mRNA_M-pyrifera_M_contig101787.376.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101787.376.1
Unique NamemRNA_M-pyrifera_M_contig101787.376.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A5A8CG16_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CG16_CAFRO)

HSP 1 Score: 119 bits (299), Expect = 1.000e-28
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 QLARLADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQ 321
            QL+RL   + AAED  F LRLR +PSHLDLE+ F+RLPNL+ +EL YG    GM FDRA++GMK +DA+SLAKC KAT TLT+L L +  ++D++   LM GL+ N+
Sbjct:  394 QLSRLVLHMEAAEDVAFSLRLRQLPSHLDLEIPFSRLPNLSELELSYGIARVGMTFDRALLGMKVTDAMSLAKCAKATQTLTSLALQANLINDKVLAALMEGLAENR 500          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A7S3LUM3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LUM3_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 4.830e-28
Identity = 59/128 (46.09%), Postives = 89/128 (69.53%), Query Frame = 1
Query:   19 DELI-AAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQTVTSLDLSHNRLSTAPARLLSSLLGP 399
            +EL+  ++ FV++L L  +PSH++LE+LFARLP L +++L Y     GM +DR+  GM+ +DA SLAK VKAT +LT+L LP   +DD+  ++L  GL  N T+T+LDLSHN+++    R L+ +L P
Sbjct:  129 EELLDTSKAFVYQLVLDQLPSHMELEMLFARLPKLISLQLTYSLRNVGMDYDRSQFGMRITDAASLAKEVKATTSLTSLSLPRNLLDDDKVRILATGLKDNGTITALDLSHNKIADRGTRALAKILSP 256          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A7S3GGA2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGA2_9EUKA)

HSP 1 Score: 115 bits (289), Expect = 4.830e-28
Identity = 59/128 (46.09%), Postives = 89/128 (69.53%), Query Frame = 1
Query:   19 DELI-AAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQTVTSLDLSHNRLSTAPARLLSSLLGP 399
            +EL+  ++ FV++L L  +PSH++LE+LFARLP L +++L Y     GM +DR+  GM+ +DA SLAK VKAT +LT+L LP   +DD+  ++L  GL  N T+T+LDLSHN+++    R L+ +L P
Sbjct:  129 EELLDTSKAFVYQLVLDQLPSHMELEMLFARLPKLISLQLTYSLRNVGMDYDRSQFGMRITDAASLAKEVKATTSLTSLSLPRNLLDDDKVRILATGLKDNGTITALDLSHNKIADRGTRALAKILSP 256          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A7S1C834_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C834_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.640e-27
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 QLARLADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQTV 327
            QL  L   + A+ED+VF L L+   SHLDLE++F  LPNL+ +EL YG    GM ++R++ GMK SDA+SLAKCVKAT TLT+L LP   +DD L ++LM GL  NQT+
Sbjct:  308 QLEALTKRIKASEDYVFALTLQQFLSHLDLELVFKFLPNLSNLELTYGVRNIGMKYERSLFGMKISDAMSLAKCVKATDTLTSLILPCNMIDDALLRMLMTGLVHNQTI 416          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A812VJA6_9DINO (DRC5 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VJA6_9DINO)

HSP 1 Score: 112 bits (280), Expect = 3.420e-26
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 QLARLADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQTVT 330
            QL+RL   L A ED  F L L    SHL  E++F+RLPNL ++ L YG  G GM + RA++G+K +DA+SLAKC+KATPTL +L LP   +DD+L ++L+ G+  NQTVT
Sbjct:  377 QLSRLVKHLEAGEDCTFALTLGQQLSHLVWEIVFSRLPNLASLTLTYGVQGVGMRYSRALLGLKVTDAMSLAKCLKATPTLASLSLPRNLLDDDLLRLLITGMVHNQTVT 486          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A835Z8G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.070e-25
Identity = 58/123 (47.15%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   25 LIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQTVTSLDLSHNRLSTAPARLLSSLL 393
            L + +D+VF L++  +  HLD+E + A LPNL  ++L YG    GM ++R ++GMK SDA +LA+ + A P LTTL L    VDD+L ++L AGL+   T+T LDLSHNR++   ARLL+ LL
Sbjct:  153 LRSCQDYVFTLQVGQMLGHLDMERVCACLPNLACLDLTYGVRNIGMKYERMLLGMKISDAAALARALPAAPCLTTLALRGGLVDDDLLRMLAAGLARAATLTHLDLSHNRIADHGARLLARLL 275          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A7S2S000_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S000_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.550e-24
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   13 LADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVK---------ATPTLTTLCLPSAFVDDELCKVLMAGLSANQTVTSLDLSHNRLSTAPARLLSSLLGPDS 405
            L D L A +D++F L +R + SHLD+  + +RLPNLT ++L YG    GM + R M GMK SDA SLA C+              LT++ L    +DD+L ++LM GL  N ++T LD+SHN+++    RLL+ LLG  S
Sbjct:   54 LFDFLEACQDYIFTLTIRELRSHLDMSEVCSRLPNLTKLDLTYGVKKCGMEYVRMMFGMKISDANSLATCLALGGGPGTGVGGGILTSVVLTCNLIDDDLLRMLMTGLIKNDSITHLDVSHNKITNHGVRLLAKLLGGQS 193          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A813J9A3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J9A3_POLGL)

HSP 1 Score: 105 bits (261), Expect = 1.760e-24
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 QLARLADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQTVTSLDLSH 348
            +L  L  +++A+   VF+L +   PSHLDL  LF  LP L++  + YG    GM ++RAM GMK SDA  LA+ ++ + TL +LCLP   +DDEL KVLM GLS    +T LDLSH
Sbjct:  125 ELEALKQQVMASRLHVFQLNISQFPSHLDLSFLFDALPALSSFSITYGNRRLGMDYERAMFGMKISDAQYLARDIRVSQTLVSLCLPCNMIDDELVKVLMGGLSYGHMLTHLDLSH 240          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A7J6M5L0_PERCH (T-complex-associated testis-expressed protein 1 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6M5L0_PERCH)

HSP 1 Score: 107 bits (267), Expect = 1.940e-24
Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:    1 QLARLADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGA-GMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCK---------------VLMAGLSANQTVTSLDLSHNRLSTAPARLLSSLLGPD 402
            Q+ +L + L A  D VFRL    +PSHLDL +L ARLP L+++++ +G     GM +DRA+ GMK  DA++L++ VK T TL  L LP   +DDEL K               +L+AGL     +T LDLSHNR+    AR +SSLL P 
Sbjct:  196 QMEQLIEILRATSDSVFRLEFDELPSHLDLSLLIARLPCLSSLKVSFGRRRKLGMQYDRALFGMKLEDAINLSRGVKLTQTLHKLALPHNLIDDELIKASIRAPIDDVAFPFIILVAGLQNCHFLTELDLSHNRICDRGARKISSLLSPS 345          
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Match: A0A2R5GES2_9STRA (T-complex-associated testis-expressed protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GES2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.400e-23
Identity = 50/104 (48.08%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   13 LADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGALGAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLMAGLSANQT 324
            + + L A++DFVF+LR+  + SH D  +LF  LPNL+ +EL YG    GM ++R++ GM+ SDA SLA+ +KA+ TLTT+CLP   VDD++ ++LM GL +N T
Sbjct:  156 ILEHLRASQDFVFQLRIGQLLSHFDPMLLFEHLPNLSRLELTYGVRRVGMQYERSLFGMRMSDAGSLARAIKASSTLTTICLPCNLVDDDMVQMLMTGLISNCT 259          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101787.376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CG16_CAFRO1.000e-2856.07Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S3LUM3_9EUKA4.830e-2846.09Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3GGA2_9EUKA4.830e-2846.09Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S1C834_9STRA2.640e-2754.13Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A812VJA6_9DINO3.420e-2651.82DRC5 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A835Z8G8_9STRA1.070e-2547.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S000_9STRA1.550e-2442.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A813J9A3_POLGL1.760e-2447.41Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7J6M5L0_PERCH1.940e-2443.33T-complex-associated testis-expressed protein 1 n=... [more]
A0A2R5GES2_9STRA4.400e-2348.08T-complex-associated testis-expressed protein 1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101787contigM-pyrifera_M_contig101787:2..415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1e-16
Seed eggNOG ortholog2880.D8LCL7
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.5746796-CDS-M-pyrifera_M_contig101787:1..4151622815517.5746796-CDS-M-pyrifera_M_contig101787:1..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101787 2..415 -
1692277446.3701007-CDS-M-pyrifera_M_contig101787:1..4151692277446.3701007-CDS-M-pyrifera_M_contig101787:1..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101787 2..415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101787.376.1prot_M-pyrifera_M_contig101787.376.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101787 2..415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101787.376.1

>prot_M-pyrifera_M_contig101787.376.1 ID=prot_M-pyrifera_M_contig101787.376.1|Name=mRNA_M-pyrifera_M_contig101787.376.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
QLARLADELIAAEDFVFRLRLRSIPSHLDLEVLFARLPNLTTIELGYGAL
GAGMHFDRAMVGMKASDALSLAKCVKATPTLTTLCLPSAFVDDELCKVLM
AGLSANQTVTSLDLSHNRLSTAPARLLSSLLGPDSVLS
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mRNA from alignment at M-pyrifera_M_contig101787:2..415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101787.376.1 ID=mRNA_M-pyrifera_M_contig101787.376.1|Name=mRNA_M-pyrifera_M_contig101787.376.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig101787:2..415- (Macrocystis pyrifera P11B4 male)
CAACTTGCTCGGTTGGCTGACGAGTTGATTGCGGCTGAAGATTTCGTGTT TCGGCTTCGGCTTCGATCGATTCCGTCGCATTTGGATTTGGAGGTTTTGT TCGCGCGATTGCCAAACCTGACCACGATCGAATTGGGGTATGGAGCGTTG GGTGCTGGAATGCACTTTGACCGCGCAATGGTGGGCATGAAGGCGAGCGA TGCGCTTTCTCTCGCCAAGTGTGTCAAAGCCACTCCGACTCTGACCACCC TCTGTCTCCCTTCTGCGTTTGTGGATGACGAATTGTGCAAAGTCCTCATG GCAGGGTTGAGCGCCAATCAAACGGTCACCTCTCTCGACCTCTCCCACAA CCGGCTCTCTACAGCCCCTGCTCGTCTCCTGTCTTCTCTGCTTGGCCCCG ACTCTGTGCTATCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101787:2..415-

>mRNA_M-pyrifera_M_contig101787.376.1 ID=mRNA_M-pyrifera_M_contig101787.376.1|Name=mRNA_M-pyrifera_M_contig101787.376.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig101787:2..415- (Macrocystis pyrifera P11B4 male)
CAACTTGCTCGGTTGGCTGACGAGTTGATTGCGGCTGAAGATTTCGTGTT
TCGGCTTCGGCTTCGATCGATTCCGTCGCATTTGGATTTGGAGGTTTTGT
TCGCGCGATTGCCAAACCTGACCACGATCGAATTGGGGTATGGAGCGTTG
GGTGCTGGAATGCACTTTGACCGCGCAATGGTGGGCATGAAGGCGAGCGA
TGCGCTTTCTCTCGCCAAGTGTGTCAAAGCCACTCCGACTCTGACCACCC
TCTGTCTCCCTTCTGCGTTTGTGGATGACGAATTGTGCAAAGTCCTCATG
GCAGGGTTGAGCGCCAATCAAACGGTCACCTCTCTCGACCTCTCCCACAA
CCGGCTCTCTACAGCCCCTGCTCGTCTCCTGTCTTCTCTGCTTGGCCCCG
ACTCTGTGCTATCGCAACTTGCTCGGTTGGCTGACGAGTTGATTGCGGCT
GAAGATTTCGTGTTTCGGCTTCGGCTTCGATCGATTCCGTCGCATTTGGA
TTTGGAGGTTTTGTTCGCGCGATTGCCAAACCTGACCACGATCGAATTGG
GGTATGGAGCGTTGGGTGCTGGAATGCACTTTGACCGCGCAATGGTGGGC
ATGAAGGCGAGCGATGCGCTTTCTCTCGCCAAGTGTGTCAAAGCCACTCC
GACTCTGACCACCCTCTGTCTCCCTTCTGCGTTTGTGGATGACGAATTGT
GCAAAGTCCTCATGGCAGGGTTGAGCGCCAATCAAACGGTCACCTCTCTC
GACCTCTCCCACAACCGGCTCTCTACAGCCCCTGCTCGTCTCCTGTCTTC
TCTGCTTGGCCCCGACTCTGTGCTATCG
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