mRNA_M-pyrifera_M_contig101759.363.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101759.363.1
Unique NamemRNA_M-pyrifera_M_contig101759.363.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: C5LBQ8_PERM5 (GST N-terminal domain-containing protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LBQ8_PERM5)

HSP 1 Score: 81.3 bits (199), Expect = 4.680e-17
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 PQVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            P+V +YQYE+CPYC   KAFLD + V Y+T++VNPLTKG+I+     KDY KVP+A ID  QVND
Sbjct:   19 PEVNIYQYEICPYCNKVKAFLDWQQVPYKTMDVNPLTKGEIRFS---KDYRKVPIAFIDGVQVND 80
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BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: A0A7J6NMS2_PEROL (GST N-terminal domain-containing protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NMS2_PEROL)

HSP 1 Score: 80.9 bits (198), Expect = 7.620e-17
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 PQVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            P+V +YQYE+CPYC   KAFLD + V Y+T++VNPLTKG+I+     KDY KVP+A ID  QVND
Sbjct:   21 PEVNIYQYEICPYCNKVKAFLDWQQVPYKTMDVNPLTKGEIRFS---KDYRKVPIAFIDGIQVND 82
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BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: E1ZQI4_CHLVA (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQI4_CHLVA)

HSP 1 Score: 80.5 bits (197), Expect = 8.670e-17
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    7 VLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            V++YQYEVCP+CC  KAFLD+  + YR +EVNPLTK +IK      DY KVPV V+D +Q+ND
Sbjct:    1 VVLYQYEVCPFCCKVKAFLDYYKIPYRCVEVNPLTKAEIKWS----DYKKVPVVVVDGEQLND 59
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BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: A0A0G4EG01_VITBC (Glutaredoxin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EG01_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 1.970e-16
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 PQVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERV-----KDYLKVPVAVIDEKQVND 195
            P V ++QYEVCPYCC  KA LDH  + Y  IEVNPLTK +IK    +     K Y KVP+A+++ +QVND
Sbjct:    2 PDVTIFQYEVCPYCCGLKALLDHNKMPYTAIEVNPLTKDEIKKHPLIDQSPDKKYRKVPIALVNSEQVND 71
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BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: A0A7J6LEN3_PEROL (GST N-terminal domain-containing protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LEN3_PEROL)

HSP 1 Score: 80.9 bits (198), Expect = 2.690e-16
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 PQVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            P+V +YQYE+CPYC   KAFLD + V Y+T++VNPLTKG+I+     KDY KVP+A ID  QVND
Sbjct:   21 PEVNIYQYEICPYCNKVKAFLDWQQVPYKTMDVNPLTKGEIRFS---KDYRKVPIAFIDGIQVND 82
[Close]
BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: A0A2P6VBD6_9CHLO (Prostaglandin E synthase 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VBD6_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 2.730e-16
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    4 QVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            ++++YQY+VCP+CC  KAFLD+  + YR +EVNPLTK ++K      DY KVPV VID +QVND
Sbjct:   79 EIIVYQYDVCPFCCKVKAFLDYHKIPYRCVEVNPLTKAELKWS----DYKKVPVIVIDGEQVND 138
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BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: A0A7S2VLC9_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VLC9_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 4.700e-16
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    7 VLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            V +YQYE+CP+CC  KAFLD + +AY+ +EVNPL+K +I      KDY KVP+A++D +QVND
Sbjct:   79 VKLYQYEICPFCCKVKAFLDWQKIAYQAVEVNPLSKAEISFS---KDYRKVPIAMLDGEQVND 138
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BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: A0A7J6LRA6_PERCH (GST N-terminal domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6LRA6_PERCH)

HSP 1 Score: 79.7 bits (195), Expect = 6.510e-16
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 PQVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            P+V +YQYE+CPYC   KAFLD + V Y+T++VNPLTKG I+     KDY KVP+A ID  QVND
Sbjct:   25 PEVNIYQYEICPYCNKVKAFLDWQQVPYKTMDVNPLTKGGIRFS---KDYRKVPIAFIDGVQVND 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: C1EGI2_MICCC (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EGI2_MICCC)

HSP 1 Score: 77.8 bits (190), Expect = 6.930e-16
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    4 QVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            +V +YQY+VCP+C   KA+LD+RG+ Y  +EVNPLTK +IK     K+Y KVP+ ++D++Q+ND
Sbjct:    1 KVTLYQYDVCPFCNKVKAYLDYRGIPYDVVEVNPLTKSEIKFS---KEYRKVPIVMVDDEQLND 61
[Close]
BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Match: I0Z271_COCSC (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z271_COCSC)

HSP 1 Score: 76.6 bits (187), Expect = 1.820e-15
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    4 QVLMYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVPVAVIDEKQVND 195
            ++++YQYEVCP+CC  KAFLD+  + YRT+EV+PLTK Q+K  E    Y KVPVA++D + V D
Sbjct:    3 EIILYQYEVCPFCCKVKAFLDYHKLPYRTVEVSPLTKKQLKWSE----YRKVPVALLDGEIVTD 62
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101759.363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C5LBQ8_PERM54.680e-1760.00GST N-terminal domain-containing protein n=1 Tax=P... [more]
A0A7J6NMS2_PEROL7.620e-1760.00GST N-terminal domain-containing protein n=3 Tax=P... [more]
E1ZQI4_CHLVA8.670e-1758.73Prostaglandin E synthase 2 (Fragment) n=1 Tax=Chlo... [more]
A0A0G4EG01_VITBC1.970e-1652.86Glutaredoxin domain-containing protein n=2 Tax=Vit... [more]
A0A7J6LEN3_PEROL2.690e-1660.00GST N-terminal domain-containing protein n=2 Tax=P... [more]
A0A2P6VBD6_9CHLO2.730e-1656.25Prostaglandin E synthase 2 n=1 Tax=Micractinium co... [more]
A0A7S2VLC9_9DINO4.700e-1655.56Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7J6LRA6_PERCH6.510e-1660.00GST N-terminal domain-containing protein n=1 Tax=P... [more]
C1EGI2_MICCC6.930e-1651.56Prostaglandin E synthase 2 (Fragment) n=1 Tax=Micr... [more]
I0Z271_COCSC1.820e-1554.69Prostaglandin E synthase 2 (Fragment) n=1 Tax=Cocc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101759contigM-pyrifera_M_contig101759:472..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.0
Seed ortholog evalue8.8e-13
Seed eggNOG ortholog554065.XP_005844042.1
KEGG rclassRC00672
KEGG koko:K05309
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0016829,GO:0020037,GO:0033218,GO:0042277,GO:0043167,GO:0043168,GO:0043295,GO:0046906,GO:0048037,GO:0072341,GO:0097159,GO:1900750,GO:1901363,GO:1901681
EggNOG free text desc.Glutaredoxin
EggNOG OGs34HW2@3041,37KV2@33090,KOG3029@1,KOG3029@2759
EC5.3.99.3
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size195
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815516.9885933-UTR-M-pyrifera_M_contig101759:471..4831622815516.9885933-UTR-M-pyrifera_M_contig101759:471..483Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101759 472..483 +
1692277446.1670673-UTR-M-pyrifera_M_contig101759:471..4831692277446.1670673-UTR-M-pyrifera_M_contig101759:471..483Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101759 472..483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.000515-CDS-M-pyrifera_M_contig101759:483..6661622815517.000515-CDS-M-pyrifera_M_contig101759:483..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101759 484..666 +
1692277446.178842-CDS-M-pyrifera_M_contig101759:483..6661692277446.178842-CDS-M-pyrifera_M_contig101759:483..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101759 484..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101759.363.1prot_M-pyrifera_M_contig101759.363.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101759 484..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101759.363.1

>prot_M-pyrifera_M_contig101759.363.1 ID=prot_M-pyrifera_M_contig101759.363.1|Name=mRNA_M-pyrifera_M_contig101759.363.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
MYQYEVCPYCCAAKAFLDHRGVAYRTIEVNPLTKGQIKADERVKDYLKVP
VAVIDEKQVND
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mRNA from alignment at M-pyrifera_M_contig101759:472..666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101759.363.1 ID=mRNA_M-pyrifera_M_contig101759.363.1|Name=mRNA_M-pyrifera_M_contig101759.363.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig101759:472..666+ (Macrocystis pyrifera P11B4 male)
CCGCAAGTTCTCATGTACCAGTACGAGGTGTGCCCGTATTGTTGCGCGGC
CAAGGCGTTTTTGGACCACCGTGGCGTGGCGTATCGGACGATCGAGGTGA
ACCCATTGACGAAGGGACAGATCAAGGCGGATGAGAGAGTGAAAGACTAT
CTGAAGGTGCCCGTGGCCGTGATCGACGAGAAGCAAGTGAACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101759:472..666+

>mRNA_M-pyrifera_M_contig101759.363.1 ID=mRNA_M-pyrifera_M_contig101759.363.1|Name=mRNA_M-pyrifera_M_contig101759.363.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig101759:472..666+ (Macrocystis pyrifera P11B4 male)
ATGTACCAGTACGAGGTGTGCCCGTATTGTTGCGCGGCCAAGGCGTTTTT
GGACCACCGTGGCGTGGCGTATCGGACGATCGAGGTGAACCCATTGACGA
AGGGACAGATCAAGGCGGATGAGAGAGTGAAAGACTATCTGAAGGTGCCC
GTGGCCGTGATCGACGAGAAGCAAGTGAACGACATGTACCAGTACGAGGT
GTGCCCGTATTGTTGCGCGGCCAAGGCGTTTTTGGACCACCGTGGCGTGG
CGTATCGGACGATCGAGGTGAACCCATTGACGAAGGGACAGATCAAGGCG
GATGAGAGAGTGAAAGACTATCTGAAGGTGCCCGTGGCCGTGATCGACGA
GAAGCAAGTGAACGAC
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