mRNA_M-pyrifera_M_contig101803.382.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101803.382.1
Unique NamemRNA_M-pyrifera_M_contig101803.382.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: A0A8C8M248_ONCTS (Nuclear receptor coactivator 7-like n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C8M248_ONCTS)

HSP 1 Score: 64.3 bits (155), Expect = 6.540e-9
Identity = 47/160 (29.38%), Postives = 73/160 (45.62%), Query Frame = 1
Query:    7 SSVLQDLSPEAAGVLHKRLPTVLQAAEWLRVFSLAQDGASLRTLYRQCRSASDTVLF-LRTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAAE---DALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPL 474
            S++LQD   E    L  RLP  +Q   W  V+S A+ G SL+TLYR        VL  ++     + G Y++ P+      +GT + F+F    P   + C     WT      +  Y  +   D+L +GG   +  +W+D +L    T+ C  F + PL
Sbjct:  618 STLLQDTHIEK---LACRLPARVQGYPWRLVYSTAEHGTSLKTLYRSLLDVDSPVLLVIKDMDNQLFGGYSTHPFRVSEHCYGTGETFLFSF-CPEIKMYC-----WTG-----ENSYFVKGNIDSLQMGGGGGQIGLWVDADLYHGTTSSCATFHNQPL 763          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: A0A8H7S001_9FUNG (TLDc domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S001_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 3.710e-8
Identity = 44/148 (29.73%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   25 LSPEAAGVLHKRLPTVLQAA-EWLRVFSLAQDGASLRTLYRQCRS-ASDTVLFLRTSTGLIMGCYASEPW-TPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAAEDALAVGGTAPRAAIWIDQNLAEAATAPCPAF 459
            L+ E +  L   LP   + A +W  ++SL Q GASL TLYRQCR      +L ++ +   I G + +EP+ +  +  +GT + F++   +    +Q FP   WT        + +  + +A+GG   +  +WI+ +L    + PCP F
Sbjct:  307 LNEEISEKLRSYLPRRHRLAMKWSLLYSLDQHGASLTTLYRQCRPYRGPCILAIKDADDSIFGAFLNEPFKSNNASYYGTGECFLWKYCAKSGNIQVFP---WTGKNEY--MILSETEFIAIGGGNGKFGLWINSDLEHGHSEPCPTF 449          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: UPI0010A2FF03 (nuclear receptor coactivator 7-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A2FF03)

HSP 1 Score: 60.8 bits (146), Expect = 3.740e-8
Identity = 46/161 (28.57%), Postives = 75/161 (46.58%), Query Frame = 1
Query:    7 SSVLQDLSPEAAGVLHKRLPTVLQAAEWLRVFSLAQDGASLRTLYRQCRSASDTVLFL--RTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAAE---DALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPL 474
            S +L+D   E+   L K LP  +Q   W  V+S A+ G SL+TLYR+  S    VL          + G ++S P+      +GT + F++   SPH  +       W+      +  Y  +   D+L +GG   R  +W+D +L + ++  C  F + PL
Sbjct:   54 SHILEDHHIES---LVKHLPARIQVHSWRLVYSTAEHGTSLKTLYRRMASIDSPVLLAIKDMDNQQVFGAFSSHPFRVSECCYGTGETFLYTF-SPHFSI-----FRWSG-----ENCYFVKGFLDSLQMGGGGGRFGLWLDADLHQGSSFSCHTFHNVPL 200          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: A0A3B1J1X4_ASTMX (TLDc domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J1X4_ASTMX)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-7
Identity = 43/142 (30.28%), Postives = 66/142 (46.48%), Query Frame = 1
Query:   61 LPTVLQAAEWLRVFSLAQDGASLRTLYRQCRSASDTVLFL-RTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAAE---DALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPL 474
            LP  +Q   W  V+S A+ G SLRTLYR+       VL L +     + G ++S+P+   +  +GT + F+F    P     C     W+      +  Y      D+L +GG  P   +W+D +L   +T  C  FR+ PL
Sbjct:   74 LPARVQGTVWELVYSTAEHGTSLRTLYRKTAPIDRPVLLLIQDIHNQVFGAFSSDPFRVSNSCYGTGETFLFTF-DPEFKTFC-----WSG-----ENSYFVRGFLDSLQMGGGGPFG-LWLDADLCRGSTFSCNTFRNQPL 203          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: UPI000BBD7E2D (nuclear receptor coactivator 7-like isoform X1 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBD7E2D)

HSP 1 Score: 59.7 bits (143), Expect = 1.500e-7
Identity = 42/142 (29.58%), Postives = 65/142 (45.77%), Query Frame = 1
Query:   61 LPTVLQAAEWLRVFSLAQDGASLRTLYRQCRSASDTVLFL-RTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAAE---DALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPL 474
            LP  +Q   W  V+S A+ G SLRTLYR+       VL L +     + G ++S+P+   +  +GT + F+F    P     C     W+      +  Y      D+L +GG      +W+D +L   +T  C  FR+ PL
Sbjct:  126 LPARVQGTVWELVYSTAEHGTSLRTLYRKTAPIDRPVLLLIQDIHNQVFGAFSSDPFRVSNSCYGTGETFLFTF-DPEFKTFC-----WSG-----ENSYFVRGFLDSLQMGGGGGPFGLWLDADLCRGSTFSCNTFRNQPL 256          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: A0A2T7NCA9_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NCA9_POMCA)

HSP 1 Score: 60.1 bits (144), Expect = 1.870e-7
Identity = 45/161 (27.95%), Postives = 72/161 (44.72%), Query Frame = 1
Query:   25 LSPEAAGVLHKRLPTVLQAAEWLRVFSLAQDGASLRTLYRQCRSASDTVLFLRTSTGLIMGCYASEPWTPR---SR---LFGTAQVFVFLLPSPHHPLQCFPPHPW-----TSHPPVPKPLYAAEDALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPL 474
            LSP+   V+   LPT     + + +F+ A+ G +LRTLY     +  T++ ++T+   I G + S PW  R   SR    FGT + F+F L    +  +      W     T  P       A +++    G     AI +D+ +    T  C  F++PPL
Sbjct:  543 LSPDMLAVVWAWLPTRFSIMQPVLLFTSAEHGTTLRTLYSMSEYSPYTIIVIKTTADDIFGAFCSGPWYERRSNSRNICYFGTGETFLFTLSPERNKYE------WVGILSTDIPKTANMFLAGDNSCLTIGGGNGEAISLDETMEHCRTETCDTFKNPPL 697          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: UPI001E6723DE (oxidation resistance protein 1-like isoform X1 n=7 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6723DE)

HSP 1 Score: 60.1 bits (144), Expect = 1.990e-7
Identity = 48/167 (28.74%), Postives = 70/167 (41.92%), Query Frame = 1
Query:   16 LQDLSPEAAGV-----------LHKRLPTVLQAAEWLRVFSLAQDGASLRTLYRQCRSASDTV-LFLRTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAA--EDALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPL 474
            L+   PE  GV           ++K+LP   Q   W  VFS AQ G SL +LYR+       + LF++ +   I G   S         +GT + F+F     H   Q FP   WT         +     ++L VGG      +W+D +L +  T PC  + +P L
Sbjct:  942 LEAFLPEICGVSEIITDAVRKNMYKKLPARAQGYSWKLVFSTAQHGFSLNSLYRKMNEIDTPIMLFIQDTHQNIFGAVVSCSLRVSELYYGTGESFLFSF---HPEFQVFP---WTGE----NTFFVKGNNESLVVGGGDGNFGLWLDGDLYQGRTQPCKTYNNPQL 1098          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: A0A091GZE4_9AVES (TLD domain-containing protein 2 (Fragment) n=1 Tax=Cuculus canorus TaxID=55661 RepID=A0A091GZE4_9AVES)

HSP 1 Score: 57.4 bits (137), Expect = 2.640e-7
Identity = 45/145 (31.03%), Postives = 67/145 (46.21%), Query Frame = 1
Query:   49 LHKRLPTVLQAAEWLRVFSLAQDGASLRTLYR-QCRSASDTVLFLRTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAAEDALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPLDQ 480
            L   LP  L    W  ++S AQDG SLRTLYR   +  S  +L +R +     G +++      S  +GT + F+F   SP   L+ F    WT        +    D L VGG + R  +W+D++L    + PC  F +  L +
Sbjct:    4 LGPHLPLRLTQQPWRLLYSTAQDGFSLRTLYRCGAQPGSPALLLIRDTEAQAFGAFSATTICCSSSFYGTGETFLFSF-SPE--LKVFK---WTGRNNF--FMKGDVDLLMVGGGSGRFGLWLDRDLHHGGSHPCETFNNETLSR 140          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: UPI00051C0699 (TLD domain-containing protein 2 n=1 Tax=Cuculus canorus TaxID=55661 RepID=UPI00051C0699)

HSP 1 Score: 58.2 bits (139), Expect = 3.780e-7
Identity = 48/159 (30.19%), Postives = 74/159 (46.54%), Query Frame = 1
Query:    7 SSVLQDLSPEAAGVLHKRLPTVLQAAEWLRVFSLAQDGASLRTLYR-QCRSASDTVLFLRTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPLQCFPPHPWTSHPPVPKPLYAAEDALAVGGTAPRAAIWIDQNLAEAATAPCPAFRSPPLDQ 480
            S++L+D   +  G     LP  L    W  ++S AQDG SLRTLYR   +  S  +L +R +     G +++      S  +GT + F+F   SP   L+ F    WT        +    D L VGG + R  +W+D++L    + PC  F +  L +
Sbjct:   67 SNILRDGEIQELG---PHLPLRLTQQPWRLLYSTAQDGFSLRTLYRCGAQPGSPALLLIRDTEAQAFGAFSATTICCSSSFYGTGETFLFSF-SPE--LKVFK---WTGRNNF--FMKGDVDLLMVGGGSGRFGLWLDRDLHHGGSHPCETFNNETLSR 214          
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Match: A0A1X2GHB5_9FUNG (TLD-domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GHB5_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 4.580e-7
Identity = 40/135 (29.63%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   64 PTVLQAAE-WLRVFSLAQDGASLRTLYRQCRSASDTVLF-LRTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPH-HPLQCFPPHPWTSHPPVPKPLYAAEDALAVGGTAPRAAIWIDQNLAEAATAPCPAF 459
            P+ + AA  W  ++SLA DG S++TLY + +     +L  +RT+   ++G Y SEP  P  + +G+ + F++   S H H L+ +P   WT        +Y+ +D +A+GG   +  +++  NL    +  C  F
Sbjct:  101 PSRIHAAHHWHMLYSLANDGCSIQTLYSRAKECHGPMLLVIRTTEDEVIGAYLSEPLKPSRQYYGSGECFLWK--SVHNHSLKVYP---WTGANEY--LIYSNQDFIAIGGGEGQVGLYLHGNLFHGHSQRCSTF 228          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101803.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C8M248_ONCTS6.540e-929.38Nuclear receptor coactivator 7-like n=2 Tax=Oncorh... [more]
A0A8H7S001_9FUNG3.710e-829.73TLDc domain-containing protein n=1 Tax=Mucor circi... [more]
UPI0010A2FF033.740e-828.57nuclear receptor coactivator 7-like n=1 Tax=Dentic... [more]
A0A3B1J1X4_ASTMX1.260e-730.28TLDc domain-containing protein n=1 Tax=Astyanax me... [more]
UPI000BBD7E2D1.500e-729.58nuclear receptor coactivator 7-like isoform X1 n=2... [more]
A0A2T7NCA9_POMCA1.870e-727.95Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
UPI001E6723DE1.990e-728.74oxidation resistance protein 1-like isoform X1 n=7... [more]
A0A091GZE4_9AVES2.640e-731.03TLD domain-containing protein 2 (Fragment) n=1 Tax... [more]
UPI00051C06993.780e-730.19TLD domain-containing protein 2 n=1 Tax=Cuculus ca... [more]
A0A1X2GHB5_9FUNG4.580e-729.63TLD-domain-containing protein n=1 Tax=Hesseltinell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101803contigM-pyrifera_M_contig101803:88..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.6
Seed ortholog evalue3.8e-13
Seed eggNOG ortholog3067.XP_002946583.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.domain in TBC and LysM domain containing proteins
EggNOG OGs34I87@3041,37HP6@33090,COG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size507
Cds size507
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.8647165-CDS-M-pyrifera_M_contig101803:87..5941622815517.8647165-CDS-M-pyrifera_M_contig101803:87..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101803 88..594 +
1692277446.4805973-CDS-M-pyrifera_M_contig101803:87..5941692277446.4805973-CDS-M-pyrifera_M_contig101803:87..594Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101803 88..594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101803.382.1prot_M-pyrifera_M_contig101803.382.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101803 88..594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101803.382.1

>prot_M-pyrifera_M_contig101803.382.1 ID=prot_M-pyrifera_M_contig101803.382.1|Name=mRNA_M-pyrifera_M_contig101803.382.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
MGSSVLQDLSPEAAGVLHKRLPTVLQAAEWLRVFSLAQDGASLRTLYRQC
RSASDTVLFLRTSTGLIMGCYASEPWTPRSRLFGTAQVFVFLLPSPHHPL
QCFPPHPWTSHPPVPKPLYAAEDALAVGGTAPRAAIWIDQNLAEAATAPC
PAFRSPPLDQGRGEAGVMG
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mRNA from alignment at M-pyrifera_M_contig101803:88..594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101803.382.1 ID=mRNA_M-pyrifera_M_contig101803.382.1|Name=mRNA_M-pyrifera_M_contig101803.382.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig101803:88..594+ (Macrocystis pyrifera P11B4 male)
ATGGGGTCGTCGGTATTGCAGGATTTGTCCCCGGAAGCTGCTGGAGTATT GCACAAACGACTGCCAACGGTATTGCAGGCTGCAGAGTGGCTCCGCGTAT TTTCTCTGGCGCAAGATGGGGCTTCTCTTCGAACTCTGTACCGCCAGTGT CGCTCTGCTTCCGACACTGTGCTGTTCTTGCGCACCTCGACGGGCCTCAT CATGGGCTGCTATGCCTCAGAGCCTTGGACTCCCCGATCTCGGCTCTTTG GCACCGCCCAAGTGTTCGTCTTCCTGCTCCCTTCGCCCCACCACCCGCTC CAGTGCTTCCCACCACACCCTTGGACCTCCCACCCACCCGTGCCCAAACC CCTCTACGCCGCAGAAGATGCACTCGCCGTGGGAGGCACCGCCCCAAGGG CGGCCATCTGGATCGACCAAAACCTCGCAGAGGCAGCCACCGCCCCCTGC CCCGCCTTCCGGTCGCCGCCTCTCGACCAGGGCAGAGGAGAAGCCGGAGT CATGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101803:88..594+

>mRNA_M-pyrifera_M_contig101803.382.1 ID=mRNA_M-pyrifera_M_contig101803.382.1|Name=mRNA_M-pyrifera_M_contig101803.382.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig101803:88..594+ (Macrocystis pyrifera P11B4 male)
ATGGGGTCGTCGGTATTGCAGGATTTGTCCCCGGAAGCTGCTGGAGTATT
GCACAAACGACTGCCAACGGTATTGCAGGCTGCAGAGTGGCTCCGCGTAT
TTTCTCTGGCGCAAGATGGGGCTTCTCTTCGAACTCTGTACCGCCAGTGT
CGCTCTGCTTCCGACACTGTGCTGTTCTTGCGCACCTCGACGGGCCTCAT
CATGGGCTGCTATGCCTCAGAGCCTTGGACTCCCCGATCTCGGCTCTTTG
GCACCGCCCAAGTGTTCGTCTTCCTGCTCCCTTCGCCCCACCACCCGCTC
CAGTGCTTCCCACCACACCCTTGGACCTCCCACCCACCCGTGCCCAAACC
CCTCTACGCCGCAGAAGATGCACTCGCCGTGGGAGGCACCGCCCCAAGGG
CGGCCATCTGGATCGACCAAAACCTCGCAGAGGCAGCCACCGCCCCCTGC
CCCGCCTTCCGGTCGCCGCCTCTCGACCAGGGCAGAGGAGAAGCCGGAGT
CATGGGAATGGGGTCGTCGGTATTGCAGGATTTGTCCCCGGAAGCTGCTG
GAGTATTGCACAAACGACTGCCAACGGTATTGCAGGCTGCAGAGTGGCTC
CGCGTATTTTCTCTGGCGCAAGATGGGGCTTCTCTTCGAACTCTGTACCG
CCAGTGTCGCTCTGCTTCCGACACTGTGCTGTTCTTGCGCACCTCGACGG
GCCTCATCATGGGCTGCTATGCCTCAGAGCCTTGGACTCCCCGATCTCGG
CTCTTTGGCACCGCCCAAGTGTTCGTCTTCCTGCTCCCTTCGCCCCACCA
CCCGCTCCAGTGCTTCCCACCACACCCTTGGACCTCCCACCCACCCGTGC
CCAAACCCCTCTACGCCGCAGAAGATGCACTCGCCGTGGGAGGCACCGCC
CCAAGGGCGGCCATCTGGATCGACCAAAACCTCGCAGAGGCAGCCACCGC
CCCCTGCCCCGCCTTCCGGTCGCCGCCTCTCGACCAGGGCAGAGGAGAAG
CCGGAGTCATGGGA
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