mRNA_M-pyrifera_M_contig101673.344.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101673.344.1
Unique NamemRNA_M-pyrifera_M_contig101673.344.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: UPI001A22FD6E (S8 family serine peptidase n=1 Tax=Myxococcaceae bacterium JPH2 TaxID=2799617 RepID=UPI001A22FD6E)

HSP 1 Score: 62.4 bits (150), Expect = 4.250e-8
Identity = 58/166 (34.94%), Postives = 86/166 (51.81%), Query Frame = 1
Query:   37 GDTLALSASSNPFFATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNG-TAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGYTVRFSASST 531
            G T+ +   +NP   TLSG TS     G A F   ++++ G G  +   G  NG T  TTA+  F + P V A++     P  VLA GE+FS  + +   +G  N +   T VT +L+       +GA+L G  +  AV GVVTF+ LS++  G GY ++  A+ T
Sbjct: 1893 GTTVTVVLGNNPSSGTLSGATSVAAVNGVATFSTLSINKVGTGYTLAVGG--NGLTGATTAA--FDVQPGVAAQLVFEQGPAAVLATGEAFSARVAVLDAQG--NKTHGTTRVTLSLV-----NAAGATLSGTTAANAVDGVVTFTGLSVAKAGTGYALKAEATGT 2047          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: A0A2V7GPY5_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7GPY5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.700e-7
Identity = 59/175 (33.71%), Postives = 91/175 (52.00%), Query Frame = 1
Query:    1 VRVTAGDSRG--AAGDT--LALSASSNPFFATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMT-TASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGYTV 510
            V+VTA D++G  A+G T  + ++  +NP   TL+GT +     G A F G ++ ++G G  +TA    N T +T + S  F I P    R+    +P N  +AG + +  + +   +G+ N   + T      +     GG+   L G V+V AV GV TFSNLS+  VG GYT+
Sbjct: 5294 VQVTAQDAQGNTASGFTGNITVAIGANPGGGTLAGTATVAAVAGVASFGGLSIDKTGTGYTLTA----NATGLTGSTSSAFNIQPAAANRLVFTGQPTNT-SAGATITPAVTVAVEDGLGNTVTTFTGNVTVAIGTNPGGGT---LSGTVTVAAVAGVATFSNLSIDKVGAGYTL 5460          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: A0A7Y2JSI2_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7Y2JSI2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.600e-6
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   43 TLALSASSNPFFATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMTTASQPFAIV--PQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGYTVRFSAS 525
            T++LS  +NP  +TLSG  +ST+ GG A F    L ++G G  + A+ T  G    T S PFAI   P V    RV        AAG   +  + +   +G  NA  S ++     +    S   G++L G   V A+QG+ TFS+LSL+  G GYT+R S+S
Sbjct:  330 TVSLSIGANPGGSTLSGVPASTVVGGVARFADIRLDKAGNGYTLVASRT--GLPGAT-SAPFAITAGPPVAVEYRVEP---TTAAAGAPITPPVRVAVVDGFGNAVTSSSVPIDIQIA---SNPGGSTLSGTTRVDAIQGIATFSDLSLNKTGSGYTLRASSS 483          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: UPI0013DC2136 (hypothetical protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI0013DC2136)

HSP 1 Score: 57.0 bits (136), Expect = 2.880e-6
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   79 ATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGYTV 510
            ATL+GT S+T+  G A F+  ++ ++G G ++ A+    G+     S  FAI+P   AR+  V+ P     AG +F   + +   +   N + S   V   L   G + G+ A+L+G  SV AV G+ TFSNLS++   +GYT+
Sbjct:  303 ATLAGTLSATVAAGVASFDTLSIRKAGTGYLLRAS---FGSLTAADSSAFAIIPAAAARLAYVAAPAAA-TAGSAFEPAVQVELLDAYDNRTPSTATVEVGL---GANPGN-ATLNGTRSVSAVDGLATFSNLSINVAAQGYTL 438          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: UPI001CCAAC33 (S8 family serine peptidase n=1 Tax=Cystobacter gracilis TaxID=394092 RepID=UPI001CCAAC33)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-6
Identity = 54/147 (36.73%), Postives = 77/147 (52.38%), Query Frame = 1
Query:   82 TLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGYTVRFSA 522
            TLSGTT+     G A F   ++ + G G  + AA     T +TT    F I P   A+M  +S+P     AG+S +  + +   +   N +D+ T V+ AL   G++ G G  L G  +V +V GV TFSNLS+  VG GYT+  SA
Sbjct: 1080 TLSGTTTVAAVNGVATFGDLSIEKVGEGYTL-AASADGLTGVTT--DGFDITPAAPAKMAFLSQP-GTTKAGDSITPAVTVMILDAFDNTTDAVTEVSVAL---GNNPGEGR-LSGTTTVESVNGVATFSNLSIDKVGTGYTLEASA 1218          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: A0A1Q3HND1_9DELT (Peptidase_S8 domain-containing protein n=3 Tax=Archangium TaxID=47 RepID=A0A1Q3HND1_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 1.010e-5
Identity = 49/143 (34.27%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   82 TLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMTTA-SQPFAIVPQVLARMRVVSRPLNVLAAGESF--SVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRG 501
            TLSGTT+S +  G A+F   ++ + G G  +TA    + T +T A S  F I P    ++  V++P  V  AG +   +V + ++ R G    S ++ ++  +  P G      A+L G  +V AV+GV TFSNLSL+ +G G
Sbjct:  982 TLSGTTTSAMSSGVAMFGNLSIDKVGTGYTLTA----SATGLTGATSSTFNITPAAANKLAFVTQPSTV-GAGATIDPAVQVAIQDRFGNVTTSTANVVLALSASPGG------ATLSGTTTVAAVKGVATFSNLSLNKMGTG 1113          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: A0A1Q7JTY9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium 13_1_40CM_4_69_8 TaxID=1805193 RepID=A0A1Q7JTY9_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.410e-5
Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 1
Query:    1 VRVTAGDSRGAAGDT----LALSASSNPFFATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDT-IVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGYTVRFSA 522
            V+VTA D+ G    +    + ++  +NP  A LSGT++     G A     +L ++G G  +TAAG  +G A    S  F +      R+    +P N   AG + + G+ +  ++G+ N     T  VT A+   G++ GSG  L G  +V AV GV TFS LS++ VG GYT+  +A
Sbjct:  842 VQVTAQDALGNTATSYTGNVVIAIGNNPGGAALSGTSTMAAVSGVATLGDLSLDKAGTGYTLTAAG--SGVAGGATSAAFTVTAAAANRLVFTVQPSNA-TAGAAIAPGVQVTAQDGLGNTVTGFTGNVTVAI---GNNPGSGT-LSGTATVPAVNGVATFSTLSINRVGGGYTLTAAA 1013          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: UPI001F18DCCB (S8 family serine peptidase n=1 Tax=Citreicoccus inhibens TaxID=2849499 RepID=UPI001F18DCCB)

HSP 1 Score: 54.3 bits (129), Expect = 2.530e-5
Identity = 54/163 (33.13%), Postives = 81/163 (49.69%), Query Frame = 1
Query:   37 GDTLALSASSNPFFATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNG-TAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGYTVRFSA 522
            G  + ++  +NP   TLSGTTS     G A F   ++++ G G  +   G  NG T  TTA+  F + P   A++     P   LA+GE FS  + +   +G  N +   T V+ +L        +GA+L G   V AV GV TF+ LS++  G GY ++  A
Sbjct: 1661 GTVVTVALGNNPSGGTLSGTTSVAAVNGVAAFSDLSINKVGTGYTLAVGG--NGLTGATTAA--FDVQPGAAAQLVFEQGPAAALASGEVFSARVAVLDAQG--NKTHGTTQVSLSLA-----NAAGATLRGNTVVNAVDGVATFTLLSVAKAGTGYMLKAEA 1812          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: A0A250ILF5_9DELT (Peptidase S8 n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250ILF5_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 3.390e-5
Identity = 49/154 (31.82%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   52 LSASSNPFFATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGL---LMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGY 504
            LS ++NP   TLSGTT++T   G A F G T+ ++G G  + A  TV G    T+S  F I P    ++  +++P     AG++ +  +   ++ T   V  +S ++  +     P G       SL G ++V A+ GV TFS+LS + V   Y
Sbjct: 1336 LSIANNPGGGTLSGTTTATTSAGVATFTGLTVDKTGVGYTLKA--TVTGLDEATSSS-FTIAPATANKLAFLAQPPATTVAGQALTPAVRVAILDTYGNVQTSSKANVTLAQGAGPAG-------SLAGTLTVAAIDGVATFSDLSFTKVSADY 1479          
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Match: UPI001956BF40 (S8 family serine peptidase n=1 Tax=Archangium primigenium TaxID=2792470 RepID=UPI001956BF40)

HSP 1 Score: 53.1 bits (126), Expect = 6.230e-5
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = 1
Query:    1 VRVTAGDSRGAA----GDTLALSASSNPFFATLSGTTSSTLRGGSALFEGTTLSRSGAGVVMTAAGTVNGTAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGESFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAVQGVVTFSNLSLSAVGRGY 504
            VRV   D+ GA       T+ LS ++NP  ATLSGTT++T   G A F   +L+++G G  + A  TV+G    T+S  F I     +++  +++P    AAG      +    R  V ++ D+    + A +    + G    + G ++V AV GV TFS+L+ + VG GY
Sbjct: 1358 VRVAIQDASGATVTTGSYTVTLSLANNPGGATLSGTTTATTSSGVATFTNLSLNKTGVGYTLKA--TVSGLDEGTSSS-FTISAAAASKLAFLTQPPATTAAGV-----VTPAVRVAVLDSFDNVQTASTANVTLAQTAGPTGGITGTLTVAAVDGVATFSDLTATKVGTGY 1521          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101673.344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI001A22FD6E4.250e-834.94S8 family serine peptidase n=1 Tax=Myxococcaceae b... [more]
A0A2V7GPY5_9BACT3.700e-733.71Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
A0A7Y2JSI2_9BACT2.600e-636.20BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
UPI0013DC21362.880e-634.03hypothetical protein n=1 Tax=Pyxidicoccus trucidat... [more]
UPI001CCAAC335.450e-636.73S8 family serine peptidase n=1 Tax=Cystobacter gra... [more]
A0A1Q3HND1_9DELT1.010e-534.27Peptidase_S8 domain-containing protein n=3 Tax=Arc... [more]
A0A1Q7JTY9_9BACT1.410e-533.52Uncharacterized protein (Fragment) n=1 Tax=Gemmati... [more]
UPI001F18DCCB2.530e-533.13S8 family serine peptidase n=1 Tax=Citreicoccus in... [more]
A0A250ILF5_9DELT3.390e-531.82Peptidase S8 n=1 Tax=Melittangium boletus DSM 1471... [more]
UPI001956BF406.230e-532.56S8 family serine peptidase n=1 Tax=Archangium prim... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101673contigM-pyrifera_M_contig101673:35..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.4
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog378806.STAUR_3085
Preferred namebhp
KEGG koko:K07004,ko:K09955,ko:K13735,ko:K20276,ko:K21449
KEGG TC1.B.40.2
KEGG Pathwayko02024,ko05100,map02024,map05100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fibronectin type 3 domain
EggNOG OGs1REF1@1224,2WS51@28221,2YWNR@29,42Q4N@68525,COG1404@1,COG1404@2,COG4412@1,COG4412@2
COG Functional cat.O
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815515.0610394-CDS-M-pyrifera_M_contig101673:34..5681622815515.0610394-CDS-M-pyrifera_M_contig101673:34..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101673 35..568 +
1692277445.8464768-CDS-M-pyrifera_M_contig101673:34..5681692277445.8464768-CDS-M-pyrifera_M_contig101673:34..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101673 35..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101673.344.1prot_M-pyrifera_M_contig101673.344.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101673 35..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101673.344.1

>prot_M-pyrifera_M_contig101673.344.1 ID=prot_M-pyrifera_M_contig101673.344.1|Name=mRNA_M-pyrifera_M_contig101673.344.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
VRVTAGDSRGAAGDTLALSASSNPFFATLSGTTSSTLRGGSALFEGTTLS
RSGAGVVMTAAGTVNGTAMTTASQPFAIVPQVLARMRVVSRPLNVLAAGE
SFSVGLLMRTREGVTNASDSDTIVTAALLPDGHSGGSGASLHGEVSVRAV
QGVVTFSNLSLSAVGRGYTVRFSASSTS
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mRNA from alignment at M-pyrifera_M_contig101673:35..568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101673.344.1 ID=mRNA_M-pyrifera_M_contig101673.344.1|Name=mRNA_M-pyrifera_M_contig101673.344.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig101673:35..568+ (Macrocystis pyrifera P11B4 male)
GTGCGGGTGACGGCGGGCGACTCGCGCGGCGCAGCTGGGGACACGCTGGC GCTCTCCGCCTCCTCCAACCCGTTCTTCGCCACGCTCTCCGGCACCACCT CCTCCACCTTGCGCGGCGGTAGCGCGCTGTTCGAGGGCACGACGCTGTCG CGCTCCGGCGCGGGCGTCGTGATGACAGCGGCCGGCACCGTGAACGGCAC CGCCATGACAACGGCGTCGCAACCGTTCGCGATCGTGCCGCAGGTGCTGG CGCGCATGCGCGTCGTGTCCCGCCCGCTCAACGTGCTGGCGGCGGGCGAG AGCTTCTCCGTCGGCCTGCTCATGCGCACGCGGGAGGGCGTCACCAACGC GAGCGACTCGGACACTATCGTCACGGCCGCGCTACTGCCCGACGGTCACT CCGGCGGCTCCGGCGCCTCGCTGCATGGCGAGGTGTCCGTGCGCGCGGTG CAGGGCGTGGTGACGTTCAGCAACCTGTCGCTGTCCGCCGTTGGCCGCGG CTACACCGTGCGGTTCTCCGCGTCCAGCACTTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101673:35..568+

>mRNA_M-pyrifera_M_contig101673.344.1 ID=mRNA_M-pyrifera_M_contig101673.344.1|Name=mRNA_M-pyrifera_M_contig101673.344.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig101673:35..568+ (Macrocystis pyrifera P11B4 male)
GTGCGGGTGACGGCGGGCGACTCGCGCGGCGCAGCTGGGGACACGCTGGC
GCTCTCCGCCTCCTCCAACCCGTTCTTCGCCACGCTCTCCGGCACCACCT
CCTCCACCTTGCGCGGCGGTAGCGCGCTGTTCGAGGGCACGACGCTGTCG
CGCTCCGGCGCGGGCGTCGTGATGACAGCGGCCGGCACCGTGAACGGCAC
CGCCATGACAACGGCGTCGCAACCGTTCGCGATCGTGCCGCAGGTGCTGG
CGCGCATGCGCGTCGTGTCCCGCCCGCTCAACGTGCTGGCGGCGGGCGAG
AGCTTCTCCGTCGGCCTGCTCATGCGCACGCGGGAGGGCGTCACCAACGC
GAGCGACTCGGACACTATCGTCACGGCCGCGCTACTGCCCGACGGTCACT
CCGGCGGCTCCGGCGCCTCGCTGCATGGCGAGGTGTCCGTGCGCGCGGTG
CAGGGCGTGGTGACGTTCAGCAACCTGTCGCTGTCCGCCGTTGGCCGCGG
CTACACCGTGCGGTTCTCCGCGTCCAGCACTTCGGTGCGGGTGACGGCGG
GCGACTCGCGCGGCGCAGCTGGGGACACGCTGGCGCTCTCCGCCTCCTCC
AACCCGTTCTTCGCCACGCTCTCCGGCACCACCTCCTCCACCTTGCGCGG
CGGTAGCGCGCTGTTCGAGGGCACGACGCTGTCGCGCTCCGGCGCGGGCG
TCGTGATGACAGCGGCCGGCACCGTGAACGGCACCGCCATGACAACGGCG
TCGCAACCGTTCGCGATCGTGCCGCAGGTGCTGGCGCGCATGCGCGTCGT
GTCCCGCCCGCTCAACGTGCTGGCGGCGGGCGAGAGCTTCTCCGTCGGCC
TGCTCATGCGCACGCGGGAGGGCGTCACCAACGCGAGCGACTCGGACACT
ATCGTCACGGCCGCGCTACTGCCCGACGGTCACTCCGGCGGCTCCGGCGC
CTCGCTGCATGGCGAGGTGTCCGTGCGCGCGGTGCAGGGCGTGGTGACGT
TCAGCAACCTGTCGCTGTCCGCCGTTGGCCGCGGCTACACCGTGCGGTTC
TCCGCGTCCAGCACTTCG
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