mRNA_M-pyrifera_M_contig101697.354.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101697.354.1
Unique NamemRNA_M-pyrifera_M_contig101697.354.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A5A8D611_CAFRO (Dynamin_N domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D611_CAFRO)

HSP 1 Score: 151 bits (381), Expect = 7.890e-41
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 1
Query:   16 PLNQRLLGPLGRASHEMLPRPTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            PLN+RL GPLG +S +MLPRP VFVLGNHSSGKSTFIN++LG+ VQ TGVAPTDDGFT++  G  + +QDG +LV DPD GF+ LR FG  LVSHVKLKVRSGL
Sbjct:   42 PLNKRLKGPLGASSQDMLPRPCVFVLGNHSSGKSTFINHILGRRVQTTGVAPTDDGFTIVSSGTDDIEQDGTALVSDPDAGFASLRRFGHALVSHVKLKVRSGL 145          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A5D6XUQ6_9STRA (Dynamin_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUQ6_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.650e-39
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 SQVLEPLNQRLLGPLGRA-SHEMLPR-PTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            +QVL PLN+R+LGPL R    E LP  P VF+LGNHSSGKSTFINY+L + VQ TGVAPTDDGFT+I PG ++ DQDGP+LVGDPDLGFSGLRA+G  LV   +LKVR G+
Sbjct:   54 AQVLLPLNERVLGPLDRRHKEEKLPALPFVFLLGNHSSGKSTFINYILRREVQSTGVAPTDDGFTIIAPGSADLDQDGPALVGDPDLGFSGLRAYGPALVQRTQLKVRKGI 164          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A813B1C1_9DINO (EHD2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B1C1_9DINO)

HSP 1 Score: 147 bits (370), Expect = 1.880e-39
Identity = 69/108 (63.89%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    4 QVLEPLNQRLLGPLGRASHEMLPRPTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            ++L PLN  +LGPL + S +  P+P V VLGNHSSGKSTFIN++ G+ VQ+TGVAPTDDGFTVI P   + ++DGP+LVGDPDLGF+GLR+FGS L++HV LK RSG+
Sbjct:   72 ELLTPLNAAVLGPLEKGSDQGTPQPLVLVLGNHSSGKSTFINHIAGKSVQETGVAPTDDGFTVIAPAHKDGERDGPALVGDPDLGFAGLRSFGSALINHVTLKQRSGM 179          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A2D4BKE8_PYTIN (Dynamin_N domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKE8_PYTIN)

HSP 1 Score: 147 bits (372), Expect = 4.900e-39
Identity = 77/111 (69.37%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 SQVLEPLNQRLLGPLGRAS-HEMLPR-PTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            SQVL PLN+RLLGPL R +  E LP  P VF+LGNHSSGKSTFINYLL + VQ TGVAPTDDGFT+I PG  + +QDGP+LVGDPDLGFSGLR FG  L+   +LKVR G+
Sbjct:  355 SQVLLPLNERLLGPLDRKNKEEKLPSLPFVFLLGNHSSGKSTFINYLLQREVQSTGVAPTDDGFTIIAPGSEDIEQDGPALVGDPDLGFSGLRGFGPALIQRTQLKVRKGI 465          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: M4BX01_HYAAE (Dynamin_N domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BX01_HYAAE)

HSP 1 Score: 145 bits (366), Expect = 5.510e-39
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 SQVLEPLNQRLLGPLGRA-SHEMLPR-PTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            S VL PLN++LLGPL R  S E LP  P VF+LGNHSSGKS+FINYLL + VQ TGVAPTDDGFT+I PG  + DQDGP+LVGDPDLGFSGLR +G  L+   +LKVR G+
Sbjct:   50 SSVLLPLNEKLLGPLDRKHSEEKLPSLPFVFLLGNHSSGKSSFINYLLQRDVQSTGVAPTDDGFTIIAPGHEDLDQDGPALVGDPDLGFSGLRTYGPALIQRTQLKVRKGI 160          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A7S2WTV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTV8_9STRA)

HSP 1 Score: 137 bits (344), Expect = 7.680e-39
Identity = 61/103 (59.22%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   10 LEPLNQRLLGPLGRASHEMLPRPTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVR 318
            ++PLN RL GPL R SH+    P V +LGNHSSGKS+F+N++LG+ +Q  GVAPTDD FT++ PG  + DQDGP+LVGDPD+GF+GLR FG  L+ H++LK+R
Sbjct:   46 IQPLNDRLSGPLERQSHKTTALPFVLLLGNHSSGKSSFVNHVLGRSIQTAGVAPTDDSFTIVAPGSKDIDQDGPALVGDPDMGFTGLRHFGPALIHHMRLKIR 148          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A8K1CRF5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRF5_PYTOL)

HSP 1 Score: 144 bits (362), Expect = 3.010e-38
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 SQVLEPLNQRLLGPLGRA-SHEMLPR-PTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            ++VL PLN+R+LGPL R    E LP  P VF+LGNHSSGKSTFINYLL + VQ TGVAPTDDGFT+I PG  + +QDGP+LVGDPDLGFSGLR FG  L+   +LKVR G+
Sbjct:   61 AKVLLPLNERILGPLDRKHKEEKLPSLPFVFLLGNHSSGKSTFINYLLQREVQSTGVAPTDDGFTIIAPGTEDIEQDGPALVGDPDLGFSGLRGFGPALIQRTQLKVRKGI 171          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A0N7L707_PLAHL (Rme1-like gtpase atpase without a c-terminal eh domain protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L707_PLAHL)

HSP 1 Score: 142 bits (359), Expect = 3.280e-38
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 SQVLEPLNQRLLGPLGRASHE-MLPR-PTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            ++VL PLN++LLGPL R   E  LP  P VF+LGNHSSGKS+FINYLL + VQ TGVAPTDDGFT+I PG ++ DQDGP+LVGDPDLGFSGLR +G  L+   +LKVR G+
Sbjct:    9 TKVLLPLNEKLLGPLDRKHREEKLPSLPFVFLLGNHSSGKSSFINYLLQRDVQSTGVAPTDDGFTIIAPGNADLDQDGPALVGDPDLGFSGLRIYGPALIQRTQLKVRKGI 119          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: A0A662WTV2_9STRA (G domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTV2_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.390e-38
Identity = 74/109 (67.89%), Postives = 85/109 (77.98%), Query Frame = 1
Query:    7 VLEPLNQRLLGPLGRASHE-MLPR-PTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            VL PLN++LLGPL R   E  LP  P VF+LGNHSSGKSTFINYLL + VQ TGVAPTDDGFT+I PG  + DQDGP+LVGDPDLGFSGLR +G  L+   +LKVR G+
Sbjct:   62 VLLPLNEKLLGPLDRKHREEKLPSLPFVFLLGNHSSGKSTFINYLLQRDVQSTGVAPTDDGFTIIAPGHEDIDQDGPALVGDPDLGFSGLRVYGPALIQRTQLKVRKGI 170          
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Match: H3H2V9_PHYRM (Dynamin_N domain-containing protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=H3H2V9_PHYRM)

HSP 1 Score: 142 bits (357), Expect = 1.100e-37
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 SQVLEPLNQRLLGPLGRASHE-MLPR-PTVFVLGNHSSGKSTFINYLLGQGVQDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSHVKLKVRSGL 327
            + VL PLN++LLGPL R   E  LP  P VF+LGNHSSGKS+FINYLL + VQ TGVAPTDDGFT+I PG  + DQDGP+LVGDPDLGFSGLR +G  L+   +LKVR G+
Sbjct:   52 TSVLLPLNEKLLGPLDRKHREEKLPSLPFVFLLGNHSSGKSSFINYLLQRDVQSTGVAPTDDGFTIIAPGSEDLDQDGPALVGDPDLGFSGLRVYGPALIQRTQLKVRQGI 162          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101697.354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D611_CAFRO7.890e-4171.15Dynamin_N domain-containing protein n=3 Tax=Cafete... [more]
A0A5D6XUQ6_9STRA1.650e-3968.47Dynamin_N domain-containing protein n=1 Tax=Pythiu... [more]
A0A813B1C1_9DINO1.880e-3963.89EHD2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A2D4BKE8_PYTIN4.900e-3969.37Dynamin_N domain-containing protein n=2 Tax=Pythiu... [more]
M4BX01_HYAAE5.510e-3967.57Dynamin_N domain-containing protein n=1 Tax=Hyalop... [more]
A0A7S2WTV8_9STRA7.680e-3959.22Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8K1CRF5_PYTOL3.010e-3866.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0N7L707_PLAHL3.280e-3865.77Rme1-like gtpase atpase without a c-terminal eh do... [more]
A0A662WTV2_9STRA3.390e-3867.89G domain-containing protein n=2 Tax=Nothophytophth... [more]
H3H2V9_PHYRM1.100e-3765.77Dynamin_N domain-containing protein n=23 Tax=Peron... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101697contigM-pyrifera_M_contig101697:332..658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue4.7e-33
Seed eggNOG ortholog115417.EPrPW00000015179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RME1L4, RME1-like GTPase ATPase without a C-terminal EH domain. Source PGD
EggNOG OGs1MD5U@121069,KOG1954@1,KOG1954@2759
COG Functional cat.TU
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.5989273-CDS-M-pyrifera_M_contig101697:331..6581622815515.5989273-CDS-M-pyrifera_M_contig101697:331..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101697 332..658 +
1692277446.0215044-CDS-M-pyrifera_M_contig101697:331..6581692277446.0215044-CDS-M-pyrifera_M_contig101697:331..658Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101697 332..658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101697.354.1prot_M-pyrifera_M_contig101697.354.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101697 332..658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101697.354.1

>prot_M-pyrifera_M_contig101697.354.1 ID=prot_M-pyrifera_M_contig101697.354.1|Name=mRNA_M-pyrifera_M_contig101697.354.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
SQVLEPLNQRLLGPLGRASHEMLPRPTVFVLGNHSSGKSTFINYLLGQGV
QDTGVAPTDDGFTVIVPGRSNEDQDGPSLVGDPDLGFSGLRAFGSPLVSH
VKLKVRSGL
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mRNA from alignment at M-pyrifera_M_contig101697:332..658+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101697.354.1 ID=mRNA_M-pyrifera_M_contig101697.354.1|Name=mRNA_M-pyrifera_M_contig101697.354.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig101697:332..658+ (Macrocystis pyrifera P11B4 male)
TCGCAGGTGTTGGAGCCGTTGAACCAGCGTTTGCTGGGTCCTTTGGGTCG TGCGAGCCACGAGATGCTCCCTCGTCCGACGGTGTTTGTGTTGGGGAACC ACAGCAGTGGGAAATCGACGTTTATCAACTACCTGCTCGGGCAGGGCGTG CAGGACACGGGAGTGGCTCCTACGGACGACGGGTTCACGGTGATCGTTCC GGGCCGCTCGAACGAGGACCAAGACGGCCCGTCGCTGGTGGGAGACCCCG ATTTGGGCTTTTCTGGGCTGCGCGCGTTCGGATCTCCGCTGGTGAGCCAC GTGAAGCTCAAGGTGCGGTCCGGGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101697:332..658+

>mRNA_M-pyrifera_M_contig101697.354.1 ID=mRNA_M-pyrifera_M_contig101697.354.1|Name=mRNA_M-pyrifera_M_contig101697.354.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig101697:332..658+ (Macrocystis pyrifera P11B4 male)
TCGCAGGTGTTGGAGCCGTTGAACCAGCGTTTGCTGGGTCCTTTGGGTCG
TGCGAGCCACGAGATGCTCCCTCGTCCGACGGTGTTTGTGTTGGGGAACC
ACAGCAGTGGGAAATCGACGTTTATCAACTACCTGCTCGGGCAGGGCGTG
CAGGACACGGGAGTGGCTCCTACGGACGACGGGTTCACGGTGATCGTTCC
GGGCCGCTCGAACGAGGACCAAGACGGCCCGTCGCTGGTGGGAGACCCCG
ATTTGGGCTTTTCTGGGCTGCGCGCGTTCGGATCTCCGCTGGTGAGCCAC
GTGAAGCTCAAGGTGCGGTCCGGGTTGTCGCAGGTGTTGGAGCCGTTGAA
CCAGCGTTTGCTGGGTCCTTTGGGTCGTGCGAGCCACGAGATGCTCCCTC
GTCCGACGGTGTTTGTGTTGGGGAACCACAGCAGTGGGAAATCGACGTTT
ATCAACTACCTGCTCGGGCAGGGCGTGCAGGACACGGGAGTGGCTCCTAC
GGACGACGGGTTCACGGTGATCGTTCCGGGCCGCTCGAACGAGGACCAAG
ACGGCCCGTCGCTGGTGGGAGACCCCGATTTGGGCTTTTCTGGGCTGCGC
GCGTTCGGATCTCCGCTGGTGAGCCACGTGAAGCTCAAGGTGCGGTCCGG
GTTG
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