mRNA_M-pyrifera_M_contig101767.369.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101767.369.1
Unique NamemRNA_M-pyrifera_M_contig101767.369.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A087YEJ8_POEFO (Proline-serine-threonine phosphatase-interacting protein 1-like n=10 Tax=Poeciliinae TaxID=586240 RepID=A0A087YEJ8_POEFO)

HSP 1 Score: 60.1 bits (144), Expect = 6.790e-9
Identity = 28/62 (45.16%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   25 LPPAPGQRERAIVACTFTGEDQGELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            LP AP   +  +V   +T ++Q ELSV  G ++ VL K+ DGWWTV   G   +GLVPG++L
Sbjct:  349 LPSAPEDEQFYVVLYEYTAQEQDELSVSRGDIVQVLVKEEDGWWTVERNGY--SGLVPGNYL 408          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A2D4BLP7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLP7_PYTIN)

HSP 1 Score: 58.9 bits (141), Expect = 1.810e-8
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   25 LPPAPGQRERAIVACTFTGEDQG-ELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            LPP P +RE+A     F  +D+  +L +  G  +++L+KD+DGWW VR+ G K  GLVPGS+L
Sbjct:   72 LPPPP-RREKATALYDFAPQDESTQLRLRKGDTMEILRKDADGWWFVRLNGEK--GLVPGSYL 131          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A672JTH8_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672JTH8_SALFA)

HSP 1 Score: 58.2 bits (139), Expect = 3.260e-8
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 PNMRRRGSLPPAPGQRERAIVACTFTGEDQGELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            P  ++  ++  AP   E  IV   +  +++ E+SV  GA++ VL++  DGWWTV   G   TGLVPG+FL
Sbjct:  348 PCFQQEAAVATAPTDGEYCIVVYQYDAQEEDEMSVSRGAVVRVLERGEDGWWTVERNGL--TGLVPGNFL 415          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A2P4YQ30_9STRA (Microfilament motor n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQ30_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.180e-8
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   31 PAPGQRERAIVACTFTGEDQG-ELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            P P ++E+A+    F  +D   +L++  G  +DV++KDSDGWW V  +G K  GLVPGS+L
Sbjct:   68 PEPARKEQAVARFNFVPQDPSTQLALSKGDEVDVVRKDSDGWWFVIKDGEK--GLVPGSYL 126          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A8K1C5R4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5R4_PYTOL)

HSP 1 Score: 55.8 bits (133), Expect = 2.190e-7
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   25 LPPAPGQRERAIVACTFTGEDQG-ELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            +PPAP  RE+A     F  +D   +L +  G  L++++KDSDGWW V  +G K  GLVPGS+L
Sbjct:   60 VPPAP-TREKATALYDFMPQDTSTQLGLRKGETLEIIRKDSDGWWFVVKDGEK--GLVPGSYL 119          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: UPI000D726BFA (SH3 and PX domain-containing protein 2A-like isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D726BFA)

HSP 1 Score: 55.8 bits (133), Expect = 2.200e-7
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   40 GQRERAIVACTFTGEDQGELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            G+ ER I   T++ +++ ELS+  G L++V++K+ DGWW VR +G  + G+ P ++L
Sbjct:  234 GEEERYICIETYSAQNEDELSLSKGVLVEVVQKNMDGWWEVRYQG--QVGIAPATYL 288          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A2T7PC82_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PC82_POMCA)

HSP 1 Score: 55.8 bits (133), Expect = 2.230e-7
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   40 GQRERAIVACTFTGEDQGELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            G+ ER I   T++ +++ ELS+  G L++V++K+ DGWW VR +G  + G+ P ++L
Sbjct: 1542 GEEERYICIETYSAQNEDELSLSKGVLVEVVQKNMDGWWEVRYQG--QVGIAPATYL 1596          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A8D0CHF0_SCLFO (Nephrocystin 1 n=5 Tax=Scleropages formosus TaxID=113540 RepID=A0A8D0CHF0_SCLFO)

HSP 1 Score: 55.5 bits (132), Expect = 2.970e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   58 IVACTFTGEDQGELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            +VAC+F GE +G+L+V  G LL +L K+ DGWW  + +     G+VP +FL
Sbjct:  158 VVACSFKGEQEGDLTVQKGDLLRILSKNPDGWWLAQ-DSKGRMGVVPKNFL 207          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A8C9VET8_SCLFO (Nephrocystin 1 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9VET8_SCLFO)

HSP 1 Score: 55.5 bits (132), Expect = 2.970e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   58 IVACTFTGEDQGELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            +VAC+F GE +G+L+V  G LL +L K+ DGWW  + +     G+VP +FL
Sbjct:  150 VVACSFKGEQEGDLTVQKGDLLRILSKNPDGWWLAQ-DSKGRMGVVPKNFL 199          
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Match: A0A0P7UVU1_SCLFO (Nephrocystin-1-like n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7UVU1_SCLFO)

HSP 1 Score: 55.5 bits (132), Expect = 2.980e-7
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   58 IVACTFTGEDQGELSVPAGALLDVLKKDSDGWWTVRVEGTKETGLVPGSFL 210
            +VAC+F GE +G+L+V  G LL +L K+ DGWW  + +     G+VP +FL
Sbjct:  230 VVACSFKGEQEGDLTVQKGDLLRILSKNPDGWWLAQ-DSKGRMGVVPKNFL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101767.369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A087YEJ8_POEFO6.790e-945.16Proline-serine-threonine phosphatase-interacting p... [more]
A0A2D4BLP7_PYTIN1.810e-846.03Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A672JTH8_SALFA3.260e-840.00Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A2P4YQ30_9STRA8.180e-844.26Microfilament motor n=1 Tax=Phytophthora palmivora... [more]
A0A8K1C5R4_PYTOL2.190e-746.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000D726BFA2.200e-738.60SH3 and PX domain-containing protein 2A-like isofo... [more]
A0A2T7PC82_POMCA2.230e-738.60Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
A0A8D0CHF0_SCLFO2.970e-745.10Nephrocystin 1 n=5 Tax=Scleropages formosus TaxID=... [more]
A0A8C9VET8_SCLFO2.970e-745.10Nephrocystin 1 n=2 Tax=Scleropages formosus TaxID=... [more]
A0A0P7UVU1_SCLFO2.980e-745.10Nephrocystin-1-like n=2 Tax=Scleropages formosus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101767contigM-pyrifera_M_contig101767:194..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size204
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.2453666-UTR-M-pyrifera_M_contig101767:193..1991622815517.2453666-UTR-M-pyrifera_M_contig101767:193..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101767 194..199 +
1692277446.2642884-UTR-M-pyrifera_M_contig101767:193..1991692277446.2642884-UTR-M-pyrifera_M_contig101767:193..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101767 194..199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.255917-CDS-M-pyrifera_M_contig101767:199..4031622815517.255917-CDS-M-pyrifera_M_contig101767:199..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101767 200..403 +
1692277446.273165-CDS-M-pyrifera_M_contig101767:199..4031692277446.273165-CDS-M-pyrifera_M_contig101767:199..403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101767 200..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101767.369.1prot_M-pyrifera_M_contig101767.369.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101767 200..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101767.369.1

>prot_M-pyrifera_M_contig101767.369.1 ID=prot_M-pyrifera_M_contig101767.369.1|Name=mRNA_M-pyrifera_M_contig101767.369.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
MRRRGSLPPAPGQRERAIVACTFTGEDQGELSVPAGALLDVLKKDSDGWW
TVRVEGTKETGLVPGSFL
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mRNA from alignment at M-pyrifera_M_contig101767:194..403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101767.369.1 ID=mRNA_M-pyrifera_M_contig101767.369.1|Name=mRNA_M-pyrifera_M_contig101767.369.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig101767:194..403+ (Macrocystis pyrifera P11B4 male)
CCCAACATGCGCAGGCGAGGGTCCCTGCCCCCTGCCCCAGGCCAGAGGGA GAGGGCGATTGTGGCGTGCACATTCACAGGTGAAGACCAAGGAGAGCTTT CGGTGCCGGCCGGTGCCTTGCTGGACGTACTCAAGAAGGACTCAGACGGT TGGTGGACGGTGCGCGTCGAGGGCACGAAAGAGACTGGCCTCGTGCCGGG CTCCTTCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101767:194..403+

>mRNA_M-pyrifera_M_contig101767.369.1 ID=mRNA_M-pyrifera_M_contig101767.369.1|Name=mRNA_M-pyrifera_M_contig101767.369.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig101767:194..403+ (Macrocystis pyrifera P11B4 male)
ATGCGCAGGCGAGGGTCCCTGCCCCCTGCCCCAGGCCAGAGGGAGAGGGC
GATTGTGGCGTGCACATTCACAGGTGAAGACCAAGGAGAGCTTTCGGTGC
CGGCCGGTGCCTTGCTGGACGTACTCAAGAAGGACTCAGACGGTTGGTGG
ACGGTGCGCGTCGAGGGCACGAAAGAGACTGGCCTCGTGCCGGGCTCCTT
CCTCATGCGCAGGCGAGGGTCCCTGCCCCCTGCCCCAGGCCAGAGGGAGA
GGGCGATTGTGGCGTGCACATTCACAGGTGAAGACCAAGGAGAGCTTTCG
GTGCCGGCCGGTGCCTTGCTGGACGTACTCAAGAAGGACTCAGACGGTTG
GTGGACGGTGCGCGTCGAGGGCACGAAAGAGACTGGCCTCGTGCCGGGCT
CCTTCCTC
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