAALFRQLDTSRDGQLSFREFEMALKHVGFRVSDRRQFDAFCHSLDDDGNGTISYMEFIRHMG 1223          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: Q9XZV2_EUPOC (Centrin protein n=2 Tax=Euplotes TaxID=5935 RepID=Q9XZV2_EUPOC)

HSP 1 Score: 73.6 bits (179), Expect = 3.040e-13
Identity = 45/149 (30.20%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   22 KQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQFRSRGGEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFV 468
            K+AF  FD +++GSI   E     R LG +    E+  +  ++   G       ++         G     D + E++K+R  + VEE+ + FK  D D SG + LR      KE+G  +SD EL+ ++   DKD DG +   EFL  +
Sbjct:   30 KEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREG-----NGYI---------GFDDFLDIMTEKIKNR--DPVEEILKAFKVFDEDNSGKISLRNLKRVAKELGENLSDDELQAMIDEFDKDQDGEISEQEFLNIM 162          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: K1PYT1_CRAGI (Calmodulin n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1PYT1_CRAGI)

HSP 1 Score: 73.9 bits (180), Expect = 4.870e-13
Identity = 50/155 (32.26%), Postives = 74/155 (47.74%), Query Frame = 1
Query:   19 YKQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQFRSRG-GEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFVGARG 480
            +K+AFR FD+D SG+I+ +E     R LG   SD EL  + ++    G GEID   F+                 L    K    +S +E+   FK  D +GSGS+        +  MG R+SD E+  ++   D DGDG +  DEF++ +   G
Sbjct:   26 FKEAFRLFDKDGSGTISNDELGTVMRSLGQNPSDQELTDLVEEVDIDGNGEIDFQEFL-----------------LMMAKKMNAVDSEQEIREAFKVFDKEGSGSISSAYLRHIMTTMGDRLSDDEVDEMIQEADMDGDGDIDYDEFVKMLAGAG 163          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: A0A135UKC1_9PEZI (Calmodulin n=2 Tax=Colletotrichum acutatum species complex TaxID=2707335 RepID=A0A135UKC1_9PEZI)

HSP 1 Score: 71.6 bits (174), Expect = 1.860e-12
Identity = 50/164 (30.49%), Postives = 78/164 (47.56%), Query Frame = 1
Query:   19 YKQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQFRSRGGEIDAGAFVDWLQNEESSGVSK---------LADRLREEV-----KSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFV 468
            YK+ F  FD+D +G IT +E     R LG+  SD+EL  +  +      + D    +D+    ES   S          L D   E +     K + G++ EE++  FK  D DGSG++   E    L  +G  ++ +E+  ++   DKDGDGS+  DEF   +
Sbjct:   13 YKEVFDLFDKDGTGDITAQELGEVMRSLGLNPSDTELNDMVNEV-----DADNNGTIDFNGEFESPPPSARPLFHMEHMLTDFPPEFLNLMAQKVQVGDAEEELKNAFKVFDRDGSGTISAEELRHVLTSLGENMTAAEIDEMIQMADKDGDGSIDYDEFASIM 171          
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Match: A0A5E4ND41_9HEMI (EF-Hand 1, calcium-binding site,EF-hand domain pair,EF-hand domain n=2 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4ND41_9HEMI)

HSP 1 Score: 69.3 bits (168), Expect = 1.120e-11
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   22 KQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELR----SVAKQFRSRGGEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVFKRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSDEFLEFV 468
            K+AF+ F+RD SGSI  +E     R LG E    E++    S+ KQ  S    I    F++ +         K+AD+          +S EE+ + FK  D + SG +  +      +E+G  ++D EL+ ++   DKDGDG V  +EFL+ +
Sbjct:   25 KEAFQLFNRDGSGSIETKELKVAMRALGFEPKKEEIKRMLNSLNKQHNSF---ITYEDFINLMS-------MKMADK----------DSREEIIKAFKLFDDNCSGKITFQNLKRIAQELGENIADEELQEMIDEADKDGDGEVSQEEFLQIM 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101896.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J8SW66_HALGN1.330e-1430.00Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A8H5HEA3_9AGAR2.330e-1433.10Uncharacterized protein n=1 Tax=Tricholomella cons... [more]
N4VSR6_COLOR5.260e-1429.80Calmodulin n=19 Tax=Colletotrichum TaxID=5455 RepI... [more]
A0A4V6DH86_9PEZI7.200e-1429.80Calmodulin n=1 Tax=Colletotrichum tanaceti TaxID=1... [more]
A7RUF3_NEMVE1.240e-1331.33Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A485L781_9STRA2.550e-1333.13Aste57867_17057 protein n=1 Tax=Aphanomyces stella... [more]
Q9XZV2_EUPOC3.040e-1330.20Centrin protein n=2 Tax=Euplotes TaxID=5935 RepID=... [more]
K1PYT1_CRAGI4.870e-1332.26Calmodulin n=2 Tax=Crassostrea gigas TaxID=29159 R... [more]
A0A135UKC1_9PEZI1.860e-1230.49Calmodulin n=2 Tax=Colletotrichum acutatum species... [more]
A0A5E4ND41_9HEMI1.120e-1131.37EF-Hand 1, calcium-binding site,EF-hand domain pai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101896contigM-pyrifera_M_contig101896:112..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog44056.XP_009034409.1
KEGG koko:K02183,ko:K09338,ko:K14684,ko:K15100,ko:K16466
KEGG TC1.I.1,2.A.29.23,2.A.29.7
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759,KOG0032@1,KOG0032@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko02000,ko03000,ko03019,ko03036,ko04131,ko04147
Exons1
Model size525
Cds size525
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.963327-CDS-M-pyrifera_M_contig101896:111..6361622815518.963327-CDS-M-pyrifera_M_contig101896:111..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101896 112..636 +
1692277446.994455-CDS-M-pyrifera_M_contig101896:111..6361692277446.994455-CDS-M-pyrifera_M_contig101896:111..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101896 112..636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101896.400.1prot_M-pyrifera_M_contig101896.400.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101896 112..636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101896.400.1

>prot_M-pyrifera_M_contig101896.400.1 ID=prot_M-pyrifera_M_contig101896.400.1|Name=mRNA_M-pyrifera_M_contig101896.400.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
MKRGVTYKQAFRHFDRDQSGSITPEEFVAGARRLGVEASDSELRSVAKQF
RSRGGEIDAGAFVDWLQNEESSGVSKLADRLREEVKSRFGESVEEVERVF
KRMDGDGSGSVGLREFDGALKEMGFRVSDSELRMLMHALDKDGDGSVQSD
EFLEFVGARGGGRGGRGGGGGRGGG
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mRNA from alignment at M-pyrifera_M_contig101896:112..636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101896.400.1 ID=mRNA_M-pyrifera_M_contig101896.400.1|Name=mRNA_M-pyrifera_M_contig101896.400.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig101896:112..636+ (Macrocystis pyrifera P11B4 male)
ATGAAGCGCGGCGTAACGTACAAACAGGCGTTCCGCCACTTCGACCGCGA TCAGTCGGGCAGCATCACACCGGAAGAGTTCGTGGCTGGTGCGCGTCGGC TGGGCGTGGAGGCGAGTGACAGCGAGCTGCGATCCGTGGCGAAGCAGTTC CGTTCCCGTGGTGGGGAGATCGATGCTGGGGCGTTCGTGGACTGGCTGCA GAACGAGGAGTCGAGCGGTGTGTCGAAGCTGGCGGACCGGCTCCGGGAGG AGGTGAAGTCTCGGTTCGGGGAGAGTGTGGAGGAGGTGGAGCGTGTGTTC AAGCGCATGGATGGCGATGGGAGTGGGTCTGTGGGTCTGCGCGAGTTCGA TGGGGCGTTGAAGGAGATGGGCTTCCGGGTGTCGGACAGCGAGTTGCGCA TGTTGATGCACGCGTTGGACAAGGACGGGGATGGTTCTGTTCAGAGTGAT GAGTTCTTGGAGTTCGTTGGCGCTCGGGGCGGTGGTCGTGGCGGTCGTGG TGGTGGTGGTGGCCGCGGCGGTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101896:112..636+

>mRNA_M-pyrifera_M_contig101896.400.1 ID=mRNA_M-pyrifera_M_contig101896.400.1|Name=mRNA_M-pyrifera_M_contig101896.400.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig101896:112..636+ (Macrocystis pyrifera P11B4 male)
ATGAAGCGCGGCGTAACGTACAAACAGGCGTTCCGCCACTTCGACCGCGA
TCAGTCGGGCAGCATCACACCGGAAGAGTTCGTGGCTGGTGCGCGTCGGC
TGGGCGTGGAGGCGAGTGACAGCGAGCTGCGATCCGTGGCGAAGCAGTTC
CGTTCCCGTGGTGGGGAGATCGATGCTGGGGCGTTCGTGGACTGGCTGCA
GAACGAGGAGTCGAGCGGTGTGTCGAAGCTGGCGGACCGGCTCCGGGAGG
AGGTGAAGTCTCGGTTCGGGGAGAGTGTGGAGGAGGTGGAGCGTGTGTTC
AAGCGCATGGATGGCGATGGGAGTGGGTCTGTGGGTCTGCGCGAGTTCGA
TGGGGCGTTGAAGGAGATGGGCTTCCGGGTGTCGGACAGCGAGTTGCGCA
TGTTGATGCACGCGTTGGACAAGGACGGGGATGGTTCTGTTCAGAGTGAT
GAGTTCTTGGAGTTCGTTGGCGCTCGGGGCGGTGGTCGTGGCGGTCGTGG
TGGTGGTGGTGGCCGCGGCGGTGGCATGAAGCGCGGCGTAACGTACAAAC
AGGCGTTCCGCCACTTCGACCGCGATCAGTCGGGCAGCATCACACCGGAA
GAGTTCGTGGCTGGTGCGCGTCGGCTGGGCGTGGAGGCGAGTGACAGCGA
GCTGCGATCCGTGGCGAAGCAGTTCCGTTCCCGTGGTGGGGAGATCGATG
CTGGGGCGTTCGTGGACTGGCTGCAGAACGAGGAGTCGAGCGGTGTGTCG
AAGCTGGCGGACCGGCTCCGGGAGGAGGTGAAGTCTCGGTTCGGGGAGAG
TGTGGAGGAGGTGGAGCGTGTGTTCAAGCGCATGGATGGCGATGGGAGTG
GGTCTGTGGGTCTGCGCGAGTTCGATGGGGCGTTGAAGGAGATGGGCTTC
CGGGTGTCGGACAGCGAGTTGCGCATGTTGATGCACGCGTTGGACAAGGA
CGGGGATGGTTCTGTTCAGAGTGATGAGTTCTTGGAGTTCGTTGGCGCTC
GGGGCGGTGGTCGTGGCGGTCGTGGTGGTGGTGGTGGCCGCGGCGGTGGC
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