mRNA_M-pyrifera_M_contig101676.346.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101676.346.1
Unique NamemRNA_M-pyrifera_M_contig101676.346.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101676.346.1 vs. uniprot
Match: A0A836HQ71_9TRYP (Uncharacterized protein n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836HQ71_9TRYP)

HSP 1 Score: 53.1 bits (126), Expect = 3.100e-5
Identity = 55/179 (30.73%), Postives = 82/179 (45.81%), Query Frame = 1 
Query:   16 SLTLQVSSGKDTAVHQACYQGRGDALLWLQARVTPESLYAPTLTKRTPLHIAAKHYNAELFEALLEMLPE-----EKLLLKCEV--------------GQTALHVLACNGNPLQLMVAALP--AAALYERDQASNTPLHYAVEFCQTEEVEALLDALPPEH--RAD-PDRFGWTPLHQA 480
            S T+Q   G  TA+H AC  G  +   +L       S +      + P+H+A      +L EAL+E   E     E LL +C+               GQTALH     G     M+  L    A+   +D+A  TPL  A+EFC  E ++A+L+ +P ++  R D  D+ G++ LH A
Sbjct:   41 SPTIQNRFGC-TALHLACKFGCVETAKYLARAAEVHSSWHG----QKPVHLAVMANKLDLVEALVEGAKERGQLPEILLNECDEREVHEIGSHVKHCRGQTALHWCVGLGKEYLPMIKLLVQLGASPTAKDKADETPLMRAMEFCNREALDAMLENIPNKNSLRLDYADKKGYSHLHWA 214
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101676.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836HQ71_9TRYP3.100e-530.73Uncharacterized protein n=1 Tax=Porcisia hertigi T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101676contigM-pyrifera_M_contig101676:186..665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size480
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.1341262-CDS-M-pyrifera_M_contig101676:185..6651622815515.1341262-CDS-M-pyrifera_M_contig101676:185..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101676 186..665 +
1692277445.8744614-CDS-M-pyrifera_M_contig101676:185..6651692277445.8744614-CDS-M-pyrifera_M_contig101676:185..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101676 186..665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101676.346.1prot_M-pyrifera_M_contig101676.346.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101676 186..665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101676.346.1

>prot_M-pyrifera_M_contig101676.346.1 ID=prot_M-pyrifera_M_contig101676.346.1|Name=mRNA_M-pyrifera_M_contig101676.346.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
MHGKESLTLQVSSGKDTAVHQACYQGRGDALLWLQARVTPESLYAPTLTK
RTPLHIAAKHYNAELFEALLEMLPEEKLLLKCEVGQTALHVLACNGNPLQ
LMVAALPAAALYERDQASNTPLHYAVEFCQTEEVEALLDALPPEHRADPD
RFGWTPLHQA
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mRNA from alignment at M-pyrifera_M_contig101676:186..665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101676.346.1 ID=mRNA_M-pyrifera_M_contig101676.346.1|Name=mRNA_M-pyrifera_M_contig101676.346.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig101676:186..665+ (Macrocystis pyrifera P11B4 male)
ATGCATGGAAAGGAAAGCCTCACCTTGCAGGTGTCCTCGGGGAAGGATAC
TGCGGTGCACCAGGCTTGCTACCAAGGGCGAGGCGATGCTCTGCTGTGGC
TGCAGGCGAGGGTTACGCCAGAAAGTCTCTACGCTCCCACCCTCACGAAG
AGGACGCCACTTCACATTGCAGCGAAGCACTACAACGCAGAGTTGTTCGA
GGCGCTCCTTGAGATGTTGCCTGAGGAGAAGCTCCTCCTGAAGTGTGAGG
TGGGGCAGACTGCCCTTCATGTGCTCGCTTGCAATGGAAATCCGCTGCAG
CTGATGGTGGCAGCGCTGCCAGCCGCCGCACTCTATGAGAGGGATCAGGC
CAGCAACACTCCCCTCCACTATGCAGTCGAGTTCTGTCAGACGGAGGAGG
TGGAGGCTCTCCTGGACGCATTGCCGCCAGAGCACCGAGCGGACCCCGAT
CGCTTTGGCTGGACACCTCTGCACCAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101676:186..665+

>mRNA_M-pyrifera_M_contig101676.346.1 ID=mRNA_M-pyrifera_M_contig101676.346.1|Name=mRNA_M-pyrifera_M_contig101676.346.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig101676:186..665+ (Macrocystis pyrifera P11B4 male)
ATGCATGGAAAGGAAAGCCTCACCTTGCAGGTGTCCTCGGGGAAGGATAC
TGCGGTGCACCAGGCTTGCTACCAAGGGCGAGGCGATGCTCTGCTGTGGC
TGCAGGCGAGGGTTACGCCAGAAAGTCTCTACGCTCCCACCCTCACGAAG
AGGACGCCACTTCACATTGCAGCGAAGCACTACAACGCAGAGTTGTTCGA
GGCGCTCCTTGAGATGTTGCCTGAGGAGAAGCTCCTCCTGAAGTGTGAGG
TGGGGCAGACTGCCCTTCATGTGCTCGCTTGCAATGGAAATCCGCTGCAG
CTGATGGTGGCAGCGCTGCCAGCCGCCGCACTCTATGAGAGGGATCAGGC
CAGCAACACTCCCCTCCACTATGCAGTCGAGTTCTGTCAGACGGAGGAGG
TGGAGGCTCTCCTGGACGCATTGCCGCCAGAGCACCGAGCGGACCCCGAT
CGCTTTGGCTGGACACCTCTGCACCAGGCGATGCATGGAAAGGAAAGCCT
CACCTTGCAGGTGTCCTCGGGGAAGGATACTGCGGTGCACCAGGCTTGCT
ACCAAGGGCGAGGCGATGCTCTGCTGTGGCTGCAGGCGAGGGTTACGCCA
GAAAGTCTCTACGCTCCCACCCTCACGAAGAGGACGCCACTTCACATTGC
AGCGAAGCACTACAACGCAGAGTTGTTCGAGGCGCTCCTTGAGATGTTGC
CTGAGGAGAAGCTCCTCCTGAAGTGTGAGGTGGGGCAGACTGCCCTTCAT
GTGCTCGCTTGCAATGGAAATCCGCTGCAGCTGATGGTGGCAGCGCTGCC
AGCCGCCGCACTCTATGAGAGGGATCAGGCCAGCAACACTCCCCTCCACT
ATGCAGTCGAGTTCTGTCAGACGGAGGAGGTGGAGGCTCTCCTGGACGCA
TTGCCGCCAGAGCACCGAGCGGACCCCGATCGCTTTGGCTGGACACCTCT
GCACCAGGCG
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