mRNA_M-pyrifera_M_contig101702.356.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101702.356.1
Unique NamemRNA_M-pyrifera_M_contig101702.356.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: A0A7V8V7T5_9BACT (Haloacetate dehalogenase H-2 n=2 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V7T5_9BACT)

HSP 1 Score: 264 bits (674), Expect = 8.070e-88
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMNS 393
            HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMNS
Sbjct:  106 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMNS 236          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: UPI001CCE5056 (haloacid dehalogenase type II n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCE5056)

HSP 1 Score: 194 bits (492), Expect = 1.270e-59
Identity = 93/129 (72.09%), Postives = 107/129 (82.95%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAM 387
            HPDVAPAL+ALKEAGFR+ TLTNSSNS V  QM+NAGLT FFE+RLS+ED+QMFKPH H YKWA  KM V P + MLVAAHGWD+AGAL AG R AFI RPGAQL+P ++ PEI +PDL+QISK LI +
Sbjct:  147 HPDVAPALKALKEAGFRMVTLTNSSNSGVTAQMENAGLTHFFEKRLSIEDIQMFKPHTHAYKWAARKMEVDPSQCMLVAAHGWDVAGALWAGWRAAFISRPGAQLFPLAETPEINKPDLLQISKDLIQL 275          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: A0A517XJ92_9PLAN ((S)-2-haloacid dehalogenase n=8 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XJ92_9PLAN)

HSP 1 Score: 189 bits (480), Expect = 8.030e-58
Identity = 90/130 (69.23%), Postives = 107/130 (82.31%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMN 390
            HPDV PAL+ LK+AGFR+ TLTNSS + V  QMKNAGLTD FE+RLSVEDVQMFKPH H YKWA+ KMNV PE+ MLVAAHGWDIAGAL AG RGAF+ RPGAQLYP ++ PEI +PD+ Q++ +L+ + 
Sbjct:  142 HPDVRPALEQLKQAGFRMVTLTNSSQAGVDAQMKNAGLTDLFEDRLSVEDVQMFKPHSHVYKWASRKMNVPPEDCMLVAAHGWDIAGALWAGWRGAFVARPGAQLYPLAKQPEINQPDMQQVAAELLQLG 271          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: A0A517VPQ8_9PLAN ((S)-2-haloacid dehalogenase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPQ8_9PLAN)

HSP 1 Score: 184 bits (467), Expect = 7.420e-56
Identity = 87/131 (66.41%), Postives = 105/131 (80.15%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMNS 393
            HPDV PAL+ LK+AG+R+ TLTNSS + V  QMKNAGL D FE RLS+E++QMFKPH H YKWA  KM V PE+ ML+AAHGWDIAGAL AG RGAF+ RPGAQLYP ++ PEIIEPDL +++ QLI + +
Sbjct:  142 HPDVKPALEQLKQAGYRIVTLTNSSQAGVDAQMKNAGLFDLFETRLSIEELQMFKPHTHVYKWAARKMKVQPEDCMLIAAHGWDIAGALWAGWRGAFVSRPGAQLYPLARSPEIIEPDLQKVAAQLIQLGT 272          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: A0A517RN28_9PLAN ((S)-2-haloacid dehalogenase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RN28_9PLAN)

HSP 1 Score: 182 bits (463), Expect = 2.980e-55
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMNS 393
            HPDV PAL+ LK+AGFR+ TLTNSS + V  QMKNAGL D FE RLS+E++QMFKPH H YKWA  KM V PE+ ML+AAHGWDIAGAL AG RGAF+ RPGAQLYP ++ PEIIEP+L  ++ QL+ + +
Sbjct:  142 HPDVKPALEQLKQAGFRIVTLTNSSQAGVDTQMKNAGLYDLFETRLSIEELQMFKPHSHVYKWAARKMKVKPEDCMLIAAHGWDIAGALWAGWRGAFVSRPGAQLYPLAKQPEIIEPNLQHVAAQLLQLGT 272          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: A0A3D4UK69_9BACT (Haloacid dehalogenase type II n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UK69_9BACT)

HSP 1 Score: 172 bits (436), Expect = 2.850e-51
Identity = 86/131 (65.65%), Postives = 98/131 (74.81%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMNS 393
            HPDV   L  LK AG+R+ TLTNSSN  V  QM++AGLTD FE RLSVEDVQM+KPH H Y WA+ K+ V P E MLVAAHGWDIAGAL AG RGAF+ RPGAQLYP +  PEI  P+L Q + QLIA+ S
Sbjct:  138 HPDVRDGLARLKAAGYRMVTLTNSSNKGVEAQMEHAGLTDMFEARLSVEDVQMYKPHQHVYAWASRKLGVEPSECMLVAAHGWDIAGALWAGWRGAFLSRPGAQLYPLAPEPEISVPNLAQAADQLIALPS 268          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: A0A517Z6I8_9PLAN ((S)-2-haloacid dehalogenase n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z6I8_9PLAN)

HSP 1 Score: 171 bits (433), Expect = 8.090e-51
Identity = 80/130 (61.54%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMN 390
            H DV  AL+ LK AGFR+ TLTNSS + V  Q++NAGLTD FEERLSVE VQMFKPH H Y+WA N+M + PE+ MLVAAHGWD+AGA+ AGMR AF+ RPG Q++P +  PE++E DL  ++++LIAM 
Sbjct:  139 HEDVRSALEKLKGAGFRMVTLTNSSQAGVDAQIENAGLTDMFEERLSVESVQMFKPHSHVYRWAANRMEIPPEDCMLVAAHGWDVAGAMWAGMRAAFVARPGQQMFPLAPTPEVVESDLQGVAERLIAMT 268          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: UPI000A6321BA (haloacid dehalogenase type II n=1 Tax=Formosa haliotis TaxID=1555194 RepID=UPI000A6321BA)

HSP 1 Score: 170 bits (431), Expect = 1.530e-50
Identity = 84/130 (64.62%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMN 390
            HP+V  ALQ+LK+AG++L + TNSSN  V  Q KNAGL D+FEERLSVEDV  FKPH  TY WA  KM V P+E +LVAAHGWDIAGAL A  RGAF+ RPGAQLYP S  PEI EP+L +I+++LIA+ 
Sbjct:  137 HPEVKEALQSLKDAGYKLVSFTNSSNKGVETQFKNAGLLDYFEERLSVEDVGKFKPHADTYAWAARKMGVQPKECLLVAAHGWDIAGALWANWRGAFVSRPGAQLYPLSPSPEINEPNLKRIAERLIALK 266          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: H2BSW7_GILLR (Haloacid dehalogenase, type II n=1 Tax=Gillisia limnaea (strain DSM 15749 / LMG 21470 / R-8282) TaxID=865937 RepID=H2BSW7_GILLR)

HSP 1 Score: 165 bits (417), Expect = 1.940e-48
Identity = 82/130 (63.08%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMN 390
            HP+V  AL  LKE G+RL +LTNSSN+AV  Q  NAGL DFFEERLS+EDV  +KPH  TY WA+ KM V PEE+ML+AAHGWD+AGAL AG R AF+ RPG Q YP +  PEI  PDL  IS++LIA+ 
Sbjct:  135 HPEVKEALGKLKEDGYRLISLTNSSNAAVEKQFTNAGLLDFFEERLSIEDVGKYKPHVDTYNWASRKMGVKPEEAMLIAAHGWDVAGALWAGWRAAFVSRPGQQQYPLAPEPEIAAPDLKIISEKLIALE 264          
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Match: A0A512CCG4_9BACT (Haloacid dehalogenase n=2 Tax=Cyclobacterium qasimii TaxID=1350429 RepID=A0A512CCG4_9BACT)

HSP 1 Score: 165 bits (417), Expect = 2.050e-48
Identity = 79/130 (60.77%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVEDVQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDRPGAQLYPPSQVPEIIEPDLIQISKQLIAMN 390
            HP+V  +LQ LK+AG++L + TNSSN  V  Q +NAGL D+FEERLS+ED+  FKPH   Y WA  KM + P E +LVAAHGWDIAGAL AG RGAFI RPGAQLYP +  PEIIE DL  ++K+LI++ 
Sbjct:  138 HPEVKASLQQLKDAGYKLVSFTNSSNKGVKTQFENAGLLDYFEERLSIEDMGKFKPHADAYDWAARKMEIKPSECLLVAAHGWDIAGALWAGWRGAFISRPGAQLYPLAPKPEIIENDLALVTKKLISLK 267          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101702.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8V7T5_9BACT8.070e-88100.00Haloacetate dehalogenase H-2 n=2 Tax=Bremerella al... [more]
UPI001CCE50561.270e-5972.09haloacid dehalogenase type II n=1 Tax=Bremerella v... [more]
A0A517XJ92_9PLAN8.030e-5869.23(S)-2-haloacid dehalogenase n=8 Tax=Planctomycetac... [more]
A0A517VPQ8_9PLAN7.420e-5666.41(S)-2-haloacid dehalogenase n=2 Tax=Gimesia aquari... [more]
A0A517RN28_9PLAN2.980e-5565.65(S)-2-haloacid dehalogenase n=2 Tax=Gimesia TaxID=... [more]
A0A3D4UK69_9BACT2.850e-5165.65Haloacid dehalogenase type II n=2 Tax=Phycisphaera... [more]
A0A517Z6I8_9PLAN8.090e-5161.54(S)-2-haloacid dehalogenase n=1 Tax=Maioricimonas ... [more]
UPI000A6321BA1.530e-5064.62haloacid dehalogenase type II n=1 Tax=Formosa hali... [more]
H2BSW7_GILLR1.940e-4863.08Haloacid dehalogenase, type II n=1 Tax=Gillisia li... [more]
A0A512CCG4_9BACT2.050e-4860.77Haloacid dehalogenase n=2 Tax=Cyclobacterium qasim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101702contigM-pyrifera_M_contig101702:2..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score191.8
Seed ortholog evalue2e-46
Seed eggNOG ortholog344747.PM8797T_12618
KEGG rclassRC00697
KEGG koko:K01560
KEGG ReactionR05287
KEGG Pathwayko00361,ko00625,ko01100,ko01120,map00361,map00625,map01100,map01120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cryptic haloacid dehalogenase 1
EggNOG OGs2IZ1C@203682,COG1011@1,COG1011@2
EC3.8.1.2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.6691115-CDS-M-pyrifera_M_contig101702:1..3971622815515.6691115-CDS-M-pyrifera_M_contig101702:1..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101702 2..397 +
1692277446.0605605-CDS-M-pyrifera_M_contig101702:1..3971692277446.0605605-CDS-M-pyrifera_M_contig101702:1..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101702 2..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101702.356.1prot_M-pyrifera_M_contig101702.356.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101702 2..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101702.356.1

>prot_M-pyrifera_M_contig101702.356.1 ID=prot_M-pyrifera_M_contig101702.356.1|Name=mRNA_M-pyrifera_M_contig101702.356.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
HPDVAPALQALKEAGFRLATLTNSSNSAVADQMKNAGLTDFFEERLSVED
VQMFKPHPHTYKWATNKMNVAPEESMLVAAHGWDIAGALNAGMRGAFIDR
PGAQLYPPSQVPEIIEPDLIQISKQLIAMNS*
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mRNA from alignment at M-pyrifera_M_contig101702:2..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101702.356.1 ID=mRNA_M-pyrifera_M_contig101702.356.1|Name=mRNA_M-pyrifera_M_contig101702.356.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig101702:2..397+ (Macrocystis pyrifera P11B4 male)
CATCCCGATGTGGCACCGGCATTGCAAGCGCTCAAGGAAGCGGGCTTTCG TCTGGCAACGCTGACCAATTCGTCAAATTCCGCAGTTGCCGATCAAATGA AAAATGCCGGGCTCACGGACTTCTTCGAAGAACGACTCAGCGTCGAAGAC GTCCAGATGTTTAAACCTCACCCCCATACCTATAAATGGGCCACCAACAA GATGAACGTGGCGCCAGAGGAAAGCATGCTCGTCGCCGCTCACGGATGGG ATATCGCCGGTGCGTTGAATGCCGGCATGCGTGGGGCCTTCATTGATCGA CCAGGCGCCCAACTCTACCCACCCTCTCAAGTTCCCGAAATCATCGAACC GGATCTGATTCAGATTTCTAAGCAACTCATCGCGATGAATTCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101702:2..397+

>mRNA_M-pyrifera_M_contig101702.356.1 ID=mRNA_M-pyrifera_M_contig101702.356.1|Name=mRNA_M-pyrifera_M_contig101702.356.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig101702:2..397+ (Macrocystis pyrifera P11B4 male)
CATCCCGATGTGGCACCGGCATTGCAAGCGCTCAAGGAAGCGGGCTTTCG
TCTGGCAACGCTGACCAATTCGTCAAATTCCGCAGTTGCCGATCAAATGA
AAAATGCCGGGCTCACGGACTTCTTCGAAGAACGACTCAGCGTCGAAGAC
GTCCAGATGTTTAAACCTCACCCCCATACCTATAAATGGGCCACCAACAA
GATGAACGTGGCGCCAGAGGAAAGCATGCTCGTCGCCGCTCACGGATGGG
ATATCGCCGGTGCGTTGAATGCCGGCATGCGTGGGGCCTTCATTGATCGA
CCAGGCGCCCAACTCTACCCACCCTCTCAAGTTCCCGAAATCATCGAACC
GGATCTGATTCAGATTTCTAAGCAACTCATCGCGATGAATTCTTAACATC
CCGATGTGGCACCGGCATTGCAAGCGCTCAAGGAAGCGGGCTTTCGTCTG
GCAACGCTGACCAATTCGTCAAATTCCGCAGTTGCCGATCAAATGAAAAA
TGCCGGGCTCACGGACTTCTTCGAAGAACGACTCAGCGTCGAAGACGTCC
AGATGTTTAAACCTCACCCCCATACCTATAAATGGGCCACCAACAAGATG
AACGTGGCGCCAGAGGAAAGCATGCTCGTCGCCGCTCACGGATGGGATAT
CGCCGGTGCGTTGAATGCCGGCATGCGTGGGGCCTTCATTGATCGACCAG
GCGCCCAACTCTACCCACCCTCTCAAGTTCCCGAAATCATCGAACCGGAT
CTGATTCAGATTTCTAAGCAACTCATCGCGATGAATTCTTAA
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