mRNA_M-pyrifera_M_contig101791.379.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101791.379.1
Unique NamemRNA_M-pyrifera_M_contig101791.379.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101791.379.1 vs. uniprot
Match: A0A517PQN4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQN4_9PLAN)

HSP 1 Score: 328 bits (840), Expect = 2.610e-112
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 1 
Query:    1 PQSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPELTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHVKNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKNEEKPWSFFGDSNPKVKQ 480
            PQSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPELTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAH+KNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKK EEKPWSFFGDSNPKVKQ
Sbjct:   95 PQSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPELTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHIKNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKTEEKPWSFFGDSNPKVKQ 254
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BLAST of mRNA_M-pyrifera_M_contig101791.379.1 vs. uniprot
Match: A0A6I6AJ22_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AJ22_9PLAN)

HSP 1 Score: 318 bits (814), Expect = 2.330e-109
Identity = 151/160 (94.38%), Postives = 156/160 (97.50%), Query Frame = 1 
Query:    1 PQSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPELTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHVKNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKNEEKPWSFFGDSNPKVKQ 480
            PQSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPN  SP+LTSRFEQDISGFTLLQSA+PLSNVLKQENTT LGAH++NPWMFTNGAFSSQGATPILKK+QWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKK EEKPWSFFGDSNPKVKQ
Sbjct:   28 PQSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNKASPDLTSRFEQDISGFTLLQSAIPLSNVLKQENTTQLGAHIQNPWMFTNGAFSSQGATPILKKIQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKTEEKPWSFFGDSNPKVKQ 187
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BLAST of mRNA_M-pyrifera_M_contig101791.379.1 vs. uniprot
Match: A0A2E2C5Z2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2C5Z2_9PLAN)

HSP 1 Score: 176 bits (446), Expect = 2.210e-52
Identity = 84/163 (51.53%), Postives = 113/163 (69.33%), Query Frame = 1 
Query:    4 QSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPELTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHVKNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKNEEKPWSF------FGDSNPKV 474
            +SG +W GPEQ+ YL +Q  ILGFR  G +I WC SLL+ DP A  P++T R +QD++GF+LL +A P +  L +E  T LG+H+KN  MFT+G FS+  A PI+ K QWD GLLKL LTD+TK+F A VWID ++R++KK  EKPW++      FGD+  K 
Sbjct:   96 KSGTSWVGPEQDAYLEMQGKILGFRFSGKKIRWCRSLLKHDPKATLPDITDRVDQDVTGFSLLCAAAPSNERLAEEKPTRLGSHIKNRSMFTDGHFSAHYAPPIVTKFQWDEGLLKLSLTDQTKRFEAAVWIDVKSREIKKVFEKPWTYEEFYKKFGDAKTKA 258
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BLAST of mRNA_M-pyrifera_M_contig101791.379.1 vs. uniprot
Match: A0A517VS87_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VS87_9PLAN)

HSP 1 Score: 127 bits (320), Expect = 2.630e-33
Identity = 67/145 (46.21%), Postives = 93/145 (64.14%), Query Frame = 1 
Query:    4 QSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPELTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHVKNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKNEEK 438
            +SG  W GPE+N YL ++  ILGF ++   I W ES+L  DP + SP+LT+RFE+D++G +    A P + V     T L G  +K+  +F +G  SS G  PI+   QWD  LLKL LTD TK++ ATVWID ++++VKK EEK
Sbjct:   91 ESGSIWVGPERNGYLEIENKILGFFVVEHVIIWTESILNHDPKSPSPDLTNRFEKDVTGGSFYLGAYPANKV----KTNLKGV-IKDSIVFADGFGSSGGPRPIVTGFQWDKNLLKLSLTDETKEYEATVWIDVKSKEVKKAEEK 230
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BLAST of mRNA_M-pyrifera_M_contig101791.379.1 vs. uniprot
Match: A0A2E7K7Z9_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K7Z9_9PLAN)

HSP 1 Score: 118 bits (295), Expect = 1.050e-29
Identity = 68/145 (46.90%), Postives = 87/145 (60.00%), Query Frame = 1 
Query:    4 QSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPELTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHVKNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKNEEK 438
            +SG  WAG EQ  YL     ILGF++I   I W ES L  DP + SP++T+RFE+DI+G      +  L      E  T L   +KNP M + G   S G+TPI+   QWD  LLKL L D+TK++ ATVWID ++RK KK EEK
Sbjct:   96 ESGSIWAGREQVGYLETDNKILGFQIIEYMIFWSESSLNHDPKSTSPDITNRFEKDITG-----GSFYLDMDAANEGQTNLKDVIKNPEMCSRG---SGGSTPIVTGFQWDKNLLKLRLIDQTKQYEATVWIDMKSRKAKKAEEK 232
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BLAST of mRNA_M-pyrifera_M_contig101791.379.1 vs. uniprot
Match: A0A517VAN2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VAN2_9PLAN)

HSP 1 Score: 103 bits (257), Expect = 3.990e-24
Identity = 59/148 (39.86%), Postives = 85/148 (57.43%), Query Frame = 1 
Query:    4 QSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPE---LTSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHVKNPWMFTNGAFSSQGATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKNEEK 438
            +SG  W G EQ  YL +   ILGF + G+ I W ES+L  DP +  P+   +T+ FE++++G +L  +   L+N+ + +  + +         F NG  SS G  PI+   QWD  LLKL LT+  K + ATVWID  +R+VKK EEK
Sbjct:   91 ESGSIWVGREQIGYLEIDNKILGFHVFGEMILWTESILDHDPKSTLPDVTNITNHFEKNVTGGSLQAANNGLTNLKEIDQDSRV---------FGNGYGSSGGPMPIVTGFQWDRNLLKLSLTEPEKLYEATVWIDVNSREVKKAEEK 229
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101791.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A517PQN4_9PLAN2.610e-11298.75Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A6I6AJ22_9PLAN2.330e-10994.38Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A2E2C5Z2_9PLAN2.210e-5251.53Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
A0A517VS87_9PLAN2.630e-3346.21Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A2E7K7Z9_9PLAN1.050e-2946.90Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517VAN2_9PLAN3.990e-2439.86Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101791contigM-pyrifera_M_contig101791:184..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.712956-CDS-M-pyrifera_M_contig101791:183..6661622815517.712956-CDS-M-pyrifera_M_contig101791:183..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101791 184..666 -
1692277446.4355397-CDS-M-pyrifera_M_contig101791:183..6661692277446.4355397-CDS-M-pyrifera_M_contig101791:183..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101791 184..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101791.379.1prot_M-pyrifera_M_contig101791.379.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101791 184..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101791.379.1

>prot_M-pyrifera_M_contig101791.379.1 ID=prot_M-pyrifera_M_contig101791.379.1|Name=mRNA_M-pyrifera_M_contig101791.379.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
PQSGLTWAGPEQNTYLVLQEGILGFRLIGDRIDWCESLLQRDPNAVSPEL
TSRFEQDISGFTLLQSALPLSNVLKQENTTLLGAHVKNPWMFTNGAFSSQ
GATPILKKLQWDAGLLKLDLTDRTKKFAATVWIDPQTRKVKKNEEKPWSF
FGDSNPKVKQ*
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mRNA from alignment at M-pyrifera_M_contig101791:184..666-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101791.379.1 ID=mRNA_M-pyrifera_M_contig101791.379.1|Name=mRNA_M-pyrifera_M_contig101791.379.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig101791:184..666- (Macrocystis pyrifera P11B4 male)
CCCCAATCAGGCCTGACTTGGGCGGGCCCCGAACAGAATACTTATCTGGT
GTTGCAAGAGGGGATTCTGGGCTTTCGCCTCATAGGAGATCGCATCGACT
GGTGCGAGAGTTTACTGCAGCGTGATCCTAATGCGGTTTCCCCTGAACTG
ACATCTCGTTTTGAACAGGATATCTCAGGCTTCACATTGCTGCAGTCAGC
GCTACCATTAAGCAATGTGTTGAAACAAGAAAATACAACCCTGCTGGGGG
CGCATGTCAAAAACCCGTGGATGTTTACGAATGGTGCATTCAGCTCTCAA
GGTGCCACCCCGATTCTCAAAAAGCTGCAATGGGACGCCGGCTTATTGAA
ACTCGATTTGACTGATCGGACGAAAAAGTTTGCAGCGACGGTCTGGATTG
ATCCCCAGACCAGAAAGGTAAAGAAAAACGAGGAGAAACCCTGGAGTTTT
TTTGGTGACAGCAACCCAAAAGTGAAGCAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101791:184..666-

>mRNA_M-pyrifera_M_contig101791.379.1 ID=mRNA_M-pyrifera_M_contig101791.379.1|Name=mRNA_M-pyrifera_M_contig101791.379.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig101791:184..666- (Macrocystis pyrifera P11B4 male)
CCCCAATCAGGCCTGACTTGGGCGGGCCCCGAACAGAATACTTATCTGGT
GTTGCAAGAGGGGATTCTGGGCTTTCGCCTCATAGGAGATCGCATCGACT
GGTGCGAGAGTTTACTGCAGCGTGATCCTAATGCGGTTTCCCCTGAACTG
ACATCTCGTTTTGAACAGGATATCTCAGGCTTCACATTGCTGCAGTCAGC
GCTACCATTAAGCAATGTGTTGAAACAAGAAAATACAACCCTGCTGGGGG
CGCATGTCAAAAACCCGTGGATGTTTACGAATGGTGCATTCAGCTCTCAA
GGTGCCACCCCGATTCTCAAAAAGCTGCAATGGGACGCCGGCTTATTGAA
ACTCGATTTGACTGATCGGACGAAAAAGTTTGCAGCGACGGTCTGGATTG
ATCCCCAGACCAGAAAGGTAAAGAAAAACGAGGAGAAACCCTGGAGTTTT
TTTGGTGACAGCAACCCAAAAGTGAAGCAGTAACCCCAATCAGGCCTGAC
TTGGGCGGGCCCCGAACAGAATACTTATCTGGTGTTGCAAGAGGGGATTC
TGGGCTTTCGCCTCATAGGAGATCGCATCGACTGGTGCGAGAGTTTACTG
CAGCGTGATCCTAATGCGGTTTCCCCTGAACTGACATCTCGTTTTGAACA
GGATATCTCAGGCTTCACATTGCTGCAGTCAGCGCTACCATTAAGCAATG
TGTTGAAACAAGAAAATACAACCCTGCTGGGGGCGCATGTCAAAAACCCG
TGGATGTTTACGAATGGTGCATTCAGCTCTCAAGGTGCCACCCCGATTCT
CAAAAAGCTGCAATGGGACGCCGGCTTATTGAAACTCGATTTGACTGATC
GGACGAAAAAGTTTGCAGCGACGGTCTGGATTGATCCCCAGACCAGAAAG
GTAAAGAAAAACGAGGAGAAACCCTGGAGTTTTTTTGGTGACAGCAACCC
AAAAGTGAAGCAGTAA
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