mRNA_M-pyrifera_M_contig101681.347.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101681.347.1
Unique NamemRNA_M-pyrifera_M_contig101681.347.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: L8H046_ACACA (Metallophos domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H046_ACACA)

HSP 1 Score: 146 bits (368), Expect = 1.990e-38
Identity = 70/173 (40.46%), Postives = 106/173 (61.27%), Query Frame = 1
Query:    1 NITCYFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQTVQGISKNYG 519
            NI  +FQNW L  +   F+GLDW +R HA + LGY G  PG  L NF    GGT+P+L ++L ++   N + +V  QHHPF++P  +PE +Y FS + K QI   M  +   ++YWGV+AGH+HIW++G AFP+  +     QW T A K  ++F+++ + D  +  + K +G
Sbjct:  323 NINSWFQNWELQYDNFVFYGLDWISRAHAVSQLGYKGGWPGAALQNFP---GGTYPWLQQRLEALKNDNKT-VVFLQHHPFAMPIYIPEIIYSFSYEDKTQILKLMMANGQQDKYWGVIAGHLHIWFDGQAFPYTHQR----QWLTEATKTGSSFTLVKVRDGRIVSLEKLFG 487          
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: A0A819ICF7_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A819ICF7_9BILA)

HSP 1 Score: 123 bits (308), Expect = 7.010e-31
Identity = 71/171 (41.52%), Postives = 103/171 (60.23%), Query Frame = 1
Query:   13 YFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQT--VQGISKNYG 519
            +FQN+RL L    F  LDWN+R HAA  LGY G+MPG  L++F    GGTF +L+EQL  +    +S I+L QHHPF  P  +P  +Y FS  ++ +I   ++++ ++  Y+GV AGH H+W +G AF   D      Q+ET ACK + A +++T   +T  +  I K YG
Sbjct:  156 WFQNYRLQLHNNIFISLDWNSRHHAAASLGYKGSMPGADLYDFN---GGTFSWLEEQLKQLE-KQSSTIILLQHHPFRAPFYIPGEIYAFSELKRLRIEYLLRQYTSLN-YFGVFAGHFHMWSDGKAF---DNMPKFRQFETDACKVAQAVALVTANIKTGEIMKIEKMYG 318          
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: A0A814JM25_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A814JM25_9BILA)

HSP 1 Score: 119 bits (299), Expect = 1.530e-29
Identity = 69/171 (40.35%), Postives = 102/171 (59.65%), Query Frame = 1
Query:   13 YFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQT--VQGISKNYG 519
            +FQN+R+ +    F  LDWN+R HAA  LGY G+MPG  L++F    GGTF +L+EQL  +    +S IVL QH P+  P  +P  +Y F   ++ +I   +++H ++  Y+GV AGH H+W +GTAF   D      Q+ET ACK + A +++T   +T  +  I K YG
Sbjct:  156 WFQNYRIQIHNNIFIALDWNSRHHAAASLGYKGSMPGADLYDFN---GGTFRWLEEQLQQLD-KQSSTIVLLQHQPYRAPFYIPGEIYAFGEAKRLRINHLLRQHSSLN-YFGVFAGHFHMWSDGTAF---DNMPKFRQFETDACKVAQAIALVTANIKTGEIIKIEKLYG 318          
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: A0A819QMI2_9BILA (Hypothetical protein n=5 Tax=Rotaria sordida TaxID=392033 RepID=A0A819QMI2_9BILA)

HSP 1 Score: 123 bits (308), Expect = 1.970e-29
Identity = 71/171 (41.52%), Postives = 103/171 (60.23%), Query Frame = 1
Query:   13 YFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQT--VQGISKNYG 519
            +FQN+RL L    F  LDWN+R HAA  LGY G+MPG  L++F    GGTF +L+EQL  +    +S I+L QHHPF  P  +P  +Y FS  ++ +I   ++++ ++  Y+GV AGH H+W +G AF   D      Q+ET ACK + A +++T   +T  +  I K YG
Sbjct:  486 WFQNYRLQLHNNIFISLDWNSRHHAAASLGYKGSMPGADLYDFN---GGTFSWLEEQLKQLE-KQSSTIILLQHHPFRAPFYIPGEIYAFSELKRLRIEYLLRQYTSLN-YFGVFAGHFHMWSDGKAF---DNMPKFRQFETDACKVAQAVALVTANIKTGEIMKIEKMYG 648          
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: A0A814TLZ7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814TLZ7_ADIRI)

HSP 1 Score: 118 bits (296), Expect = 4.150e-29
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query:   13 YFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQT--VQGISKNYG 519
            +FQN+RL +    F  LDWN+R HA   LGY G+MPG  L+ F    GGT+ +L+ QL  +     S IVL QH PF  P  +P  +Y F   ++ ++   ++ H +++ Y+GV AGH H+W +GTAF   D+     Q+ET ACK + A +++T   QT  +  I K YG
Sbjct:  156 WFQNYRLQIHNNIFIALDWNSRHHAVASLGYKGSMPGADLYEFQ---GGTYSWLEAQLGQLE-KQRSTIVLLQHQPFRAPFYIPGEIYAFGEGKRLRVDHLLRRHSSLK-YFGVFAGHFHMWSDGTAF---DDMPKFRQFETDACKVAQAIALVTANIQTGEIMSIEKLYG 318          
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: A0A819BN58_9BILA (Hypothetical protein n=6 Tax=Adineta steineri TaxID=433720 RepID=A0A819BN58_9BILA)

HSP 1 Score: 119 bits (297), Expect = 5.160e-28
Identity = 69/171 (40.35%), Postives = 102/171 (59.65%), Query Frame = 1
Query:   13 YFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQT--VQGISKNYG 519
            +FQN+R+ +    F  LDWN+R HAA  LGY G+MPG  L++F    GGTF +L+EQL  +    +S IVL QH P+  P  +P  +Y F   ++ +I   +++H ++  Y+GV AGH H+W +GTAF   D      Q+ET ACK + A +++T   +T  +  I K YG
Sbjct:  421 WFQNYRIQIHNNIFIALDWNSRHHAAASLGYKGSMPGADLYDFN---GGTFRWLEEQLQQLD-KQSSTIVLLQHQPYRAPFYIPGEIYAFGEAKRLRIDHLLRQHSSLN-YFGVFAGHFHMWSDGTAF---DNMPKFRQFETDACKVAQAIALVTANIKTGEIIKIEKLYG 583          
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: A0A820MYW8_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820MYW8_9BILA)

HSP 1 Score: 118 bits (296), Expect = 6.410e-28
Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 1
Query:   13 YFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQT--VQGISKNYG 519
            +FQN+R+ +    F  LDW++R HAA  LGY G+MPG  L++F    GGTF +L+EQL  +    +S IVL QHHPF  P  +P  +Y F   ++ +I   +++H  +  Y+GV AGH H+W +G AF   D      Q+ET ACK + A + +T   +T  +  I K YG
Sbjct:  400 WFQNYRIQINNNVFISLDWSSRHHAAGSLGYKGSMPGADLYDFN---GGTFLWLEEQLKQLE-KQSSTIVLLQHHPFRAPFYIPGEIYAFGETKRLRIEHLLRQH-TLLNYFGVFAGHFHMWSDGKAF---DNMPKFRQFETDACKVAQAIAFVTANIKTGEIVKIEKMYG 562          
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Match: A0A820CLT3_9BILA (Hypothetical protein n=8 Tax=Rotaria TaxID=231623 RepID=A0A820CLT3_9BILA)

HSP 1 Score: 113 bits (283), Expect = 3.830e-27
Identity = 69/173 (39.88%), Postives = 101/173 (58.38%), Query Frame = 1
Query:   13 YFQNWRLDLEG--MTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNGAGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKNQIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACKRSAAFSIMTIEDQT--VQGISKNYG 519
            +FQN+R+ L     +F  LDWN+R HAA  LGY G+MPG  L++F    GGTF +L+EQL  +     S IVL QH PF  P  +P  +Y F   ++ +I   +++  ++  Y+GV AGH H+W +G AF   D+     Q+ET ACK + A +++T   +T  +  I K YG
Sbjct:  156 WFQNYRIQLHNNSSSFIALDWNSRHHAAASLGYKGSMPGADLYDFN---GGTFSWLEEQLKQLE-KQPSTIVLLQHQPFRAPFYIPGEIYAFGESKRLRIEHLLRQFTSLN-YFGVFAGHFHMWSDGKAF---DDMPKFRQFETDACKVAQAIALVTANIKTGEIVKIEKMYG 320          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101681.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
L8H046_ACACA1.990e-3840.46Metallophos domain-containing protein n=1 Tax=Acan... [more]
A0A819ICF7_9BILA7.010e-3141.52Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]
A0A814JM25_9BILA1.530e-2940.35Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A819QMI2_9BILA1.970e-2941.52Hypothetical protein n=5 Tax=Rotaria sordida TaxID... [more]
A0A814TLZ7_ADIRI4.150e-2939.77Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A819BN58_9BILA5.160e-2840.35Hypothetical protein n=6 Tax=Adineta steineri TaxI... [more]
A0A820MYW8_9BILA6.410e-2840.35Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0A820CLT3_9BILA3.830e-2739.88Hypothetical protein n=8 Tax=Rotaria TaxID=231623 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101681contigM-pyrifera_M_contig101681:137..655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size519
Cds size519
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.1678255-CDS-M-pyrifera_M_contig101681:136..6551622815515.1678255-CDS-M-pyrifera_M_contig101681:136..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101681 137..655 -
1692277445.8980076-CDS-M-pyrifera_M_contig101681:136..6551692277445.8980076-CDS-M-pyrifera_M_contig101681:136..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101681 137..655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101681.347.1prot_M-pyrifera_M_contig101681.347.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101681 137..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101681.347.1

>prot_M-pyrifera_M_contig101681.347.1 ID=prot_M-pyrifera_M_contig101681.347.1|Name=mRNA_M-pyrifera_M_contig101681.347.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=173bp
NITCYFQNWRLDLEGMTFFGLDWNTRGHAATHLGYLGAMPGCRLHNFTNG
AGGTFPFLDEQLASVAVSNASNIVLFQHHPFSLPPLVPEPLYGFSMQQKN
QIRASMQEHHAIEQYWGVVAGHMHIWWNGTAFPWQDEWASSWQWETCACK
RSAAFSIMTIEDQTVQGISKNYG
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mRNA from alignment at M-pyrifera_M_contig101681:137..655-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101681.347.1 ID=mRNA_M-pyrifera_M_contig101681.347.1|Name=mRNA_M-pyrifera_M_contig101681.347.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig101681:137..655- (Macrocystis pyrifera P11B4 male)
AACATCACCTGCTACTTCCAGAACTGGCGCCTCGACCTCGAGGGCATGAC GTTCTTCGGCCTCGACTGGAACACTCGCGGCCACGCGGCAACGCACCTCG GCTACCTGGGCGCCATGCCTGGCTGTAGGCTACACAACTTCACCAATGGT GCAGGCGGTACCTTTCCCTTCCTCGATGAGCAGCTGGCGAGCGTTGCAGT GAGCAACGCCAGCAACATTGTTCTCTTCCAGCACCACCCCTTCTCCCTGC CCCCGCTCGTGCCCGAGCCTCTCTATGGCTTTAGCATGCAACAAAAGAAC CAAATCCGCGCCTCAATGCAGGAGCATCACGCCATTGAGCAGTACTGGGG CGTCGTCGCAGGCCACATGCACATCTGGTGGAACGGCACTGCGTTCCCCT GGCAAGACGAGTGGGCCTCTTCCTGGCAGTGGGAGACGTGCGCATGCAAG CGGTCGGCAGCGTTCTCGATCATGACCATTGAAGACCAGACAGTGCAAGG CATCTCGAAGAACTACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101681:137..655-

>mRNA_M-pyrifera_M_contig101681.347.1 ID=mRNA_M-pyrifera_M_contig101681.347.1|Name=mRNA_M-pyrifera_M_contig101681.347.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1038bp|location=Sequence derived from alignment at M-pyrifera_M_contig101681:137..655- (Macrocystis pyrifera P11B4 male)
AACATCACCTGCTACTTCCAGAACTGGCGCCTCGACCTCGAGGGCATGAC
GTTCTTCGGCCTCGACTGGAACACTCGCGGCCACGCGGCAACGCACCTCG
GCTACCTGGGCGCCATGCCTGGCTGTAGGCTACACAACTTCACCAATGGT
GCAGGCGGTACCTTTCCCTTCCTCGATGAGCAGCTGGCGAGCGTTGCAGT
GAGCAACGCCAGCAACATTGTTCTCTTCCAGCACCACCCCTTCTCCCTGC
CCCCGCTCGTGCCCGAGCCTCTCTATGGCTTTAGCATGCAACAAAAGAAC
CAAATCCGCGCCTCAATGCAGGAGCATCACGCCATTGAGCAGTACTGGGG
CGTCGTCGCAGGCCACATGCACATCTGGTGGAACGGCACTGCGTTCCCCT
GGCAAGACGAGTGGGCCTCTTCCTGGCAGTGGGAGACGTGCGCATGCAAG
CGGTCGGCAGCGTTCTCGATCATGACCATTGAAGACCAGACAGTGCAAGG
CATCTCGAAGAACTACGGCAACATCACCTGCTACTTCCAGAACTGGCGCC
TCGACCTCGAGGGCATGACGTTCTTCGGCCTCGACTGGAACACTCGCGGC
CACGCGGCAACGCACCTCGGCTACCTGGGCGCCATGCCTGGCTGTAGGCT
ACACAACTTCACCAATGGTGCAGGCGGTACCTTTCCCTTCCTCGATGAGC
AGCTGGCGAGCGTTGCAGTGAGCAACGCCAGCAACATTGTTCTCTTCCAG
CACCACCCCTTCTCCCTGCCCCCGCTCGTGCCCGAGCCTCTCTATGGCTT
TAGCATGCAACAAAAGAACCAAATCCGCGCCTCAATGCAGGAGCATCACG
CCATTGAGCAGTACTGGGGCGTCGTCGCAGGCCACATGCACATCTGGTGG
AACGGCACTGCGTTCCCCTGGCAAGACGAGTGGGCCTCTTCCTGGCAGTG
GGAGACGTGCGCATGCAAGCGGTCGGCAGCGTTCTCGATCATGACCATTG
AAGACCAGACAGTGCAAGGCATCTCGAAGAACTACGGC
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