mRNA_M-pyrifera_M_contig101800.381.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101800.381.1
Unique NamemRNA_M-pyrifera_M_contig101800.381.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A0A5A8CVK8_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVK8_CAFRO)

HSP 1 Score: 371 bits (952), Expect = 4.970e-126
Identity = 182/219 (83.11%), Postives = 198/219 (90.41%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HVVVGTPGRV DMI RG  +V NLKIFCLDEADQMLDRGFKDQIYEIF CGLPKDMQV+LFSATMP  ALELT KFM  P  ILVK++ELTLDGIKQFY++V++E++KLDTLCDLYETL ITQ+IIYCNTRRKVD LVE+M  R FTVSATHGEME +DRE IL+EFRSGA+RVLITTDLLARGIDVQQVS+VINYDLPTNRENYIHRIGR GRFGRKG
Sbjct:  156 HVVVGTPGRVQDMITRGVFDVSNLKIFCLDEADQMLDRGFKDQIYEIFSCGLPKDMQVILFSATMPNVALELTDKFMREPKRILVKRDELTLDGIKQFYVNVQKEDWKLDTLCDLYETLTITQSIIYCNTRRKVDMLVEQMTARSFTVSATHGEMEQRDREAILREFRSGATRVLITTDLLARGIDVQQVSMVINYDLPTNRENYIHRIGRSGRFGRKG 374
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BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: E2LA23_MONPE (Uncharacterized protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LA23_MONPE)

HSP 1 Score: 353 bits (907), Expect = 5.580e-121
Identity = 173/219 (79.00%), Postives = 196/219 (89.50%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HVVVGTPGRVYDMI R AL+ D++KIFCLDEAD+ML RGFKDQIYE+F+  LP+D QVVL SATMP + LE+T KFM  P  ILVK++ELTL+GIKQFYI VE+EE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM  R+FTVSA HG+ME K RE+++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG
Sbjct:   53 HVVVGTPGRVYDMINRRALKSDSIKIFCLDEADEMLSRGFKDQIYEVFQL-LPQDTQVVLLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 270
[Close]
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: D8PU22_SCHCM (ATP-dependent RNA helicase eIF4A n=5 Tax=Agaricomycetidae TaxID=452333 RepID=D8PU22_SCHCM)

HSP 1 Score: 357 bits (915), Expect = 1.340e-120
Identity = 175/219 (79.91%), Postives = 196/219 (89.50%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HVVVGTPGRV+DMI R AL  DN+KIFCLDEAD+ML RGFKDQIYE+F+  LP+D+QVVL SATMP E LE+T KFM  P  ILVK++ELTL+GIKQFYI VEREE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM  R+FTVSA HG+ME K RE+++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG
Sbjct:  144 HVVVGTPGRVHDMINRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQL-LPQDIQVVLLSATMPAEVLEVTKKFMREPVRILVKRDELTLEGIKQFYIAVEREEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 361
[Close]
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A0A0W0FP67_9AGAR (ATP-dependent RNA helicase eIF4A n=1 Tax=Moniliophthora roreri TaxID=221103 RepID=A0A0W0FP67_9AGAR)

HSP 1 Score: 356 bits (914), Expect = 1.610e-120
Identity = 174/219 (79.45%), Postives = 196/219 (89.50%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HVVVGTPGRVYDMI R AL+ DN+KIFCLDEAD+ML RGFKDQIYE+F+  LP+D QVVL SATMP + LE+T KFM  P  ILVK++ELTL+GIKQFYI VE+EE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM  R+FTVSA HG+ME K RE+++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG
Sbjct:  142 HVVVGTPGRVYDMINRRALKADNIKIFCLDEADEMLSRGFKDQIYEVFQL-LPQDTQVVLLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 359
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BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A0A2A9NFG1_9AGAR (ATP-dependent RNA helicase eIF4A n=2 Tax=Agaricales TaxID=5338 RepID=A0A2A9NFG1_9AGAR)

HSP 1 Score: 355 bits (910), Expect = 2.890e-119
Identity = 174/219 (79.45%), Postives = 196/219 (89.50%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HVVVGTPGRVYDMI R AL+ D++KIFCLDEAD+ML RGFKDQIYE+F+  LP+D QVVL SATMP + LE+T KFM  P  ILVK++ELTL+GIKQFYI VE+EE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM  R+FTVSA HG+ME K REL++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG
Sbjct:  185 HVVVGTPGRVYDMINRRALKTDHIKIFCLDEADEMLSRGFKDQIYEVFQL-LPQDTQVVLLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMHGREFTVSAMHGDMEQKQRELLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 402
[Close]
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A8PG49_COPC7 (ATP-dependent RNA helicase eIF4A n=23 Tax=Agaricomycotina TaxID=5302 RepID=A8PG49_COPC7)

HSP 1 Score: 352 bits (903), Expect = 8.860e-119
Identity = 172/219 (78.54%), Postives = 194/219 (88.58%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HVVVGTPGRVYDMI R A   D++KIFCLDEAD+ML RGFKDQIY++F+  LP+D QVVL SATMP E LE+T KFM  P  ILVK++ELTL+GIKQFYI VE+EE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM  R+FTVSA HG+ME K RE+++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG
Sbjct:  144 HVVVGTPGRVYDMINRRAFRTDHIKIFCLDEADEMLSRGFKDQIYDVFQL-LPQDTQVVLLSATMPAEVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 361
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BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A0A812YS69_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YS69_9DINO)

HSP 1 Score: 350 bits (899), Expect = 1.480e-118
Identity = 171/218 (78.44%), Postives = 195/218 (89.45%), Query Frame = 1 
Query:    4 VVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            VVVGTPGRV DMIQR  L + NLK+F LDEAD MLDRGFK+QIYE+F  GLPKD QV LFSATMP +ALELT KFM+ PA ILVK++ELTLDGIKQFY+ V++E +KL+TLCDLY+TL ITQAIIYCNTRRKVDWL ++M++RD  VSATHG+ME ++RELI+KEFRSG++RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR GRFGRKG
Sbjct:  141 VVVGTPGRVNDMIQRNFLSLKNLKLFVLDEADTMLDRGFKEQIYEVFSSGLPKDTQVALFSATMPVDALELTKKFMNDPAIILVKRDELTLDGIKQFYVQVQQEAWKLETLCDLYDTLTITQAIIYCNTRRKVDWLTDEMRKRDHAVSATHGDMEQRERELIMKEFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKG 358
[Close]
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A0A8H5H7T9_9AGAR (ATP-dependent RNA helicase eIF4A n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5H7T9_9AGAR)

HSP 1 Score: 352 bits (904), Expect = 1.500e-118
Identity = 172/219 (78.54%), Postives = 194/219 (88.58%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HVVVGTPGRVYDMI R AL  DN+K+FCLDEAD+ML RGFKDQIYE+F+  LP D QVVL SATMP + LE+T KFM  P  ILVK++ELTL+GIKQFYI VE+EE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM  R+FTVSA HG+ME K RE+++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLP+NRENYIHRIGRGGRFGRKG
Sbjct:  171 HVVVGTPGRVYDMINRRALRTDNIKLFCLDEADEMLSRGFKDQIYEVFQL-LPHDTQVVLLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMYSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKG 388
[Close]
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A0A5M3N050_CONPW (ATP-dependent RNA helicase eIF4A n=4 Tax=Agaricomycetes TaxID=155619 RepID=A0A5M3N050_CONPW)

HSP 1 Score: 351 bits (900), Expect = 2.290e-118
Identity = 171/219 (78.08%), Postives = 195/219 (89.04%), Query Frame = 1 
Query:    1 HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            HV+VGTPGRVYDMI R AL+ D++KIFCLDEAD+ML RGFK+QIYE+F+  LP D QVVL SATMP + LE+T KFM  P  ILVK++ELTL+GIKQFYI VE+EE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM  R+FTVSA HG+ME K RE+++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG
Sbjct:  144 HVIVGTPGRVYDMINRRALKSDHIKIFCLDEADEMLSRGFKEQIYELFQL-LPSDTQVVLLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 361
[Close]
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Match: A0A369JL95_HYPMA (ATP-dependent RNA helicase eIF4A n=87 Tax=Eukaryota TaxID=2759 RepID=A0A369JL95_HYPMA)

HSP 1 Score: 350 bits (897), Expect = 7.200e-118
Identity = 170/218 (77.98%), Postives = 195/218 (89.45%), Query Frame = 1 
Query:    4 VVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRCGLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYIDVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSATHGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 657
            +VVGTPGRV+DMI R AL  DN++IFCLDEAD+ML RGFKDQIYE+F+  LP+D QVVL SATMP + LE+T KFM  P  ILVK++ELTL+GIKQFYI VE+EE+KLDTLCDLYET+ ITQA+I+CNTRRKVDWL EKM+ R+FTVSA HG+ME K RE+++KEFRSG+SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG
Sbjct:  145 IVVGTPGRVFDMINRRALRTDNIRIFCLDEADEMLSRGFKDQIYEVFQL-LPQDTQVVLLSATMPADVLEVTKKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKVDWLTEKMRAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG 361
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101800.381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CVK8_CAFRO4.970e-12683.11Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
E2LA23_MONPE5.580e-12179.00Uncharacterized protein (Fragment) n=1 Tax=Monilio... [more]
D8PU22_SCHCM1.340e-12079.91ATP-dependent RNA helicase eIF4A n=5 Tax=Agaricomy... [more]
A0A0W0FP67_9AGAR1.610e-12079.45ATP-dependent RNA helicase eIF4A n=1 Tax=Monilioph... [more]
A0A2A9NFG1_9AGAR2.890e-11979.45ATP-dependent RNA helicase eIF4A n=2 Tax=Agaricale... [more]
A8PG49_COPC78.860e-11978.54ATP-dependent RNA helicase eIF4A n=23 Tax=Agaricom... [more]
A0A812YS69_9DINO1.480e-11878.44Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A8H5H7T9_9AGAR1.500e-11878.54ATP-dependent RNA helicase eIF4A n=1 Tax=Tricholom... [more]
A0A5M3N050_CONPW2.290e-11878.08ATP-dependent RNA helicase eIF4A n=4 Tax=Agaricomy... [more]
A0A369JL95_HYPMA7.200e-11877.98ATP-dependent RNA helicase eIF4A n=87 Tax=Eukaryot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101800contigM-pyrifera_M_contig101800:3..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score358.2
Seed ortholog evalue2.7e-96
Seed eggNOG ortholog5334.XP_003035589.1
Preferred nameTIF1
KEGG koko:K03257
KEGG Pathwayko03013,map03013
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003743,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010608,GO:0016020,GO:0016070,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.Type III restriction enzyme, res subunit
EggNOG OGs225PH@155619,38CTS@33154,3NUYA@4751,3V00X@5204,3W355@5338,COG0513@1,KOG0327@2759
COG Functional cat.A
Best tax levelAgaricales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019,ko04147
Exons1
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.8205385-CDS-M-pyrifera_M_contig101800:2..6591622815517.8205385-CDS-M-pyrifera_M_contig101800:2..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101800 3..659 +
1692277446.46667-CDS-M-pyrifera_M_contig101800:2..6591692277446.46667-CDS-M-pyrifera_M_contig101800:2..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101800 3..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101800.381.1prot_M-pyrifera_M_contig101800.381.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101800 3..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101800.381.1

>prot_M-pyrifera_M_contig101800.381.1 ID=prot_M-pyrifera_M_contig101800.381.1|Name=mRNA_M-pyrifera_M_contig101800.381.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
HVVVGTPGRVYDMIQRGALEVDNLKIFCLDEADQMLDRGFKDQIYEIFRC
GLPKDMQVVLFSATMPTEALELTTKFMHSPATILVKKEELTLDGIKQFYI
DVEREEFKLDTLCDLYETLAITQAIIYCNTRRKVDWLVEKMQERDFTVSA
THGEMEMKDRELILKEFRSGASRVLITTDLLARGIDVQQVSLVINYDLPT
NRENYIHRIGRGGRFGRKG
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mRNA from alignment at M-pyrifera_M_contig101800:3..659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101800.381.1 ID=mRNA_M-pyrifera_M_contig101800.381.1|Name=mRNA_M-pyrifera_M_contig101800.381.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=657bp|location=Sequence derived from alignment at M-pyrifera_M_contig101800:3..659+ (Macrocystis pyrifera P11B4 male)
CACGTGGTTGTGGGTACGCCAGGGCGTGTGTACGACATGATCCAGCGTGG
CGCTCTCGAGGTGGACAACCTCAAGATCTTTTGCCTCGACGAAGCCGACC
AAATGTTGGACCGCGGATTCAAGGACCAGATCTACGAAATCTTCCGCTGT
GGCTTGCCCAAGGACATGCAAGTCGTGTTGTTCAGTGCCACCATGCCCAC
TGAGGCCCTGGAGCTCACCACCAAGTTCATGCACTCTCCAGCCACCATCC
TCGTCAAGAAGGAGGAGCTCACCCTCGACGGAATCAAGCAGTTCTACATT
GACGTGGAACGCGAAGAATTCAAGCTCGACACCCTATGCGACCTCTACGA
AACCCTCGCCATCACCCAGGCCATCATCTACTGCAACACGCGCCGCAAGG
TCGACTGGCTCGTCGAAAAGATGCAAGAGCGTGACTTCACAGTCTCCGCC
ACCCACGGAGAGATGGAAATGAAGGACCGTGAACTCATCCTCAAGGAATT
CCGTTCCGGAGCCTCCCGTGTCTTGATCACCACCGACTTGCTCGCGCGAG
GCATCGACGTGCAACAGGTCTCCCTCGTCATCAACTACGACCTGCCCACC
AACCGAGAGAACTATATCCACCGCATCGGACGTGGTGGACGCTTTGGTCG
AAAAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101800:3..659+

>mRNA_M-pyrifera_M_contig101800.381.1 ID=mRNA_M-pyrifera_M_contig101800.381.1|Name=mRNA_M-pyrifera_M_contig101800.381.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig101800:3..659+ (Macrocystis pyrifera P11B4 male)
CACGTGGTTGTGGGTACGCCAGGGCGTGTGTACGACATGATCCAGCGTGG
CGCTCTCGAGGTGGACAACCTCAAGATCTTTTGCCTCGACGAAGCCGACC
AAATGTTGGACCGCGGATTCAAGGACCAGATCTACGAAATCTTCCGCTGT
GGCTTGCCCAAGGACATGCAAGTCGTGTTGTTCAGTGCCACCATGCCCAC
TGAGGCCCTGGAGCTCACCACCAAGTTCATGCACTCTCCAGCCACCATCC
TCGTCAAGAAGGAGGAGCTCACCCTCGACGGAATCAAGCAGTTCTACATT
GACGTGGAACGCGAAGAATTCAAGCTCGACACCCTATGCGACCTCTACGA
AACCCTCGCCATCACCCAGGCCATCATCTACTGCAACACGCGCCGCAAGG
TCGACTGGCTCGTCGAAAAGATGCAAGAGCGTGACTTCACAGTCTCCGCC
ACCCACGGAGAGATGGAAATGAAGGACCGTGAACTCATCCTCAAGGAATT
CCGTTCCGGAGCCTCCCGTGTCTTGATCACCACCGACTTGCTCGCGCGAG
GCATCGACGTGCAACAGGTCTCCCTCGTCATCAACTACGACCTGCCCACC
AACCGAGAGAACTATATCCACCGCATCGGACGTGGTGGACGCTTTGGTCG
AAAAGGCCACGTGGTTGTGGGTACGCCAGGGCGTGTGTACGACATGATCC
AGCGTGGCGCTCTCGAGGTGGACAACCTCAAGATCTTTTGCCTCGACGAA
GCCGACCAAATGTTGGACCGCGGATTCAAGGACCAGATCTACGAAATCTT
CCGCTGTGGCTTGCCCAAGGACATGCAAGTCGTGTTGTTCAGTGCCACCA
TGCCCACTGAGGCCCTGGAGCTCACCACCAAGTTCATGCACTCTCCAGCC
ACCATCCTCGTCAAGAAGGAGGAGCTCACCCTCGACGGAATCAAGCAGTT
CTACATTGACGTGGAACGCGAAGAATTCAAGCTCGACACCCTATGCGACC
TCTACGAAACCCTCGCCATCACCCAGGCCATCATCTACTGCAACACGCGC
CGCAAGGTCGACTGGCTCGTCGAAAAGATGCAAGAGCGTGACTTCACAGT
CTCCGCCACCCACGGAGAGATGGAAATGAAGGACCGTGAACTCATCCTCA
AGGAATTCCGTTCCGGAGCCTCCCGTGTCTTGATCACCACCGACTTGCTC
GCGCGAGGCATCGACGTGCAACAGGTCTCCCTCGTCATCAACTACGACCT
GCCCACCAACCGAGAGAACTATATCCACCGCATCGGACGTGGTGGACGCT
TTGGTCGAAAAGGC
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