mRNA_M-pyrifera_M_contig10186.393.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10186.393.1
Unique NamemRNA_M-pyrifera_M_contig10186.393.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: D8LLP4_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP4_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 3.450e-109
Identity = 181/298 (60.74%), Postives = 208/298 (69.80%), Query Frame = 1 
Query:    1 MGNNGSSHASTFSRGQGATSDIRDAMSSLPGSQPKNKTGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLVALPDLSTLSALTDISAGGNRFRGPEAVKGLPLCLTKLVLRENKLGEVPLAVTNGLPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGLD 894
            MGN  SSH+STFSRGQGATSD RDA++SLPGS PKNKTG+KVTAQK+KTAGATGVLALQEHGLK++P+ LF LV LR LNM+S                            +PDLS LS+LTD+SAG N+  G  A+  LP CL KLVLR+N+LGEVP AV +GLPALQVLDLSAN I+ + P  A L              +LG+E            RSNRIAAVDPFSGQQ+  +   + A+S VESLELAGN LDKTD M+MEGVD FLARREKNKN+NLQGGGMLTLSVCGLD
Sbjct:    1 MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNQLAGAGALGALPACLKKLVLRDNRLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALEELILDENSLRALGDELVGLSKLKKLSVRSNRIAAVDPFSGQQSISRG--LFADSAVESLELAGNALDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 296
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A7S2EAS0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAS0_TRICV)

HSP 1 Score: 124 bits (312), Expect = 2.250e-30
Identity = 95/269 (35.32%), Postives = 128/269 (47.58%), Query Frame = 1 
Query:  133 QKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLV--ALPDLSTLSALTDISAGGNRFRGPEAVKG-----------LPLCLTKLVLRENKLGEVPLAVTN-GLPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDP-FSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGLD 894
            QKI+TA  TG+L+L+EH L  VPD ++ L NLR L++S N+L  L   +  L  LK+L  DSN L   +L  +S LS L  +SAGGNR   P   +G           LP+ L +L L  N    VP  + N  L  L+ LDLS N +  I    A L              SL EE            R+N I      FS +  +   + +   + V  L L GN +  T     +G   FL RR K KN+N+ GG +  L+VCGL+
Sbjct:    1 QKIETAQKTGILSLREHKLDDVPDSVYELSNLRTLDLSKNNLTVLGRNLVNLANLKSLNCDSNKLQPGSLAPVSRLSKLQTLSAGGNRLGEPSRTEGPSQPQPEPLPSLPVSLKQLKLDTNFFSSVPPQICNPSLVKLEKLDLSFNFLATIPAGIAYLTSLVDINLDSNSIVSLPEEIGQLKKLKALSLRNNHIQVHSTVFSEKNPQPIPESLFTNTLVIDLNLHGNKMTNTQLNDFQGFHFFLERRTKVKNKNVYGGALTDLNVCGLE 269
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A5D6XNJ4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNJ4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.220e-30
Identity = 121/287 (42.16%), Postives = 158/287 (55.05%), Query Frame = 1 
Query:   43 GQGATS--DIRDAMSSLPGSQPKNKTGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLS-EAISTLKKLKTLRLDSNHLVALPDLSTLSALTDISAGGNRFRGPEAVKGLPLCLTKLVLRENKLGEVPLAVTNGLPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGLD 894
            GQ AT   + R A  S P      K  + V  QK+K+A ATGVLAL +H LKQ+P +L  L NLR L++SSN L +L  +  + L +L+TL+L  N L ALPDLS L+                  + LP  LTKL L+ N+L E+PL+VT  L  LQ LD+S NE+ A+     AL     XXXXXXXXX     XXXXXXXXXXX    R+               +E+L +S V  + L GN + K D   M+G + FL RR + KN+ + GG    +S+CGLD
Sbjct:    2 GQAATKAQEARAAAKSRP------KQTRSVLQQKLKSAAATGVLALPDHKLKQLPRELLELANLRSLDVSSNRLAELPRDFAAALPQLRTLKLAGNALTALPDLSALTXXXXXXXXXXXXXXXX--EALPPNLTKLSLKNNRLRELPLSVTR-LAQLQELDVSGNELAALPEHVGALASLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGPHGIA---------REVLTDSGVHIMNLEGNPMSKFDLEAMDGFERFLERRTQAKNKEIHGGLSADVSLCGLD 270
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A024UGH6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGH6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.210e-27
Identity = 112/261 (42.91%), Postives = 146/261 (55.94%), Query Frame = 1 
Query:  112 TGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLVALPDLSTLSALTDISAGGNRFRGPEAVKGLPLCLTKLVLRENKLGEVPLAVTNGLPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGLD 894
            T K V AQKI  A ATG+L+L+   LKQVP D+F +  L  L++S N + +L   I+ L  LKTL++D N L  LPDLS L  L ++ A  N       + GLP+ L+KL +R NKL   P  +++ L  L+VLD                XXXXXXXXXXXXXX     XXXXXXXXXX AR N++      +         E L  S V  ++L GN + K D   MEGV AFL RR+  K++ + GG    +S+CGLD
Sbjct:   17 TKKSVQAQKIDRAHATGILSLKGCKLKQVPVDVFNIPTLHTLDLSLNDITELPPRIAQLTALKTLKVDGNQLTRLPDLSPLVKLNNLVADNNVIA---VIDGLPMSLSKLSVRNNKLTSFPRCISS-LARLEVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFARHNQLGPPQSLAP--------EFLQHSSVNVMQLEGNPMTKHDLEAMEGVAAFLERRKILKDKEIHGGLSTDVSLCGLD 265
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A6G0WCG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCG6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.420e-27
Identity = 114/261 (43.68%), Postives = 149/261 (57.09%), Query Frame = 1 
Query:  112 TGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLVALPDLSTLSALTDISAGGNRFRGPEAVKGLPLCLTKLVLRENKLGEVPLAVTNGLPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGLD 894
            T K V AQKI+ A ATG+L+L+   LKQ+P D+F +  L  L++S N++ +L   I+ L  LKTL++D N LV LPDLS L  LT ++A  N       +  L   LTKL LR NKL  +P +V   L AL+ LD++              XXXXXXXXXXXXXX     XXXXXXXXXX AR N +       G Q+     E L  S V  ++L GN L K D   M+G  AF+ RR+  K++ + GG    +S+CGLD
Sbjct:   16 TKKSVQAQKIERARATGILSLKGCKLKQIPADVFAIPTLHTLDLSQNAITELPPQITELTALKTLKVDGNQLVELPDLSALVKLTTLAADNNTLT---RIGALAPNLTKLTLRGNKLTTLPESVCT-LTALETLDVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFARHNEL-------GPQSFAP--EFLHGSAVNVMQLEGNPLTKLDLEAMDGAQAFMERRKILKDKEIHGGLSTDVSLCGLD 263
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A7S1B3G2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3G2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.840e-24
Identity = 106/276 (38.41%), Postives = 147/276 (53.26%), Query Frame = 1 
Query:   94 SQPKNKTGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLV--ALPDLSTLSALTDISAGGNRFRGP-------EAVKGLPLCLTKLVLRENKLGEVPLAVTNG-LPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGL 891
            SQPKNKTGK V  QK++ A  TG+L+LQEH L++VP ++  + NLR L++S NSL DLS+  S L  LK L  + N L   +L   + LS L  ++AG NR  G         +   LP  L +L L  N    +P  + +  L  L+ LDLS N +  + P    L     XXXXXXXXX     XXXXXXXXXXX   N    ++  +  Q    +  + +++ +  L L  N++  +  M  +G   FL RR K K +N+ GG +  L  CGL
Sbjct:    6 SQPKNKTGKSVVRQKLENASKTGILSLQEHHLEEVPHEVVSISNLRSLDLSKNSLVDLSKLCS-LVNLKVLNCEFNKLRPGSLQSATNLSKLQTLNAGNNRLGGQVLSNQTQSSFPELPASLKELKLPSNSFLSIPPQICSANLTKLENLDLSNNSLAHVPPEIKFLKSLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXN---GMNGTTSPQPLPPS--LFSDTQLIDLNLHENVMTNSQLMDYDGFSDFLERRRKVKTKNIAGGALTDLDTCGL 275
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A7S2HXS7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HXS7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.770e-23
Identity = 115/293 (39.25%), Postives = 156/293 (53.24%), Query Frame = 1 
Query:   91 GSQPKNKTGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEA--ISTLKKLKTLRLDSNHLVA--LPDLSTLSALTDISAGGNRFRGPEAV-------------KGLPLCLTKLVLRENKLGEVPLAVTNG-LPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAA------VDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQM-EGVDAFLARREKNKNRNLQGGGMLTLSVCGLD 894
            GSQPKNKTGKKV  QK++ +  TGVL+L+EH L  +P+ +F + NL  L++S+N+L  L E   IS L  LK+   + N L A  L  +STL+ L ++SAG N+   P  +               LP  L  + L  N    +P  + +  L  L  LD S N + +I P  +  XXXXXXXXXXXXXX     XXXXXXXXXXX    +I          P +  Q      E+  ++ V  L L GN L  T   ++ +G   FL RR+K K++ + GG +  L VCGLD
Sbjct:    5 GSQPKNKTGKKVLTQKLENSKKTGVLSLREHKLDTIPNQVFDITNLTSLDVSTNNLKTLGEPTKISKLSNLKSFNCEDNKLQAGTLSSISTLTKLQNLSAGSNQLGKPLVLVVDEQRKTIESLPNTLPSSLKSIKLDNNSFSAIPPQICSSKLTKLVKLDFSKNNLASIPPEISNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQITVPTKNTVFSPETNPQPIPP--EVFRDTSVVDLNLHGNRLTSTQLNELFDGYHDFLERRKKIKSKGIDGGALTDLDVCGLD 295
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A418AK49_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AK49_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.070e-23
Identity = 107/250 (42.80%), Postives = 141/250 (56.40%), Query Frame = 1 
Query:  112 TGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLVALPDLSTLSALTDISAGGNRFRGPEAVKGLPLCLTKLVLRENKLGEVPLAVTNGLPALQVLDLSANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGG 861
            T K V AQKI  A ATG+L+L+   LKQVP D+F +  L  L++S N + +L   I+ L  LKTL++D N L  LPDLS L  L ++ A  N       + GLP+ L+KL +R NKL   P  +++ L  L+VLD++              XXXXXXXXXXXXXX     XXXXXXXXXX AR N++      +         E L  S V  ++L GN + K D   MEGV AFL RR+  K++ + GG
Sbjct:   17 TKKSVQAQKIDRAHATGILSLKGCKLKQVPVDVFNIPTLHTLDLSLNDITELPPRIAQLTALKTLKVDGNQLTRLPDLSPLVKLNNLVADNNVIA---VIDGLPMSLSKLSVRNNKLTSFPRCISS-LARLEVLDIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFARHNQLGPPQSLAP--------EFLQHSSVNVMQLEGNPMTKHDLEAMEGVAAFLERRKILKDKEIHGG 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: A0A225UJM0_9STRA (Putative LRR protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJM0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.760e-21
Identity = 111/278 (39.93%), Postives = 144/278 (51.80%), Query Frame = 1 
Query:   94 SQPKNKTGKKVTAQKIKTAGATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLVALPDLSTLSALTDISAGGNRFRGPEAVKGLPLCLTKLVLRENKLGEVPLAVTNGLPALQVLDL------------SANEIQAITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGL 891
            S+PKN   + V  QK+K+A ATGVLAL    LK++PD+L+ L  LR L++S                          L ALPDLS L ALT +   GN     +    LP  L KL L+ NKL  VP ++ + L  LQ LDL            S N +  +      +  XXXXXXXXXXXX     XXXXXXXXXX AR N +  V   +G + +    ++L +S V+ + L GN + K D   M+G DAFL RR K KN+ + GG    LS+CGL
Sbjct:   17 SKPKN--SRSVQQQKLKSAKATGVLALPNSKLKKLPDELWQLSTLRSLDLSXXXXXXXXXXXXXXXXXXXXXXXXXXLAALPDLSPLQALTTLVLDGNVLE--DLPLALPPNLIKLSLKGNKLRAVPRSILS-LVHLQELDLIXXXXXXXXXXXSDNALDLLPANLGEMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNSL--VGKSAGAKTQPIAAQLLQDSAVQVMNLDGNPMTKEDLQAMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 287
[Close]
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Match: B8CC09_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC09_THAPS)

HSP 1 Score: 95.5 bits (236), Expect = 1.890e-19
Identity = 98/252 (38.89%), Postives = 137/252 (54.37%), Query Frame = 1 
Query:  163 VLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLKTLRLDSNHLVA--LPDLSTLSALTDISAGGNRFRGP--EAVKGLPLCLTKLVLRENKLGEVPLAVTNG-LPALQVLDLSANEIQA----ITPLSAALXXXXXXXXXXXXXXSLGEEXXXXXXXXXXXARSNRIAAVDPFSGQQARKKNKEMLAESPVESLELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGL 891
            VL+L EHGL+++P +++ L +LR L++S N +  L + +S LK+LK+   D N L +  L  LS L+ L  +S G NR   P  +A   LP  + +L +  N L  +P  + +  +  L+ LDLS N + A    I  LSA      XXXXXXXXXX     XXXXXXXXXXX    +       S  Q    +  +  ++ +  L L GN L  T   + EG +AFL RR+K K +NL GG M  + VCGL
Sbjct:   15 VLSLTEHGLEEIPAEVYRLTSLRTLDLSKNKISSLGK-VSQLKELKSFNCDENVLTSSELAPLSNLTKLQSLSLGKNRLENPSNQAFPSLPPTIKQLKIYGNSLSSIPKQICDPKMKLLEKLDLSFNNLAAVPIEICNLSALTDLNLXXXXXXXXXXXXXXXXXXXXXXXXXXYIQVKSTNFSDSSNPQPIPAS--VFEDTLLIDLNLHGNKLSSTQLNEFEGFNAFLERRKKVKTKNLYGGAMTDMGVCGL 263
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10186.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP4_ECTSI3.450e-10960.74Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
A0A7S2EAS0_TRICV2.250e-3035.32Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A5D6XNJ4_9STRA3.220e-3042.16Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024UGH6_9STRA1.210e-2742.91Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0WCG6_9STRA4.420e-2743.68Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1B3G2_9STRA8.840e-2438.41Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2HXS7_9STRA1.770e-2339.25Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A418AK49_9STRA7.070e-2342.80Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A225UJM0_9STRA5.760e-2139.93Putative LRR protein n=1 Tax=Phytophthora megakary... [more]
B8CC09_THAPS1.890e-1938.89Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10186contigM-pyrifera_M_contig10186:523..7067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue1.8e-87
Seed eggNOG ortholog2880.D8LLP4
Preferred nameLRRC57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size897
Cds size897
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10186.393.1prot_M-pyrifera_M_contig10186.393.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10186 523..7067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.5430348-CDS-M-pyrifera_M_contig10186:522..6411622815518.5430348-CDS-M-pyrifera_M_contig10186:522..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 523..641 +
1692277446.814309-CDS-M-pyrifera_M_contig10186:522..6411692277446.814309-CDS-M-pyrifera_M_contig10186:522..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 523..641 +
1622815518.557119-CDS-M-pyrifera_M_contig10186:1459..15711622815518.557119-CDS-M-pyrifera_M_contig10186:1459..1571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 1460..1571 +
1692277446.8265424-CDS-M-pyrifera_M_contig10186:1459..15711692277446.8265424-CDS-M-pyrifera_M_contig10186:1459..1571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 1460..1571 +
1622815518.5703382-CDS-M-pyrifera_M_contig10186:2692..27911622815518.5703382-CDS-M-pyrifera_M_contig10186:2692..2791Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 2693..2791 +
1692277446.8366115-CDS-M-pyrifera_M_contig10186:2692..27911692277446.8366115-CDS-M-pyrifera_M_contig10186:2692..2791Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 2693..2791 +
1622815518.5806792-CDS-M-pyrifera_M_contig10186:3645..38221622815518.5806792-CDS-M-pyrifera_M_contig10186:3645..3822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 3646..3822 +
1692277446.8464384-CDS-M-pyrifera_M_contig10186:3645..38221692277446.8464384-CDS-M-pyrifera_M_contig10186:3645..3822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 3646..3822 +
1622815518.5964575-CDS-M-pyrifera_M_contig10186:4623..48401622815518.5964575-CDS-M-pyrifera_M_contig10186:4623..4840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 4624..4840 +
1692277446.8549645-CDS-M-pyrifera_M_contig10186:4623..48401692277446.8549645-CDS-M-pyrifera_M_contig10186:4623..4840Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 4624..4840 +
1622815518.6084127-CDS-M-pyrifera_M_contig10186:6894..70671622815518.6084127-CDS-M-pyrifera_M_contig10186:6894..7067Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 6895..7067 +
1692277446.8641195-CDS-M-pyrifera_M_contig10186:6894..70671692277446.8641195-CDS-M-pyrifera_M_contig10186:6894..7067Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10186 6895..7067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10186.393.1

>prot_M-pyrifera_M_contig10186.393.1 ID=prot_M-pyrifera_M_contig10186.393.1|Name=mRNA_M-pyrifera_M_contig10186.393.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=299bp
MGNNGSSHASTFSRGQGATSDIRDAMSSLPGSQPKNKTGKKVTAQKIKTA
GATGVLALQEHGLKQVPDDLFLLVNLRMLNMSSNSLHDLSEAISTLKKLK
TLRLDSNHLVALPDLSTLSALTDISAGGNRFRGPEAVKGLPLCLTKLVLR
ENKLGEVPLAVTNGLPALQVLDLSANEIQAITPLSAALPALAELILDENA
IRSLGEEVSGLPKLKKLSARSNRIAAVDPFSGQQARKKNKEMLAESPVES
LELAGNLLDKTDFMQMEGVDAFLARREKNKNRNLQGGGMLTLSVCGLD*
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mRNA from alignment at M-pyrifera_M_contig10186:523..7067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10186.393.1 ID=mRNA_M-pyrifera_M_contig10186.393.1|Name=mRNA_M-pyrifera_M_contig10186.393.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6545bp|location=Sequence derived from alignment at M-pyrifera_M_contig10186:523..7067+ (Macrocystis pyrifera P11B4 male)
ATGGGGAACAACGGATCGTCGCACGCATCGACCTTCTCTCGAGGCCAAGG
CGCCACGTCTGATATTCGGGATGCAATGTCAAGCTTGCCGGGGTCTCAAC
CTAAGAACAAGACGGGAAAGTGAGCTACGAAAAACAGCAGAGGGACCACT
TCCTTTTGCCTTGTTGGCCATGAGCCCCGCGTCCGGTGTCGGGTTCAGCT
TGCTTTATATCCTCTGTAGTTCTCGGTGTAGGTGTCGGACTAACGGCGGC
TGTGCTGAAGGTTGAAAATGCAGTGAATCTCTGCGCAATTTACGGACGGA
CGTATCACCTACGTACGAGTACAGCACTGCTGGTGCCCGAGTATGGGAGA
CATGGAGTAAGTACATAAAAGAGGTCGAAAAATTACGAAGCGAAGCAGGT
CCAAGGCGGTCATGTCATCTGTCTTCCGTCGCGCACATACGACAAGTAGC
GATCGCCCGACTGGTTACACATTGCTGCCTACTGCTGTCAGTCGCAGCAG
TGCTGCAGCAATTGTTACGGTTACATTGCCGCCTACCAGGTACAAGTACA
AGGTACATGTCTACGTACTCTCCCTGACTGCCTGTCCCGAACGGAGGCGA
AACAGGCAATGCACCGCTGTGGCGGACGATACATAAGTACCTTGTTCTGC
CCCGACAAAACCTACTGTAAGCGATCTTACCGTGACGTCCTATAGTAGGT
TGCCGAGCAGTAAATATCGTACCATACGTAATATCTTCATACTTGGTAAC
TCTGTGGAGTTAAGGATGGGCGTGTGGGTCGAATCGCGATGAGCACCTGC
TCTCTCTACCCATCTCTCATCCTATCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTTCC
CTCTGTTTTCCTGCACCCACGCGTGGGTGACTGGCAGGAAGGTGACGGCC
CAAAAGATTAAAACGGCGGGAGCCACGGGGGTGTTGGCGCTCCAAGAGCA
CGGTCTGAAGCAGGTGCCAGACGACCTGTTTCTGCTCGTCAACTTAAGAG
TGAGCCTCGAACTGCGCTGCACAGCAGCACACATCACAGCAGTCACATTT
CTGTCTTCAGTCTGGACTCTGGACTCACGGTCTGGCGGGCAGATCCCTCG
GGCTCCCTTGTTGCGTTGCGTTGCAGCGGAGGGCTAGATGTAGCCAGCTC
GAGAAGAGGCAGTTTTCAACATTTACAGTAGGTACCAGGATAGCAGTAGA
AATAGTAGAATACGTGGTAGTACTAATTGTAAAATAAGTAGTACTTGTAG
TAATATTAGTGCAGTAGTATCAGCAGCAGCAGTAGCAGTAGTAAAGTAAA
TGGAAATAGTGTAGTATAGCAGCAGTATCATCGTAGTAGTAGCAGCAGCA
GTAGTATTAGTTCGTCGTGGGACGGCTCCTTTCAGGTGTTGCGGGTACGC
TGCCTGCGGGAGCTACCTACTCTCAAACGAGCACCTGGTACTAGATATAG
TTATTACGGCAGCAGGAAGACTGACGTGGTTGGTCTAAGAGCGCAAACCG
TGAGGCCCGTAGCCTTGGGGCATATCGCTGCCTCCCCCCCCCCGCCCTCC
GTCGGTGCACCCTGCAACTTAGCTGCGCTGGAGACGGCGCTGCTTGCTCG
CTCCCTGAACGAGCTTTGCCACGTACTGTAGGTCCGGGAGTGTACGGGGA
CGGCCTGGAAATGCTCGACTCAACGGTGATGTTGGCACGATTCTTTCTGC
TGGTGACCGTTCTCCTCTTCATGTAGTGTACTGTATGTACTACTGCACGC
ATGGTACTTCGGTAATCGTTCTTCGTGTTACTCTTTTTATTTCGCCTACC
TTGCGGTCGCTTGGTCGCACGGCTAACCTTCCCCCGTCATGTATCTCTCC
CTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCTGTTTCTCGTTTTTTTCC
TTGCTCCCCCCCTTCCCACACGCTTGCCTCCCTCCCTCCCTTCCTCTTCC
GCCCCCCTCCTTGCCCCCCCTTCCCACGCCCTTCCCTCCCTCCCTCCCCC
GTGCTATCCCACCCTCCCTTCCCTCCTTCTGCCCCCTCTTCCTCCCCCCC
CTCCCCGCCCATTCACCCGCCCACCCACCCCGAAACGTCGGCCGGATGGG
GATTGAATATTTTATTTCAGATGTTGAACATGTCGTCGAACTCTCTCCAC
GATCTGTCGGAGGCGATCAGCACGCTAAAGAAGCTCAAGACGCTGCGACT
CGATAGCAACCATCTCGTTGTAAGTTTCTGTCTCCGTGAAGCGCCTGGAT
GGTTATCCCCACCCTACCCCTCCCGCGTTCTCTCTCTGCCCATCTCCCCG
TTTCTCTTTGTTGATGTCTGCCTCTTTGTCTCTTCCTGTCTGTTGCCGTC
TCCCTTCTTTTTCTTTGCTCCCCCTCTGGGTTTGACTGTCTGATCGTCTG
ACTCTTCTTTTCAGCCCCTTTTTTTACCGAGCCTCCAGCTCTACCCCTCT
CTCTACCTCTAACTCTCTCCCGTCCCTGACTTTATTATTATAGCTCTCCT
TTTTTTGCGTATATCCCTCTCTTATACACACGCTCTCTCCATTTCCCTCG
CTCTTTGCTCCCTTTCTCTCCGTGTTTGTGTGTCTCACGTGTCCGATCTT
GAAGTTTTCAATGCTACGTTAAACCTGGCAACGAGTAATAGATAGTTACC
ACCGAATCGATGGCCGAGTCCCATGACGAGCACAGCAGCCATAAGCACCA
GGGCAGACTGCCATGTGTATGGGCCGCCCGCGGTACCGATCCTGTATTCA
GCTTTTAAAACCCCCGTAGCACTCATTACCCCCACATTTTTGGGGTAAAC
TACTGCACGTCGTATTGTAGGTGGGCGTTTTTCGCTGCTGAAAAAAAAAG
AGGTTAAACAAGAGGCGCAAATGTCCTCGAATTTGCCATCGGATCAACTT
CTTGGTGCAAGCGATGTCGGCCTGGTCCGGTGAAAACCCGACGTGCTCCG
CCCCGGCGTTGTACGGTAGAGATGCGCGGGTCTACGGTGATCCGACTACG
GCTATGCGTGACTTATGAGTATCCCCCCCCCCCCCTTCCTCTTCACCAAC
ATTCCATCTCCCGCGCGCCGCAGGCTCTCCCCGACCTCAGCACCCTTTCC
GCCCTGACAGACATTTCAGCTGGAGGGAATCGGTTCCGTGGCCCCGAGGC
CGTGAAAGGATTGCCACTGTGCCTGACGAAGCTGGTCCTGCGAGAAAACA
AGCTGGGGGAGGTGCCGCTCGCGGTGACGAACGGCCTTCCCGCTCTACAG
GTGGAGATCCCTTGTGTACTAAACACAGCAGTTTTCGAGCGAAGCGAGTT
TTGCCGAAAAATATGCAGGGCCGCCTAGCGTGTACTGGTAGAGGGATATA
GGGCGTGCCTTAGCCCCACTTTGGGCCCCAAGAATTTATCGAAACAAAAA
ATATCATCTTGTTGGCGTTTCGGCCGTGTGTATACTGCAGAAGCAGTGTG
AGCGCCCGGCTGTACGTGTAGGGTCGTCATGCGCCTCCCTGCCGTACGAC
TCCTCTGCGCTGTATCTCGGACTCCAGTTTTGTATCATCCCCGCCCCCCC
GCCCCGCCCCCGGATCACGCAGTGGCCGTTTTTTTTTTAAACCGTCATTT
GTTTTCAGTCAATTTTCGTCTCTGAAAGCCCCAAGAGGGTGAATGCATCG
TTTTTTTGGTACGGCCGCCTAAAGTATGATGGGCACGGCGCTGCCGTGGT
GGCGTAGGCGTGGGTAAATCCCCCCCCCCCCTCTTGACCACGCGTGGAGC
GACGCTTACATACCAAGACAGACGCGGTGTGTGCCCTGCGCGATGCCGGA
GCTAAGCGGCGGCGTGGAGAAGCACTTGCATATATCTCCAGATCGTAGGA
GCAGTGATGGCGCGTTGCTGGACCTAGCTACAGTAGGTGTCAAGAGCGCT
TTCTGAACGCGCGCCGCCAGGAGGGTGGGGGGCTGTGTCACAGTCTCCCC
CCCCCCCACTCCAGCCCACCCACTCTGCCTTACCGGCACTTTTCGCAGTC
ACGGGGTGGGCGAGAAGCTGATTCGCCCGTCGTCGTATGTATGCTCATCA
GGTGCTCGACCTGTCGGCGAACGAGATCCAGGCCATAACTCCCCTATCCG
CCGCCTTGCCGGCTCTGGCGGAGCTGATTCTGGACGAGAACGCGATACGA
TCGCTGGGGGAGGAGGTTAGCGGGCTGCCGAAGCTGAAGAAGCTCTCTGC
CAGGTCTAACCGCATCGCGGCAGTAGACCCCTTCAGCGGACAGCAGGCAA
GAAAGAAAAATAAAGAAAGTCAATGAAGAACAAATGCCCCCTGCTTGAGA
AACCCGTTTAAAGTTACCCTTTTTTACAGTAGGTACTGACCGCACTGCTA
CGCAGAAGACCATGTGCCACGGTAGTGCTCCGCCGAAAGTGTACCACGCT
GGTCGGAAATATAAGGACCGTTGAGAGATTACGGTCTCAATATTAACAAT
TAGAGCCCATCTTACCGGGGAACACTAAATTTCGTTCAATCAGATGTAAA
TTAAATCAGAAGAAAAAAAATCTAGTCAAATTGAAAGAACCGAAAGTCCT
GCCCTTAAAATTAAAGTAGAAGAAAAAAAATCAAGTCAAATTGAAAGAGC
CGAAAGTCCCCGTTAAGAGCCCTTACGGGGGACCATAGTGAATAGGACTA
AATATTGTTGGTAAAATAGGTAAATATATAGGTTTTTGTGTGTACCGTAG
GTCCTATTTACTGTGTTCACTCGTAATGGTATGAATACGAAATGGTCCTC
ATCTTTTTATTTTTTTGCCCCGGAGTGGTAATTTTAGGCTCCTTCCTCGC
TCGAGGAGCTTCGAACGACTTTCACACAAAAACCGATTTTGAGACGAAAC
AAACCTTGCACACCTTTGACGGACCGATGATGTTCTATCTATCTATCTAT
CTATCTACACATCAGATAGATCATCTAGATCCTCACCACCTGCCGTTGTG
AGAGGTTTGTGTAGGATCTGCCGTATAGGGGCCAGAAAATAGGTGCTACT
GTAGATCATGCTGATCATGCGTCTCCCACGTGGCAACATGAGCTAAATCG
TACAGATCATACAAGATCTGGACGAATAGATGCTATATCTGCCTTGAAAG
ATCTAGATCATGAACTGTGGGAATCGATCATCTAGATCGTGATCTGTCCT
AGACTCTAATTCCAAGTGTTTTGTCCCCACAGCGGAACATGCAGTCCTTA
AGGGCCTAAAGTCAAGGTGTTGAATGCGCGGGTTGATACAAGCTTCGTTT
TCGCAGGAGGATTTATTGTAGTGTTATACCACCCCATCGACACCACTTGA
AAAGAAAGCTATTTTTTTTTTCTGCCAGACCCCTTTTTGTTTTTGTACGT
CTGAGGGAAGAAAAGGCTGTCGTCTTACTCGCGATAAAAATGCGAGGCGC
GAATCGTAGTGAGGAAGGGGTGGGGTAAGAGCCTACTCAGTGACCCCGGA
TCTGAGTTACTACTGCAACAGGATGGAGAGAGAAAGGAAGGGCGAAGATA
GTTGGTGGGATGAGAATATATATACAGTATGTACTTCGTGTATGTGTACG
ATGAGGTGTGCCCTGCGCCATGTCCAGTAGTAATATTGTGTTTTTTTTTT
TTCAGATGTTGCGTGCAAAATTCGAGCCGAAATGTAATTGAAAAACAACC
TACTGCAACCCAATTTCCTTAGGTGCTGCTGCGTACTGTATGGGCCGACA
TCGCCTGTGTAAAGAATCGTCCTTTTGACCCTTGGTATTGCCAGAGGAGT
GACCGTCCTGTACCCTTCACGGGAAAATATGGAAACACACGTACGCAACT
GACGTACAAGCATCACCAACGCAGCTTGCCAAGCTGGGTATCGACCGTTC
TTGTCTATAACTCGCCGCTTACAATGGAGGAATTAAGTATTATCCTGAAA
CCCTGACTGTTTTTTTTTCTTCTTGTCTATATACTAGGTACGTCTAGACG
CCTTCGGCGTTTTCGTGACCATGGTCTAGTTTATGGCAGCGACCTACAGT
ACGTACTGCTGCGAGATCGCCATCAACGAAAATAGCAACAACACAGCAAC
AACAACCACAACGAAACCAACTAGCCATTTTTTTTTATGATGTTCGGAGC
ATCAGCAGCCTGTTCTGATGTTGCAACGGGAGCTATGGGCTAAAATTGAC
ACGACACGAAATTGGAACGTGCAAGTGTGGCGAGCTTAAGCTTTATTTTT
ACCAATCCGCCGGAGGATATAAAATCAAGATTGTACGGACACTAAACCTC
TACTGCTGTACCTCTCCTGCTGCGCACGCTTTGCTGTCCTCTCGGTGACA
TCACAGGCGATTTCTCGAGGAGTGCTCGCCGAGTCGCCGGTGGAATCCCT
CGAGCTCGCGGGCAACCTCCTGGACAAGACGGATTTTATGCAGATGGAAG
GCGTCGACGCCTTCTTGGCGAGGAGAGAAAAAAACAAAAACAGAAATCTC
CAGGGTGGCGGAATGCTGACGCTTTCCGTTTGCGGCCTCGACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10186:523..7067+

>mRNA_M-pyrifera_M_contig10186.393.1 ID=mRNA_M-pyrifera_M_contig10186.393.1|Name=mRNA_M-pyrifera_M_contig10186.393.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1794bp|location=Sequence derived from alignment at M-pyrifera_M_contig10186:523..7067+ (Macrocystis pyrifera P11B4 male)
ATGGGGAACAACGGATCGTCGCACGCATCGACCTTCTCTCGAGGCCAAGG
CGCCACGTCTGATATTCGGGATGCAATGTCAAGCTTGCCGGGGTCTCAAC
CTAAGAACAAGACGGGAAAATGGGGAACAACGGATCGTCGCACGCATCGA
CCTTCTCTCGAGGCCAAGGCGCCACGTCTGATATTCGGGATGCAATGTCA
AGCTTGCCGGGGTCTCAACCTAAGAACAAGACGGGAAAGAAGGTGACGGC
CCAAAAGATTAAAACGGCGGGAGCCACGGGGGTGTTGGCGCTCCAAGAGC
ACGGTCTGAAGCAGGTGCCAGACGACCTGTTTCTGCTCGTCAACTTAAGA
GAAGGTGACGGCCCAAAAGATTAAAACGGCGGGAGCCACGGGGGTGTTGG
CGCTCCAAGAGCACGGTCTGAAGCAGGTGCCAGACGACCTGTTTCTGCTC
GTCAACTTAAGAATGTTGAACATGTCGTCGAACTCTCTCCACGATCTGTC
GGAGGCGATCAGCACGCTAAAGAAGCTCAAGACGCTGCGACTCGATAGCA
ACCATCTCGTTATGTTGAACATGTCGTCGAACTCTCTCCACGATCTGTCG
GAGGCGATCAGCACGCTAAAGAAGCTCAAGACGCTGCGACTCGATAGCAA
CCATCTCGTTGCTCTCCCCGACCTCAGCACCCTTTCCGCCCTGACAGACA
TTTCAGCTGGAGGGAATCGGTTCCGTGGCCCCGAGGCCGTGAAAGGATTG
CCACTGTGCCTGACGAAGCTGGTCCTGCGAGAAAACAAGCTGGGGGAGGT
GCCGCTCGCGGTGACGAACGGCCTTCCCGCTCTACAGGCTCTCCCCGACC
TCAGCACCCTTTCCGCCCTGACAGACATTTCAGCTGGAGGGAATCGGTTC
CGTGGCCCCGAGGCCGTGAAAGGATTGCCACTGTGCCTGACGAAGCTGGT
CCTGCGAGAAAACAAGCTGGGGGAGGTGCCGCTCGCGGTGACGAACGGCC
TTCCCGCTCTACAGGTGCTCGACCTGTCGGCGAACGAGATCCAGGCCATA
ACTCCCCTATCCGCCGCCTTGCCGGCTCTGGCGGAGCTGATTCTGGACGA
GAACGCGATACGATCGCTGGGGGAGGAGGTTAGCGGGCTGCCGAAGCTGA
AGAAGCTCTCTGCCAGGTCTAACCGCATCGCGGCAGTAGACCCCTTCAGC
GGACAGCAGGCAAGAAAGAAAAATAAAGAAAGTGCTCGACCTGTCGGCGA
ACGAGATCCAGGCCATAACTCCCCTATCCGCCGCCTTGCCGGCTCTGGCG
GAGCTGATTCTGGACGAGAACGCGATACGATCGCTGGGGGAGGAGGTTAG
CGGGCTGCCGAAGCTGAAGAAGCTCTCTGCCAGGTCTAACCGCATCGCGG
CAGTAGACCCCTTCAGCGGACAGCAGGCAAGAAAGAAAAATAAAGAAATG
CTCGCCGAGTCGCCGGTGGAATCCCTCGAGCTCGCGGGCAACCTCCTGGA
CAAGACGGATTTTATGCAGATGGAAGGCGTCGACGCCTTCTTGGCGAGGA
GAGAAAAAAACAAAAACAGAAATCTCCAGGGTGGCGGAATGCTGACGCTT
TCCGTTTGCGGCCTCGACTAGTGCTCGCCGAGTCGCCGGTGGAATCCCTC
GAGCTCGCGGGCAACCTCCTGGACAAGACGGATTTTATGCAGATGGAAGG
CGTCGACGCCTTCTTGGCGAGGAGAGAAAAAAACAAAAACAGAAATCTCC
AGGGTGGCGGAATGCTGACGCTTTCCGTTTGCGGCCTCGACTAG
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