mRNA_M-pyrifera_M_contig101807.383.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101807.383.1
Unique NamemRNA_M-pyrifera_M_contig101807.383.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: A0A5A8DRR1_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DRR1_CAFRO)

HSP 1 Score: 80.5 bits (197), Expect = 2.220e-15
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    4 YGNLNCTYISHRIQYIAQQ-----DKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDAQGWKMD---GYDDFDSGYTNGYFLGAAVTARAAFSP 297
            YGN N TY+     ++A++     D R V++HGE+ Y+V  D+++GL  G LYGERRL DLR+LAA + A G  M    G + F SG    Y++G  V ARAA+ P
Sbjct:  415 YGNANLTYMFDFATWLAERSTARGDGREVVWHGESAYWVNYDIDVGLALGPLYGERRLNDLRWLAAQQAASGGGMAALRGQNVFASGSPWSYWVGNTVAARAAWDP 520          
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: A0A812R6H0_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812R6H0_SYMMI)

HSP 1 Score: 73.9 bits (180), Expect = 3.790e-13
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    4 YGNLNCTYISHRIQYIAQQDKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDAQGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSP 297
            YGN N   I   + + A +  R+V+F+GET Y+V +DV++ LF   LYG+RRL DLR +A  E     ++ G  +FDSG+   Y+L   VTARA++ P
Sbjct:   47 YGNKNFKDIEDYMLFEASRGNRSVVFYGETAYWVSVDVDVPLFL-PLYGQRRLHDLRRIAHSEKKLQVRIQGQMNFDSGWEWAYWLNNVVTARASWDP 143          
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: A0A7S4MHT9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MHT9_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 2.080e-12
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    4 YGNLNCTYISHRIQYIAQQDKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDAQGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSPTDPIQSS 318
            YGN N TY+   +  + Q  KR V+FHGET Y+V  D+++ LF   +YG  RL+D+R +A        +  G  +F SG+   Y+LG  +T  A + P + +  S
Sbjct:  398 YGNQNFTYMLEFL--VEQTGKREVIFHGETAYWVNYDIDVPLFLPPIYGANRLSDMRTIAKATTLASREAQGQMNFGSGWEWAYWLGDLLTCNAVWDPMEALDDS 500          
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: A0A0D2VTZ3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VTZ3_CAPO3)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    4 YGNLNCTYISHRIQYIAQQDKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDAQGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSP 297
            YGN N TY+   +   AQ++ R V++H ET Y+V  D+++ LF    Y   RL DLR +A  + A G  +DG   FDSG+   Y++   +TARA ++P
Sbjct:  225 YGNQNFTYMFDFMFKNAQKNVREVVYHPETAYWVNYDIDVPLFL-PYYALARLRDLRHIAGWQQATGSSIDGQMVFDSGWEYAYWMQDVLTARATWNP 321          
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: A0A0L0DBP2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBP2_THETB)

HSP 1 Score: 68.6 bits (166), Expect = 3.410e-11
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    4 YGNLNCTYISHRIQYIAQQDKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDAQGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSPTDPIQS 315
            YGNLN TY+     + A   +R V++H E+ Y+V  D+++ LF   +YG  RL DLR LA+   +    +DG   FDSG+  GY+L   V ARAA+ P+  I S
Sbjct:  421 YGNLNFTYMEAFTAWQAGLGEREVVYHCESAYWVNYDIDVPLFL-PVYGLNRLVDLRRLASSSPS----LDGQMVFDSGWEWGYWLHDVVVARAAYDPSLDIAS 519          
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: L8GEE1_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEE1_ACACA)

HSP 1 Score: 65.9 bits (159), Expect = 3.010e-10
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    4 YGNLNCTYISHRIQYIAQQDKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDAQGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSP 297
            YGN N +Y+   +++ A  D+R  ++HGET Y+V  D+++ LF   +Y   RL+DLR +AA       K  G  +F+SG+  GY+L   VTARA++ P
Sbjct:  431 YGNQNFSYMLDFLKFEA--DRRKTIYHGETAYWVNYDIDVPLFL-PIYAHGRLSDLRAIAAT------KTLGQINFNSGWEWGYWLSDVVTARASWDP 519          
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: A0A0K1PTI7_9DELT (Uncharacterized protein n=1 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1PTI7_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 7.660e-10
Identity = 42/106 (39.62%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    4 YGNLNCTYISHRIQYIAQQDKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDA--------QGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSP 297
            YGN +  Y+   I+  A+   R V+++ E+ Y+V  D+++ LF   LY +RRL+DLR +AA EDA         G  +DG   F SG+  GY+L   V ARAA+ P
Sbjct:  435 YGNTDFGYMRDFIR--AEAGSRRVIWYPESAYWVSFDIDVPLFL-PLYADRRLSDLRLIAADEDAGKLGLGPNAGKHIDGQLVFSSGWEWGYWLNDVVAARAAWQP 537          
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Match: A0A7V4GE51_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4GE51_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 3.210e-8
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   55 QQDKRTVLFHGETGYFVQMDVEIGLFQGALYGERRLADLRFLAAMEDA--------QGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSP 297
            Q  +R V++H E+ Y+V  D+++ LF   LY ERRL DLR LAA E A         G  M G   F SG+  GY+L   V ARAA+ P
Sbjct:  456 QAGRRPVVWHPESAYWVSFDIDVPLFL-PLYAERRLHDLRLLAADEAAGRMGRGEHAGAAMQGQVVFSSGWEWGYWLPDVVAARAAWDP 543          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101807.383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A5A8DRR1_CAFRO2.220e-1544.34Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A812R6H0_SYMMI3.790e-1342.86Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S4MHT9_9EUKA2.080e-1236.19Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A0D2VTZ3_CAPO31.310e-1139.80Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A0L0DBP2_THETB3.410e-1141.35Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
L8GEE1_ACACA3.010e-1039.80Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A0K1PTI7_9DELT7.660e-1039.62Uncharacterized protein n=1 Tax=Labilithrix luteol... [more]
A0A7V4GE51_9DELT3.210e-843.82Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101807contigM-pyrifera_M_contig101807:5..608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score71.2
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog192875.XP_004347074.1
Hectar predicted targeting categoryother localisation
EggNOG OGs28IHR@1,2RAJW@2759,39Y6Z@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.9004877-CDS-M-pyrifera_M_contig101807:4..1121622815517.9004877-CDS-M-pyrifera_M_contig101807:4..112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101807 5..112 +
1692277446.5059187-CDS-M-pyrifera_M_contig101807:4..1121692277446.5059187-CDS-M-pyrifera_M_contig101807:4..112Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101807 5..112 +
1622815517.9118865-CDS-M-pyrifera_M_contig101807:386..6081622815517.9118865-CDS-M-pyrifera_M_contig101807:386..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101807 387..608 +
1692277446.5185995-CDS-M-pyrifera_M_contig101807:386..6081692277446.5185995-CDS-M-pyrifera_M_contig101807:386..608Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101807 387..608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101807.383.1prot_M-pyrifera_M_contig101807.383.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101807 5..608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101807.383.1

>prot_M-pyrifera_M_contig101807.383.1 ID=prot_M-pyrifera_M_contig101807.383.1|Name=mRNA_M-pyrifera_M_contig101807.383.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
VYGNLNCTYISHRIQYIAQQDKRTVLFHGETGYFVQMDVEIGLFQGALYG
ERRLADLRFLAAMEDAQGWKMDGYDDFDSGYTNGYFLGAAVTARAAFSPT
DPIQSSPTSS
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mRNA from alignment at M-pyrifera_M_contig101807:5..608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101807.383.1 ID=mRNA_M-pyrifera_M_contig101807.383.1|Name=mRNA_M-pyrifera_M_contig101807.383.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=604bp|location=Sequence derived from alignment at M-pyrifera_M_contig101807:5..608+ (Macrocystis pyrifera P11B4 male)
GTCTACGGGAACCTCAACTGCACCTACATCTCCCACAGGATCCAGTACAT CGCCCAGCAGGACAAGAGAACAGTGCTCTTCCACGGAGAAACAGGCTACT TCGTGCAGGTAAAGATGAGGAGGGGGTGAGGGGGAGGTGAAAGGAACAAG CACACATGTCCTTCTCCTCATTTTCTTTGAAACACTTGGGTGCTTTGGGG TTTGGGTTCTCTTGTTTCTTGTTTGGTTTAAGCTGTTGTTGTTGGAGATC CTTTGGTGGTGATGGTCTTCTCGTCCTCCTCCTCCTCTTCCTCCTCTTCC TCCTTCTTCCACCTCCATTTTCCTTCCTCTTCATCCACCCCCTCTTCTTT TTTTTCTTTTCTTATTCTCTTGCGTGTTGCAGATGGACGTGGAGATTGGC CTGTTCCAGGGTGCGTTGTATGGGGAGCGTCGCTTGGCGGATTTGCGGTT TTTGGCGGCGATGGAGGATGCGCAGGGGTGGAAGATGGACGGGTACGACG ATTTCGACTCGGGGTACACCAACGGCTACTTTCTGGGAGCTGCAGTCACA GCAAGGGCAGCCTTCTCTCCAACCGACCCAATCCAATCCTCCCCTACTTC CTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101807:5..608+

>mRNA_M-pyrifera_M_contig101807.383.1 ID=mRNA_M-pyrifera_M_contig101807.383.1|Name=mRNA_M-pyrifera_M_contig101807.383.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig101807:5..608+ (Macrocystis pyrifera P11B4 male)
GTCTACGGGAACCTCAACTGCACCTACATCTCCCACAGGATCCAGTACAT
CGCCCAGCAGGACAAGAGAACAGTGCTCTTCCACGGAGAAACAGGCTACT
TCGTGCAGGTCTACGGGAACCTCAACTGCACCTACATCTCCCACAGGATC
CAGTACATCGCCCAGCAGGACAAGAGAACAGTGCTCTTCCACGGAGAAAC
AGGCTACTTCGTGCAGATGGACGTGGAGATTGGCCTGTTCCAGGGTGCGT
TGTATGGGGAGCGTCGCTTGGCGGATTTGCGGTTTTTGGCGGCGATGGAG
GATGCGCAGGGGTGGAAGATGGACGGGTACGACGATTTCGACTCGGGGTA
CACCAACGGCTACTTTCTGGGAGCTGCAGTCACAGCAAGGGCAGCCTTCT
CTCCAACCGACCCAATCCAATCCTCCCCTACTTCCTCCATGGACGTGGAG
ATTGGCCTGTTCCAGGGTGCGTTGTATGGGGAGCGTCGCTTGGCGGATTT
GCGGTTTTTGGCGGCGATGGAGGATGCGCAGGGGTGGAAGATGGACGGGT
ACGACGATTTCGACTCGGGGTACACCAACGGCTACTTTCTGGGAGCTGCA
GTCACAGCAAGGGCAGCCTTCTCTCCAACCGACCCAATCCAATCCTCCCC
TACTTCCTCC
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